The 2023 MDPI Annual Report has
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17 pages, 6352 KiB  
Article
Screening and Characterization of Antioxidant Film Applicable to Walnut Kernels from Juglans sigillata
by Ping Li, Yujia Zhang, Changwei Cao, Yaxi Luo, Huan Kan and Yun Liu
Foods 2024, 13(9), 1313; https://doi.org/10.3390/foods13091313 (registering DOI) - 25 Apr 2024
Abstract
Walnuts play a positive role in human health due to their large amounts of unsaturated fatty acids, whereas lipid oxidation can easily occur during storage. Herein, three natural antioxidants (epicatechin, sesamol, and myricetin) were added to the composite film cross-linked with chitosan and [...] Read more.
Walnuts play a positive role in human health due to their large amounts of unsaturated fatty acids, whereas lipid oxidation can easily occur during storage. Herein, three natural antioxidants (epicatechin, sesamol, and myricetin) were added to the composite film cross-linked with chitosan and soy protein peptide, and the antioxidant film appropriate for the preservation of walnut kernels from Juglans sigillata was screened to improve the storage quality of walnuts. The results showed that three antioxidant films could all enhance the storage performance of walnut kernels, with sesamol being the best. The characterization of antioxidant film cross-linked with chitosan and soy protein peptide containing sesamol (C/S-ses film) revealed that the composite film improved the slow release and stability of sesamol; in addition, the presence of sesamol could effectively reduce the light transmittance and water vapor permeability of the composite film, together with significantly enhancing the antioxidant and antimicrobial activities, resulting in an effective prolongation of the storage period of walnut kernels. These findings indicated that C/S-ses possess excellent potential for retarding the oxidative rancidity of unsaturated fatty acids and will provide an effective strategy for the preservation of walnut kernels. Full article
(This article belongs to the Section Food Packaging and Preservation)
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21 pages, 3741 KiB  
Review
Methanotrophy: A Biological Method to Mitigate Global Methane Emission
by Anju Rani, Aarushi Pundir, Medhashree Verma, Samiksha Joshi, Geeta Verma, Snežana Andjelković, Snežana Babić, Jasmina Milenković and Debasis Mitra
Microbiol. Res. 2024, 15(2), 634-654; https://doi.org/10.3390/microbiolres15020042 (registering DOI) - 25 Apr 2024
Abstract
Methanotrophy is a biological process that effectively reduces global methane emissions by utilizing microorganisms that can utilize methane as a source of energy under both oxic and anoxic conditions, using a variety of different electron acceptors. Methanotrophic microbes, which utilize methane as their [...] Read more.
Methanotrophy is a biological process that effectively reduces global methane emissions by utilizing microorganisms that can utilize methane as a source of energy under both oxic and anoxic conditions, using a variety of different electron acceptors. Methanotrophic microbes, which utilize methane as their primary source of carbon and energy, are microorganisms found in various environments, such as soil, sediments, freshwater, and marine ecosystems. These microbes play a significant role in the global carbon cycle by consuming methane, a potent greenhouse gas, and converting it into carbon dioxide, which is less harmful. However, methane is known to be the primary contributor to ozone formation and is considered a major greenhouse gas. Methane alone contributes to 30% of global warming; its emissions increased by over 32% over the last three decades and thus affect humans, animals, and vegetation adversely. There are different sources of methane emissions, like agricultural activities, wastewater management, landfills, coal mining, wetlands, and certain industrial processes. In view of the adverse effects of methane, urgent measures are required to reduce emissions. Methanotrophs have attracted attention as multifunctional bacteria with potential applications in biological methane mitigation and environmental bioremediation. Methanotrophs utilize methane as a carbon and energy source and play significant roles in biogeochemical cycles by oxidizing methane, which is coupled to the reduction of various electron acceptors. Methanotrophy, a natural process that converts methane into carbon dioxide, presents a promising solution to mitigate global methane emissions and reduce their impact on climate change. Nonetheless, additional research is necessary to enhance and expand these approaches for extensive use. In this review, we summarize the key sources of methane, mitigation strategies, microbial aspects, and the application of methanotrophs in global methane sinks with increasing anthropogenic methane emissions. Full article
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20 pages, 5837 KiB  
Article
A Weighted Feature Fusion Model for Unsteady Aerodynamic Modeling at High Angles of Attack
by Wenzhao Dong, Xiaoguang Wang, Qi Lin, Chuan Cheng and Liangcong Zhu
Aerospace 2024, 11(5), 339; https://doi.org/10.3390/aerospace11050339 (registering DOI) - 25 Apr 2024
Abstract
Unsteady aerodynamic prediction at high angles of attack is of great importance to the design and development of advanced fighters. In this paper, a weighted feature fusion model (WFFM) that combines the state-space model and neural networks is proposed to build an unsteady [...] Read more.
Unsteady aerodynamic prediction at high angles of attack is of great importance to the design and development of advanced fighters. In this paper, a weighted feature fusion model (WFFM) that combines the state-space model and neural networks is proposed to build an unsteady aerodynamic model for the precise simulation and control of post-stall maneuvers. In the proposed model, the influences of the physical model on neural networks are considered and adjusted by introducing a standardization layer and a new weighting method. A long short-term memory (LSTM) network is used to fuse two mappings: one from flight states to aerodynamic loads, and the other from low-fidelity data to high-fidelity data. Data from wind tunnel oscillation experiments at high angles of attack using a new kind of wire-driven parallel robot and the traditional tail support are used for verifying the proposed aerodynamic model. The output of the WFFM is also compared with predictions from other models, such as the state-space model, single LSTM model, and feature fusion model not including a feature weighting layer. Results demonstrate improved accuracy of the proposed model in the interpolation and extrapolation tests. Furthermore, the WFFM is applied to the flight simulation of F-16 with different control inputs. Compared with conventional models, the WFFM shows improved accuracy and better generalization capability. Full article
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18 pages, 5000 KiB  
Article
A New Data Processing Approach for the SHPB Test Based on PSO-TWER
by Xuesong Wang, Zhenyang Xu and Lianjun Guo
Appl. Sci. 2024, 14(9), 3624; https://doi.org/10.3390/app14093624 (registering DOI) - 25 Apr 2024
Abstract
This study addresses the challenge of accurately determining the arrival time of stress wave signals in SHPB test data processing. To eliminate human error, we introduce the time-window energy ratio method and evaluate six filters for noise reduction using box fractal dimensions. A [...] Read more.
This study addresses the challenge of accurately determining the arrival time of stress wave signals in SHPB test data processing. To eliminate human error, we introduce the time-window energy ratio method and evaluate six filters for noise reduction using box fractal dimensions. A mathematical model is established to optimize the stress equilibrium and impact process, which is solved using particle swarm optimization, resulting in the PSO-TWER method. We explore the impact of inertia weight and calculation methods on optimization outcomes, defining a stress equilibrium evaluation index. The results indicate that time-window length significantly affects arrival-time outputs, and the dynamic inertia weight factor enhances optimization convergence. The method accurately determines arrival times and effectively screens test data, providing a robust approach for SHPB test data processing. Full article
(This article belongs to the Section Materials Science and Engineering)
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27 pages, 10477 KiB  
Article
Prognostic Value of Histone Acetyl Transferase 1 (HAT-1) and Inflammatory Signatures in Pancreatic Cancer
by Miguel A. Ortega, Laura Jiménez-Álvarez, Oscar Fraile-Martinez, Cielo Garcia-Montero, Luis G. Guijarro, Leonel Pekarek, Silvestra Barrena-Blázquez, Ángel Asúnsolo, Laura López-González, María Del Val Toledo-Lobo, Melchor Álvarez-Mon, Miguel A. Saez, Alberto Gutiérrez-Calvo and Raúl Díaz-Pedrero
Curr. Issues Mol. Biol. 2024, 46(5), 3839-3865; https://doi.org/10.3390/cimb46050239 (registering DOI) - 25 Apr 2024
Abstract
Pancreatic cancer is a type of gastrointestinal tumor with a growing incidence and mortality worldwide. Pancreatic ductal adenocarcinoma (PDAC) constitutes 90% of cases, and late-stage diagnosis is common, leading to a 5-year survival rate of less than 10% in high-income countries. The use [...] Read more.
Pancreatic cancer is a type of gastrointestinal tumor with a growing incidence and mortality worldwide. Pancreatic ductal adenocarcinoma (PDAC) constitutes 90% of cases, and late-stage diagnosis is common, leading to a 5-year survival rate of less than 10% in high-income countries. The use of biomarkers has different proven translational applications, facilitating early diagnosis, accurate prognosis and identification of potential therapeutic targets. Several studies have shown a correlation between the tissue expression levels of various molecules, measured through immunohistochemistry (IHC), and survival rates in PDAC. Following the hallmarks of cancer, epigenetic and metabolic reprogramming, together with immune evasion and tumor-promoted inflammation, plays a critical role in cancer initiation and development. In this study, we aim to explore via IHC and Kaplan–Meier analyses the prognostic value of various epigenetic-related markers (histones 3 and 4 (H3/H4), histone acetyl transferase 1 (HAT-1), Anti-Silencing Function 1 protein (ASF1), Nuclear Autoantigenic Sperm Protein (NASP), Retinol Binding Protein 7 (RBBP7), importin 4 (IPO4) and IPO5), metabolic regulators (Phosphoglycerate mutase (PGAM)) and inflammatory mediators (allograft inflammatory factor 1 (AIF-1), interleukin 10 (IL-10), IL-12A and IL-18) in patients with PDAC. Also, through a correlation analysis, we have explored the possible interconnections in the expression levels of these molecules. Our results show that higher expression levels of these molecules are directly associated with poorer survival rates in PDAC patients, except in the case of IL-10, which shows an inverse association with mortality. HAT1 was the molecule more clearly associated with mortality, with a hazard risk of 21.74. The correlogram demonstrates an important correlation between almost all molecules studied (except in the case of IL-18), highlighting potential interactions between these molecules. Overall, our study demonstrates the relevance of including different markers from IHC techniques in order to identify unexplored molecules to develop more accurate prognosis methods and possible targeted therapies. Additionally, our correlation analysis reveals potential interactions among these markers, offering insights into PDAC’s pathogenesis and paving the way for targeted therapies tailored to individual patient profiles. Future studies should be conducted to confirm the prognostic value of these components in PDAC in a broader sample size, as well as to evaluate the possible biological networks connecting them. Full article
(This article belongs to the Special Issue Molecular Advances in Cancer and the Tumor Microenvironment)
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15 pages, 14837 KiB  
Article
Button-Type Beam Position Monitor Development for Fourth-Generation Synchrotron Light Sources: Numerical Modeling and Test Bench Measurements
by Stefano Cleva, Silvano Bassanese, Massimiliano Comisso, Moussa El Ajjouri, Rudi Sergo, Christian Morello and Andrea Passarelli
Sensors 2024, 24(9), 2726; https://doi.org/10.3390/s24092726 (registering DOI) - 25 Apr 2024
Abstract
This paper addresses the design of beam position monitor (BPM) devices suitable for fourth-generation diffraction-limited X-ray storage rings. Detailed investigations of the electromagnetic (EM) phenomena occurring inside the component under various working conditions are carried out by considering different BPM EM models defined [...] Read more.
This paper addresses the design of beam position monitor (BPM) devices suitable for fourth-generation diffraction-limited X-ray storage rings. Detailed investigations of the electromagnetic (EM) phenomena occurring inside the component under various working conditions are carried out by considering different BPM EM models defined by their geometry and materials. Moving from a theoretical characterization of the common round geometry, rhomboidal structures are studied through a careful numerical analysis relying on advanced computer-aided tools. Several critical elements, such as wakefields, pick-up signal extraction, and trapped and propagating modes, are explored from the simulation point of view and from the experimental one, by deploying a manufactured microwave test bench, which is employed to measure the radio frequency behavior of a BPM prototype built at Elettra Sincrotrone Trieste. The aim of the proposed study is to identify a satisfactory tradeoff between achievable performance and practical realizability for BPM devices operating in last-generation light sources. Full article
(This article belongs to the Section Sensors Development)
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16 pages, 3025 KiB  
Article
Comparative Investigation of pH–Dependent Availability of Pancreatic Enzyme Preparations In Vitro
by Amy Todd, Emma Bennett-Huntley, Jonas Rosendahl, Jürgen Schnekenburger and Waldemar Uhl
Pharmaceuticals 2024, 17(5), 552; https://doi.org/10.3390/ph17050552 (registering DOI) - 25 Apr 2024
Abstract
This study aimed to compare different pancreatic enzyme preparations (PEPs) available in Germany regarding particle geometry and size, and to evaluate enzyme activity under physiologically relevant conditions in vitro. Pancreatic endocrine insufficiency is characterized by deficiency of pancreatic enzymes resulting in maldigestion. It [...] Read more.
This study aimed to compare different pancreatic enzyme preparations (PEPs) available in Germany regarding particle geometry and size, and to evaluate enzyme activity under physiologically relevant conditions in vitro. Pancreatic endocrine insufficiency is characterized by deficiency of pancreatic enzymes resulting in maldigestion. It is orally treated by pancreatic enzyme replacement therapy. The formulations differ in their physical properties and enzyme release behavior, potentially resulting in inconsistent dosages and poor interchangeability of products. A total of 25 products were analyzed for particle size and number of particles per capsule. Enzyme activities of lipase, amylase, and protease were measured by digestion of olive oil emulsion, starch, and casein, respectively. To analyze enzyme release, gastric environments were simulated by incubating PEPs at pH 1, 4, or 5. Duodenal conditions were simulated by subsequent incubation at pH 6. Regarding physical properties and enzyme release kinetics, considerable differences between different PEPs were found. Furthermore, compared to the label claim, excess lipase activity was observed for most products, reaching up to 148%. These in vitro results suggest poor interchangeability of PEPs, potentially explained by physical and release characteristics. Physicians and patients should be aware of the potential gap between label claims and the real-life performance of different PEPs. Full article
(This article belongs to the Section Pharmaceutical Technology)
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20 pages, 707 KiB  
Article
Existence and Uniqueness Result for Fuzzy Fractional Order Goursat Partial Differential Equations
by Muhammad Sarwar, Noor Jamal, Kamaleldin Abodayeh, Chanon Promsakon and Thanin Sitthiwirattham
Fractal Fract. 2024, 8(5), 250; https://doi.org/10.3390/fractalfract8050250 (registering DOI) - 25 Apr 2024
Abstract
In this manuscript, we discuss fractional fuzzy Goursat problems with Caputo’s gH-differentiability. The second-order mixed derivative term in Goursat problems and two types of Caputo’s gH-differentiability pose challenges to dealing with Goursat problems. Therefore, in this study, we convert [...] Read more.
In this manuscript, we discuss fractional fuzzy Goursat problems with Caputo’s gH-differentiability. The second-order mixed derivative term in Goursat problems and two types of Caputo’s gH-differentiability pose challenges to dealing with Goursat problems. Therefore, in this study, we convert Goursat problems to equivalent systems fuzzy integral equations to deal properly with the mixed derivative term and two types of Caputo’s gH-differentiability. In this study, we utilize the concept of metric fixed point theory to discuss the existence of a unique solution of fractional fuzzy Goursat problems. For the useability of established theoretical work, we provide some numerical problems. We also discuss the solutions to numerical problems by conformable double Laplace transform. To show the validity of the solutions we provide 3D plots. We discuss, as an application, why fractional partial fuzzy differential equations are the generalization of usual partial fuzzy differential equations by providing a suitable reason. Moreover, we show the advantages of the proposed fractional transform over the usual Laplace transform. Full article
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12 pages, 3456 KiB  
Review
Diffuse Gliomas with FGFR3::TACC3 Fusion: Morphological and Molecular Features and Classification Challenges
by Elena Marastoni, Davide Mulone and Valeria Barresi
Cancers 2024, 16(9), 1644; https://doi.org/10.3390/cancers16091644 (registering DOI) - 25 Apr 2024
Abstract
FGFR3::TACC3 fusion is a driver, potentially targetable, genetic alteration identified in approximately 4% of high-grade diffuse gliomas and rare cases with low-grade histology. Herein, we review the genetic and epigenetic features of these tumors and highlight the challenges in their classification [...] Read more.
FGFR3::TACC3 fusion is a driver, potentially targetable, genetic alteration identified in approximately 4% of high-grade diffuse gliomas and rare cases with low-grade histology. Herein, we review the genetic and epigenetic features of these tumors and highlight the challenges in their classification and grading. Diffuse gliomas with FGFR3::TACC3 fusion display unique histopathological and molecular features, including an oligodendroglioma-like appearance, calcifications, and CD34 extravascular immunoreactivity. High-grade tumors exhibit molecular alterations and a DNA methylation profile typical of glioblastoma, suggesting that they may represent a subtype clinically characterized by a slightly better prognosis. Tumors with low-grade morphology are genetically and epigenetically heterogeneous. Some, exclusive to adults, have molecular alterations typical of glioblastoma, although most do not match any methylation classes, using version 12.5 of the Heidelberg classifier. Another group, which mostly affects children or adolescents, lacks the molecular features of glioblastoma and has a DNA methylation profile similar to that of low-grade glioneuronal tumors. In conclusion, diffuse gliomas with FGFR3::TACC3 fusion do not constitute a distinct nosological entity, owing to their genetic and epigenetic diversity. Further studies are warranted to clarify the biological aggressiveness of tumors with low-grade histology to refine the grading and determine the optimal treatment strategy. Full article
(This article belongs to the Special Issue Genomic, Epigenomic, and Transcriptomic Landscapes of Brain Cancers)
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18 pages, 719 KiB  
Review
Colorectal Cancer: Genetic Underpinning and Molecular Therapeutics for Precision Medicine
by Gideon T. Dosunmu and Ardaman Shergill
Genes 2024, 15(5), 538; https://doi.org/10.3390/genes15050538 (registering DOI) - 25 Apr 2024
Abstract
Colorectal cancer (CRC) accounts for about 10% of all cancer cases and 9% of cancer-related deaths globally. In the United States alone, CRC represents approximately 12.6% of all cancer cases, with a mortality rate of about 8%. CRC is now the first leading [...] Read more.
Colorectal cancer (CRC) accounts for about 10% of all cancer cases and 9% of cancer-related deaths globally. In the United States alone, CRC represents approximately 12.6% of all cancer cases, with a mortality rate of about 8%. CRC is now the first leading cause of cancer death in men younger than age 50 and second in women younger than age 50. This review delves into the genetic landscape of CRC, highlighting key mutations and their implications in disease progression and treatment. We provide an overview of the current and emerging therapeutic strategies tailored to individual genomic profiles. Full article
(This article belongs to the Section Human Genomics and Genetic Diseases)
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17 pages, 552 KiB  
Article
The Effect of a Subsequent Dose of Dexmedetomidine or Other Sedatives following an Initial Dose of Dexmedetomidine on Sedation and Quality of Recovery in Cats: Part I
by Chrysoula Margeti, Georgios Kazakos, Vassilis Skampardonis, Apostolos D. Galatos, Theodora Zacharopoulou, Vassiliki Tsioli, Epameinondas Loukopoulos, Panagiota Tyrnenopoulou, Vasileios G. Papatsiros and Eugenia Flouraki
Vet. Sci. 2024, 11(5), 186; https://doi.org/10.3390/vetsci11050186 (registering DOI) - 25 Apr 2024
Abstract
Dexmedetomidine is an a2-agonist commonly used in veterinary practice. Occasionally, the administered dose of dexmedetomidine may result in insufficient sedation, and an additional dose or drug may be required. The sedative effects of seven different drugs administered at subsequent time points [...] Read more.
Dexmedetomidine is an a2-agonist commonly used in veterinary practice. Occasionally, the administered dose of dexmedetomidine may result in insufficient sedation, and an additional dose or drug may be required. The sedative effects of seven different drugs administered at subsequent time points after an initial, insufficient dose of dexmedetomidine were evaluated. Seven adult cats participated in this crossover, blind, randomised study. The groups consisted of two consecutive doses of dexmedetomidine (15 + 10 μg/kg) (DD) or a dose of dexmedetomidine (15 μg/kg) followed by either NS 0.9% (DC-control group), tramadol 2 mg/kg (DT), butorphanol 0.2 mg/kg (DBT), buprenorphine 20 μg/kg (DBP), ketamine 2 mg/kg (DK), or midazolam 0.1 mg/kg (DM). Sedation was evaluated using the Grint sedation scale. In all groups, atipamezole was administered at the end of the evaluation, and recovery was assessed using the Lozano and Sams recovery scales. The DC and DM groups exhibited minimal sedative effects. The maximum sedative effect was observed in the DD and DK groups, while sedation in the DD and DK groups was significantly higher compared to the DC group. Recovery in all groups was uneventful, except in the DM group, where it was prolonged and difficult, although no statistically significant difference was detected. Therefore, insufficient sedation with dexmedetomidine can be enhanced by a subsequent dose of dexmedetomidine, ketamine, or butorphanol, whereas the addition of midazolam reduces sedation and prolongs recovery. Full article
(This article belongs to the Special Issue Minimizing Anesthetic Risks in Dogs and Cats)
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11 pages, 1871 KiB  
Article
Engineering Improvement of the Core Layers of Charge Trapping Flash Memory Based on Doped HfO2 and Segmented Fabrication
by Kexiang Wang, Jie Lu, Zeyang Xiang, Zixuan Wang, Huilin Jin, Ranping Li and Ran Jiang
Electronics 2024, 13(9), 1642; https://doi.org/10.3390/electronics13091642 (registering DOI) - 25 Apr 2024
Abstract
An engineering approach was applied to modify the core layers of charge-trapping flash (CTF) memory—the blocking layer, charge-trapping layer, and tunneling layer. The doping of Ti in the charge-trapping layer and the use of Si-doped HfO2 for the tunneling layer could optimize [...] Read more.
An engineering approach was applied to modify the core layers of charge-trapping flash (CTF) memory—the blocking layer, charge-trapping layer, and tunneling layer. The doping of Ti in the charge-trapping layer and the use of Si-doped HfO2 for the tunneling layer could optimize charge capture and leakage control. This design enhances programming and erasing speeds and increases overall device stability by creating more corner fields and using the Coulomb blockade effect. Experimental results demonstrate a larger memory window and better charge retention for the new device at the same charge-trapping layer thickness. These findings signify the advancement of the new CTF memory in balancing fast programming and long-term charge retention. The long-standing contradiction between charge capturing and retention could be partially resolved by using this engineering method. Full article
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12 pages, 240 KiB  
Article
A Study of Blood Pressure and Physical Fitness in People with Intellectual Disabilities in South Korea
by Bogja Jeoung
Healthcare 2024, 12(9), 887; https://doi.org/10.3390/healthcare12090887 (registering DOI) - 25 Apr 2024
Abstract
Individuals with intellectual disabilities have a shorter lifespan and significantly higher prevalence of conditions such as hypertension and cardiovascular diseases than healthy individuals. Thus, assessing the elements that contribute to their physical fitness is crucial. This cross-sectional study examined the relationship between the [...] Read more.
Individuals with intellectual disabilities have a shorter lifespan and significantly higher prevalence of conditions such as hypertension and cardiovascular diseases than healthy individuals. Thus, assessing the elements that contribute to their physical fitness is crucial. This cross-sectional study examined the relationship between the blood pressure and physical fitness of people with intellectual disabilities in South Korea, considering differences across sexes, age groups, physical attributes, and disability levels. It used data from 8502 individuals with intellectual disabilities aged 20–59 years who participated in a survey of a National Fitness Standard Center (NFSC) between 2018 and 2021. A series of t-tests, one-way analysis of variance, logistic regression, and the four-quartile method were used for data analyses. The results showed differences in physical fitness levels between men and women considering all aspects except for BMI (Body Mass Index), with men showing higher blood pressure levels. Lower grip strength, lower PEI (physical efficiency index) scores, and higher BMI were associated with increased blood pressure. Additionally, individuals with higher levels of disability tended to have lower levels of physical fitness, while higher physical fitness levels were associated with lower blood pressure. Therefore, low fitness levels and hypertension risk may be important health indicators for people with intellectual disabilities. Full article
(This article belongs to the Special Issue Physical Activity in Vulnerable Groups)
12 pages, 3093 KiB  
Article
A Mass Spectrometry Strategy for Protein Quantification Based on the Differential Alkylation of Cysteines Using Iodoacetamide and Acrylamide
by Dávid Virág, Gitta Schlosser, Adina Borbély, Gabriella Gellén, Dávid Papp, Zoltán Kaleta, Borbála Dalmadi-Kiss, István Antal and Krisztina Ludányi
Int. J. Mol. Sci. 2024, 25(9), 4656; https://doi.org/10.3390/ijms25094656 (registering DOI) - 25 Apr 2024
Abstract
Mass spectrometry has become the most prominent yet evolving technology in quantitative proteomics. Today, a number of label-free and label-based approaches are available for the relative and absolute quantification of proteins and peptides. However, the label-based methods rely solely on the employment of [...] Read more.
Mass spectrometry has become the most prominent yet evolving technology in quantitative proteomics. Today, a number of label-free and label-based approaches are available for the relative and absolute quantification of proteins and peptides. However, the label-based methods rely solely on the employment of stable isotopes, which are expensive and often limited in availability. Here we propose a label-based quantification strategy, where the mass difference is identified by the differential alkylation of cysteines using iodoacetamide and acrylamide. The alkylation reactions were performed under identical experimental conditions; therefore, the method can be easily integrated into standard proteomic workflows. Using high-resolution mass spectrometry, the feasibility of this approach was assessed with a set of tryptic peptides of human serum albumin. Several critical questions, such as the efficiency of labeling and the effect of the differential alkylation on the peptide retention and fragmentation, were addressed. The concentration of the quality control samples calculated against the calibration curves were within the ±20% acceptance range. It was also demonstrated that heavy labeled peptides exhibit a similar extraction recovery and matrix effect to light ones. Consequently, the approach presented here may be a viable and cost-effective alternative of stable isotope labeling strategies for the quantification of cysteine-containing proteins. Full article
(This article belongs to the Special Issue High Resolution Mass Spectrometry in Molecular Sciences: 2nd Edition)
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16 pages, 5327 KiB  
Article
Insights into Early Phases of Phycocyanin Crystal Formation via SONICC Spectroscopy
by Eugenia Pechkova, Paola Ghisellini, Stefano Fiordoro, Cristina Rando and Roberto Eggenhöffner
Crystals 2024, 14(5), 395; https://doi.org/10.3390/cryst14050395 (registering DOI) - 25 Apr 2024
Abstract
This research delves into the early nucleation stages of phycocyanin, a protein pivotal for its fluorescent properties and crystalline stability and holding considerable potential for biotechnological applications. The paper contrasts traditional crystallization methods with the innovative Langmuir–Blodgett nanotemplate approach, aiming to enhance molecular [...] Read more.
This research delves into the early nucleation stages of phycocyanin, a protein pivotal for its fluorescent properties and crystalline stability and holding considerable potential for biotechnological applications. The paper contrasts traditional crystallization methods with the innovative Langmuir–Blodgett nanotemplate approach, aiming to enhance molecular assembly and nucleation processes. The study employs Langmuir–Blodgett nanotemplates alongside second-order nonlinear imaging of chiral crystal (SONICC) spectroscopy. This combination is designed to orderly organize phycocyanin molecules and provide a sensitive visualization of early-stage crystal formation, capturing the intricate dynamics of protein crystallization. The experiments were conducted under controlled conditions, where surface pressure was maintained at 26 mN/m and barrier speed at 70 cm/min to optimize the monolayer formation at the air–water interface. The Langmuir–Blodgett method, compared to traditional vapor diffusion techniques, shows improvements in the uniformity and efficiency of nucleation. The sensitivity of SONICC spectroscopy significantly enhances the visualization of the nucleation process, revealing a more structured and uniform crystalline assembly in the early stages of formation. This method demonstrates a substantial improvement in nucleation dynamics, leading to a more orderly growth process and potentially larger, well-ordered crystals. Integrating Langmuir–Blodgett nanotemplates with SONICC spectroscopy offers a significant step in understanding protein crystallization processes with insights into the nucleation and growth of protein crystals and broad implications for refining crystallography methodologies of protein-based biomaterials, contributing to the advancement of structural biology and materials science. Full article
(This article belongs to the Section Biomolecular Crystals)
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13 pages, 2421 KiB  
Article
Age, Growth, and Otolith Morphometrics of Trachinus draco (L., 1758) and Trachinus radiatus (Cuvier, 1829) in the Eastern Mediterranean
by Vasiliki Nikiforidou, Chryssi Mytilineou, Athanasios Alexandropoulos and Aikaterini Anastasopoulou
Fishes 2024, 9(5), 152; https://doi.org/10.3390/fishes9050152 (registering DOI) - 25 Apr 2024
Abstract
Trachinus draco and Trachinus radiatus are two bycatch species of low commercial value and no sufficient knowledge on their biological features. In the present study, the weight–length relationship, age, growth, and ten otolith morphometric variables of these species were investigated in the southwestern [...] Read more.
Trachinus draco and Trachinus radiatus are two bycatch species of low commercial value and no sufficient knowledge on their biological features. In the present study, the weight–length relationship, age, growth, and ten otolith morphometric variables of these species were investigated in the southwestern Aegean Sea for the first time. Positive allometric and isometric growth in the weight were defined in T. draco and T. radiatus. The weight–length relationship was described by the parameters α = 0.002415 and b = 3.35745 in T. draco and α = 0.007582 and b = 3.09452 in T. radiatus. The von Bertalanffy growth function parameters were L = 44.51 cm, k = 0.15 year−1, and t0 = −1.31 years for T. draco and L = 58.47 cm, k = 0.16 year−1, and t0 = −0.78 years for T. radiatus. Ten otolith variables (radius, length, width, area, perimeter, roundness, circularity, form factor, rectangularity, and ellipticity) showed a significant relationship with size for both species, except the ellipticity in T. radiatus. The mean values of all the otolith variables were higher in T. radiatus than in T. draco. The otolith of T. radiatus was found to become more rectangular with size as compared to the otolith of T. radiatus. The results of this work can support further research on the behavioral and ecological features of the two species. Full article
(This article belongs to the Section Biology and Ecology)
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17 pages, 2737 KiB  
Article
Peptides Targeting the IF1–ATP Synthase Complex Modulate the Permeability Transition Pore in Cancer HeLa Cells
by Martina Grandi, Simone Fabbian, Giancarlo Solaini, Alessandra Baracca, Massimo Bellanda and Valentina Giorgio
Int. J. Mol. Sci. 2024, 25(9), 4655; https://doi.org/10.3390/ijms25094655 (registering DOI) - 25 Apr 2024
Abstract
The mitochondrial protein IF1 is upregulated in many tumors and acts as a pro-oncogenic protein through its interaction with the ATP synthase and the inhibition of apoptosis. We have recently characterized the molecular nature of the IF1–Oligomycin Sensitivity Conferring Protein (OSCP) subunit interaction; [...] Read more.
The mitochondrial protein IF1 is upregulated in many tumors and acts as a pro-oncogenic protein through its interaction with the ATP synthase and the inhibition of apoptosis. We have recently characterized the molecular nature of the IF1–Oligomycin Sensitivity Conferring Protein (OSCP) subunit interaction; however, it remains to be determined whether this interaction could be targeted for novel anti-cancer therapeutic intervention. We generated mitochondria-targeting peptides to displace IF1 from the OSCP interaction. The use of one selective peptide led to displacement of the inhibitor IF1 from ATP synthase, as shown by immunoprecipitation. NMR spectroscopy analysis, aimed at clarifying whether these peptides were able to directly bind to the OSCP protein, identified a second peptide which showed affinity for the N-terminal region of this subunit overlapping the IF1 binding region. In situ treatment with the membrane-permeable derivatives of these peptides in HeLa cells, that are silenced for the IF1 inhibitor protein, showed significant inhibition in mitochondrial permeability transition and no effects on mitochondrial respiration. These peptides mimic the effects of the IF1 inhibitor protein in cancer HeLa cells and confirm that the IF1–OSCP interaction inhibits apoptosis. A third peptide was identified which counteracts the anti-apoptotic role of IF1, showing that OSCP is a promising target for anti-cancer therapies. Full article
(This article belongs to the Section Molecular Oncology)
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15 pages, 7139 KiB  
Article
Two Fluorescent Probes for Recognition of Acetylcholinesterase: Design, Synthesis, and Comparative Evaluation
by Xia Lin, Qingyuan Yi, Binyang Qing, Weisen Lan, Fangcheng Jiang, Zefeng Lai, Jijun Huang, Qing Liu, Jimin Jiang, Mian Wang, Lianjia Zou, Xinbi Huang and Jianyi Wang
Molecules 2024, 29(9), 1961; https://doi.org/10.3390/molecules29091961 (registering DOI) - 25 Apr 2024
Abstract
In this study, two “on–off” probes (BF2-cur-Ben and BF2-cur-But) recognizing acetylcholinesterase (AChE) were designed and synthesized. The obtained probes can achieve recognition of AChE with good selectivity and pH-independence with a linear range of 0.5~7 U/mL and 0.5~25 U/mL [...] Read more.
In this study, two “on–off” probes (BF2-cur-Ben and BF2-cur-But) recognizing acetylcholinesterase (AChE) were designed and synthesized. The obtained probes can achieve recognition of AChE with good selectivity and pH-independence with a linear range of 0.5~7 U/mL and 0.5~25 U/mL respectively. BF2-cur-Ben has a lower limit of detection (LOD) (0.031 U/mL), higher enzyme affinity (Km = 16 ± 1.6 μM), and higher inhibitor sensitivity. A responsive mechanism of the probes for AChE was proposed based on HPLC and mass spectra (MS) experiments, as well as calculations. In molecular simulation, BF2-cur-Ben forms more hydrogen bonds (seven, while BF2-cur-But has only four) and thus has a more stable enzyme affinity, which is mirrored by the results of the comparison of Km values. These two probes could enable recognition of intracellular AChE and probe BF2-cur-Ben has superior cell membrane penetration due to its higher log p value. These probes can monitor the overexpression of AChE during apoptosis of lung cancer cells. The ability of BF2-cur-Ben to monitor AChE in vivo was confirmed by a zebrafish experiment. Full article
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16 pages, 2909 KiB  
Article
Numerical Investigations on the Effects of Dome Cooling Air Flow on Combustion Characteristics and Emission Behavior in a Can-Type Gas Turbine Combustor
by Chenzhen Ji, Wentao Shi, Enlei Ke, Jiaying Cheng, Tong Zhu, Chao Zong and Xinyan Li
Aerospace 2024, 11(5), 338; https://doi.org/10.3390/aerospace11050338 (registering DOI) - 25 Apr 2024
Abstract
To meet the requirements of achieving higher efficiency and lower NOx pollution, the flame temperature in gas turbine combustors increases continually; thus, the effusion-cooling technology has been used to ensure the combustor liner remains within the allowed temperature, by which the combustion characteristics [...] Read more.
To meet the requirements of achieving higher efficiency and lower NOx pollution, the flame temperature in gas turbine combustors increases continually; thus, the effusion-cooling technology has been used to ensure the combustor liner remains within the allowed temperature, by which the combustion characteristics and emission behavior are possibly influenced. In order to investigate the effects of dome cooling air flow on combustion characteristics and NOx emissions, three-dimensional combustion simulations for a swirl-stabilized can-type gas turbine combustor are carried out in this work by using the computational fluid dynamics (CFD) method. Through adjusting the ratio of the dome cooling air flow and the dilution cooling air flow, the characteristics of flow field, temperature distribution and NOx emissions under each work condition are analyzed. At different ratios of the dome-cooling air flow to the total air flow, the flow velocity field in the region near the center of the combustion chamber is not changed much, while the velocity field near the chamber wall shows a more significant difference. The temperature in the outer recirculation zone within the combustion chamber is effectively reduced as the dome cooling air flow increases. By analyzing the distribution characteristics of the concentration of OH*, it is demonstrated that the dome cooling air flow does not have a direct effect on the reaction of combustion. It is also found that as the ratio of the dome cooling air flow to the total air flow increases from 0 to 0.15, the value of the NOx emissions drops from 28.4 to 26.3 ppmv, about a 7.4% decrease. The distribution of the NOx generation rate in the combustion chamber does not vary significantly with the increasing dome cooling air flow. Furthermore, by calculating the residence time in different stages, when the the ratio of the dome cooling air flow to the total air flow varies from 0 to 0.15, the residence time in the pilot stage decreases obviously, from 42 ms to 18 ms. This means that reduction in residence time is the main factor in the decrease of NOx emissions when the dome cooling air flow increases. Full article
(This article belongs to the Special Issue Progress in Turbomachinery Technology for Propulsion)
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22 pages, 4371 KiB  
Review
A Comprehensive Review of the Rheological Properties of Powders in Pharmaceuticals
by Jack Brubaker and Sara Moghtadernejad
Powders 2024, 3(2), 233-254; https://doi.org/10.3390/powders3020015 (registering DOI) - 25 Apr 2024
Abstract
The perpetual significance of the pharmaceutical industry in society necessitates ongoing research efforts to enhance the efficacy of its manufacturing processes. Given that drug product manufacturing typically involves powder processing, a thorough understanding of powder characterization is needed for optimal process performance. Powder [...] Read more.
The perpetual significance of the pharmaceutical industry in society necessitates ongoing research efforts to enhance the efficacy of its manufacturing processes. Given that drug product manufacturing typically involves powder processing, a thorough understanding of powder characterization is needed for optimal process performance. Powder rheology is commonly examined in pharmaceutical manufacturing to elucidate the relationship between powder properties and the performance of pharmaceutical processes. This paper provides a brief discussion of recent literature regarding the various powder properties and characterization techniques encompassed in powder rheology. The powder properties are categorized into particle size, particle morphology, friability, electrostatics, permeability, wettability, cohesion, bulk density, and agglomeration sections. A distinct focus is placed on the segment about powder wettability. This review informs readers about the fundamental properties of powders known to influence pharmaceutical processes. It discusses the interrelationships among these properties, powder characterization techniques, and ideal states of powder properties that lead to optimal process performance. Full article
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24 pages, 1310 KiB  
Article
Lessons from Master Hongyi’s Experiences with Impermanence for Death Education
by Fazhao Shi (Hsu-Feng Lee)
Religions 2024, 15(5), 528; https://doi.org/10.3390/rel15050528 (registering DOI) - 25 Apr 2024
Abstract
This paper explores the life and teachings of the renowned Chinese Buddhist monk Master Hongyi (1880–1942), focusing on his transformative encounters with impermanence and their relevance for contemporary death education. Drawing upon historical records, personal writings, and the accounts of his contemporaries, this [...] Read more.
This paper explores the life and teachings of the renowned Chinese Buddhist monk Master Hongyi (1880–1942), focusing on his transformative encounters with impermanence and their relevance for contemporary death education. Drawing upon historical records, personal writings, and the accounts of his contemporaries, this study traces Master Hongyi’s profound spiritual journey from intense grief and existential crisis to enlightened equanimity in the face of mortality. It examines how his skillful application of Buddhist practices enabled him to find meaning, purpose, and liberation amidst the challenges of aging, illness, and dying. Through an in-depth analysis of Master Hongyi’s wisdom and lived experience, this paper proposes the “Hongyi Model”, an innovative paradigm for integrating the spiritual, psychological, and artistic dimensions of his approach into modern death education. The findings underscore the transformative potential of Buddhist teachings for fostering a more authentic, meaningful, and spiritually grounded engagement with mortality, offering valuable insights for educators, counselors, and healthcare professionals working in end-of-life care. Full article
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16 pages, 1891 KiB  
Article
Production, Characterization Purification, and Antitumor Activity of L-Asparaginase from Aspergillus niger
by Suzane Meriely da Silva Duarte, Allysson Kayron de Carvalho Silva, Katia Regina Assunção Borges, Carolina Borges Cordeiro, Fernanda Jeniffer Lindoso Lima, Marcos Antônio Custódio Neto da Silva, Marcelo de Souza Andrade and Maria do Desterro Soares Brandão Nascimento
Fermentation 2024, 10(5), 226; https://doi.org/10.3390/fermentation10050226 (registering DOI) - 25 Apr 2024
Abstract
Cervical cancer is caused by a persistent and high-grade infection. It is caused by the Human Papillomavirus (HPV), which, when entering cervical cells, alters their physiology and generates serious lesions. HPV 18 is among those most involved in carcinogenesis in this region, but [...] Read more.
Cervical cancer is caused by a persistent and high-grade infection. It is caused by the Human Papillomavirus (HPV), which, when entering cervical cells, alters their physiology and generates serious lesions. HPV 18 is among those most involved in carcinogenesis in this region, but there are still no drug treatments that cause cure or total remission of lesions caused by HPV. It is known that L-asparaginase is an amidohydrolase, which plays a significant role in the pharmaceutical industry, particularly in the treatment of specific cancers. Due to its antitumor properties, some studies have demonstrated its cytotoxic effect against cervical cancer cells. However, the commercial version of this enzyme has side effects, such as hypersensitivity, allergic reactions, and silent inactivation due to the formation of antibodies. To mitigate these adverse effects, several alternatives have been explored, including the use of L-asparaginase from other microbiological sources, which is the case with the use of the fungus Aspergillus niger, a high producer of L-asparaginase. The study investigated the influence of the type of fermentation, precipitant, purification, characterization, and in vitro cytotoxicity of L-asparaginase. The results revealed that semisolid fermentation produced higher enzymatic activity and protein concentration of A. niger. The characterized enzyme showed excellent stability at pH 9.0, temperature of 50 °C, resistance to surfactants and metallic ions, and an increase in enzymatic activity with the organic solvent ethanol. Furthermore, it exhibited low cytotoxicity in GM and RAW cells and significant cytotoxicity in HeLa cells. These findings indicate that L-asparaginase derived from A. niger may be a promising alternative for pharmaceutical production. Its attributes, including stability, activity, and low toxicity in healthy cells, suggest that this modified enzyme could overcome challenges associated with antitumor therapy. Full article
(This article belongs to the Section Microbial Metabolism, Physiology & Genetics)
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14 pages, 5235 KiB  
Article
A Highly Resolved Speleothem δ13C Record from Central China and Its Manifestation on Multiple Time Scales during the Last Glacial
by Qingmin Chen, Xing Cheng, Li Deng, Kaikai He, Wenshuo Zhang, Gang Xue, Zeke Zhang, Le Ma, Gaohong Wang, Hai Cheng and R. Lawrence Edwards
Minerals 2024, 14(5), 450; https://doi.org/10.3390/min14050450 (registering DOI) - 25 Apr 2024
Abstract
Speleothem δ13C in monsoonal China differs from speleothem δ18O, which is widely used as a climatic proxy for several complex control reasons. Nevertheless, δ13C records have the potential to reveal the implications of hydroclimatic changes. This study [...] Read more.
Speleothem δ13C in monsoonal China differs from speleothem δ18O, which is widely used as a climatic proxy for several complex control reasons. Nevertheless, δ13C records have the potential to reveal the implications of hydroclimatic changes. This study reports a speleothem δ13C record from Didonghe (DDH) Cave in central China spanning 34 to 13 kyr BP. After we investigated the factors that influence speleothem δ13C, we found that the δ13C record showed that DDH Cave can prompt directional shifts via local hydroclimatic changes, such as in vegetation types, biomass, and rock–water interaction processes, suggesting that δ13C is mainly controlled by the local hydroclimate. Ensemble empirical mode decomposition (EEMD) results revealed a coupling relationship between δ18O and δ13C on multiple timescales, which suggested that changes in precipitation caused by large-scale monsoonal circulation are controlled by regional hydrological conditions to a great extent. However, the hydrological conditions of the cave were relatively mild and humid during the last glacial maximum (LGM), which revealed the impact of evaporation on changes in the region’s hydrological conditions. We also found that the δ18O and δ13C profiles decoupled when δ13C changed with a shift in the location of the westerly during HS1. The δ13C record correlates well with other paleoclimate records, suggesting that regional hydrological conditions are also modulated by the Earth’s internal and external driving factors. Full article
(This article belongs to the Special Issue Stalagmite Geochemistry and Its Paleoenvironmental Implication)
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