The 2023 MDPI Annual Report has
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21 pages, 5411 KiB  
Article
Influence of Cold Stress on Physiological and Phytochemical Characteristics and Secondary Metabolite Accumulation in Microclones of Juglans regia L.
by Nina V. Terletskaya, Elvira A. Shadenova, Yuliya A. Litvinenko, Kazhybek Ashimuly, Malika Erbay, Aigerim Mamirova, Irada Nazarova, Nataliya D. Meduntseva, Nataliya O. Kudrina, Nazym K. Korbozova and Erika D. Djangalina
Int. J. Mol. Sci. 2024, 25(9), 4991; https://doi.org/10.3390/ijms25094991 (registering DOI) - 03 May 2024
Abstract
The current study investigated the impact of cold stress on the morphological, physiological, and phytochemical properties of Juglans regia L. (J. regia) using in vitro microclone cultures. The study revealed significant stress-induced changes in the production of secondary antioxidant metabolites. According [...] Read more.
The current study investigated the impact of cold stress on the morphological, physiological, and phytochemical properties of Juglans regia L. (J. regia) using in vitro microclone cultures. The study revealed significant stress-induced changes in the production of secondary antioxidant metabolites. According to gas chromatography–mass spectrometry (GC–MS) analyses, the stress conditions profoundly altered the metabolism of J. regia microclones. Although the overall spectrum of metabolites was reduced, the production of key secondary antioxidant metabolites significantly increased. Notably, there was a sevenfold (7×) increase in juglone concentration. These findings are crucial for advancing walnut metabolomics and enhancing our understanding of plant responses to abiotic stress factors. Additionally, study results aid in identifying the role of individual metabolites in these processes, which is essential for developing strategies to improve plant resilience and tolerance to adverse conditions. Full article
(This article belongs to the Special Issue Recent Analysis and Applications of Mass Spectrum in Biochemistry 2.0)
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13 pages, 822 KiB  
Article
The Effect of LENA (Language ENvironment Analysis) for Children with Hearing Loss in Denmark including a Pilot Validation for the Danish Language
by Jane Lignel Josvassen, Victoria Amalie Michael Hedegaard, Mie Lærkegård Jørgensen and Lone Percy-Smith
J. Clin. Med. 2024, 13(9), 2688; https://doi.org/10.3390/jcm13092688 (registering DOI) - 03 May 2024
Abstract
Background/Objectives: This study aimed to investigate whether day-long recordings with Language Environment Analysis (LENA) can be utilized in a hospital-based Auditory Verbal Therapy (AVT) program in Denmark for children with hearing loss and to conduct a pilot validation in the Danish language. Methods [...] Read more.
Background/Objectives: This study aimed to investigate whether day-long recordings with Language Environment Analysis (LENA) can be utilized in a hospital-based Auditory Verbal Therapy (AVT) program in Denmark for children with hearing loss and to conduct a pilot validation in the Danish language. Methods and materials: A license for the LENA system (LENA SP) was purchased, and trials were offered to three families enrolled in the AVT program. Each family made two day-long recordings with 3–4 months in between and received feedback during the therapy sessions. From 18 × 10-min clips randomly pulled out of the recordings, a comparison of adult word counts (AWC) between the LENA algorithm counts and the counts made by two human transcribers was made and used for the pilot validation. Results: LENA proved to be valuable as a guiding tool for Danish parents. Pilot validation showed good correlations and an acceptable limit of agreement (LoA). Conclusions: LENA holds the potential for Danish validation and use in AVT/clinical practice. When used in clinical practice, parents must be informed of the biases and limitations, and possible ethical issues must be considered. Because of the GDPR rules, there is a need to discuss the possibility of implementing this tool clinically in Denmark and the EU. Full article
(This article belongs to the Special Issue Advances in the Diagnosis, Treatment, and Prognosis of Hearing Loss)
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16 pages, 4185 KiB  
Article
Kiwi 4.0: In Vivo Real-Time Monitoring to Improve Water Use Efficiency in Yellow Flesh Actinidia chinensis
by Filippo Vurro, Luigi Manfrini, Alexandra Boini, Manuele Bettelli, Vito Buono, Stefano Caselli, Beniamino Gioli, Andrea Zappettini, Nadia Palermo and Michela Janni
Biosensors 2024, 14(5), 226; https://doi.org/10.3390/bios14050226 (registering DOI) - 03 May 2024
Abstract
This manuscript reports the application of sensors for water use efficiency with a focus on the application of an in vivo OECT biosensor. In two distinct experimental trials, the in vivo sensor bioristor was applied in yellow kiwi plants to monitor, in real-time [...] Read more.
This manuscript reports the application of sensors for water use efficiency with a focus on the application of an in vivo OECT biosensor. In two distinct experimental trials, the in vivo sensor bioristor was applied in yellow kiwi plants to monitor, in real-time and continuously, the changes in the composition and concentration of the plant sap in an open field during plant growth and development. The bioristor response and physiological data, together with other fruit sensor monitoring data, were acquired and combined in both trials, giving a complete picture of the biosphere conditions. A high correlation was observed between the bioristor index (ΔIgs), the canopy cover expressed as the fraction of intercepted PAR (fi_PAR), and the soil water content (SWC). In addition, the bioristor was confirmed to be a good proxy for the occurrence of drought in kiwi plants; in fact, a period of drought stress was identified within the month of July. A novelty of the bioristor measurements was their ability to detect in advance the occurrence of defoliation, thereby reducing yield and quality losses. A plant-based irrigation protocol can be achieved and tailored based on real plant needs, increasing water use sustainability and preserving high-quality standards. Full article
(This article belongs to the Special Issue Biosensing for Environmental Monitoring)
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14 pages, 769 KiB  
Article
Predicting Transcription Factor Binding Sites with Deep Learning
by Nimisha Ghosh, Daniele Santoni, Indrajit Saha and Giovanni Felici
Int. J. Mol. Sci. 2024, 25(9), 4990; https://doi.org/10.3390/ijms25094990 (registering DOI) - 03 May 2024
Abstract
Prediction of binding sites for transcription factors is important to understand how the latter regulate gene expression and how this regulation can be modulated for therapeutic purposes. A consistent number of references address this issue with different approaches, Machine Learning being one of [...] Read more.
Prediction of binding sites for transcription factors is important to understand how the latter regulate gene expression and how this regulation can be modulated for therapeutic purposes. A consistent number of references address this issue with different approaches, Machine Learning being one of the most successful. Nevertheless, we note that many such approaches fail to propose a robust and meaningful method to embed the genetic data under analysis. We try to overcome this problem by proposing a bidirectional transformer-based encoder, empowered by bidirectional long-short term memory layers and with a capsule layer responsible for the final prediction. To evaluate the efficiency of the proposed approach, we use benchmark ChIP-seq datasets of five cell lines available in the ENCODE repository (A549, GM12878, Hep-G2, H1-hESC, and Hela). The results show that the proposed method can predict TFBS within the five different cell lines very well; moreover, cross-cell predictions provide satisfactory results as well. Experiments conducted across cell lines are reinforced by the analysis of five additional lines used only to test the model trained using the others. The results confirm that prediction across cell lines remains very high, allowing an extensive cross-transcription factor analysis to be performed from which several indications of interest for molecular biology may be drawn. Full article
(This article belongs to the Special Issue Deep Learning in Bioinformatics and Biological Data Analysis)
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18 pages, 4753 KiB  
Review
Advances in Catalysts for Urea Electrosynthesis Utilizing CO2 and Nitrogenous Materials: A Mechanistic Perspective
by Mengfei Zhang, Tianjian Feng, Xuanming Che, Yuhan Wang, Pengxian Wang, Mao Chai and Menglei Yuan
Materials 2024, 17(9), 2142; https://doi.org/10.3390/ma17092142 (registering DOI) - 03 May 2024
Abstract
Electrocatalytic urea synthesis from CO2 and nitrogenous substances represents an essential advance for the chemical industry, enabling the efficient utilization of resources and promoting sustainable development. However, the development of electrocatalytic urea synthesis has been severely limited by weak chemisorption, poor activation [...] Read more.
Electrocatalytic urea synthesis from CO2 and nitrogenous substances represents an essential advance for the chemical industry, enabling the efficient utilization of resources and promoting sustainable development. However, the development of electrocatalytic urea synthesis has been severely limited by weak chemisorption, poor activation and difficulties in C–N coupling reactions. In this review, catalysts and corresponding reaction mechanisms in the emerging fields of bimetallic catalysts, MXenes, frustrated Lewis acid–base pairs and heterostructures are summarized in terms of the two central mechanisms of molecule–catalyst interactions as well as chemical bond cleavage and directional coupling, which provide new perspectives for improving the efficiency of electrocatalytic synthesis of urea. This review provides valuable insights to elucidate potential electrocatalytic mechanisms. Full article
(This article belongs to the Section Green Materials)
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10 pages, 246 KiB  
Review
Is Neonatal Uterine Bleeding Involved in Early-Onset Endometriosis?
by Marwan Habiba, Sun-Wei Guo and Giuseppe Benagiano
Biomolecules 2024, 14(5), 549; https://doi.org/10.3390/biom14050549 (registering DOI) - 03 May 2024
Abstract
Background: There has been considerable progress in our understanding of endometriosis, but its pathophysiology remains uncertain. Uncovering the underlying mechanism of the rare instances of endometriosis reported in early postmenarcheal years and in girls before menarche can have wide implications. Methods: We conducted [...] Read more.
Background: There has been considerable progress in our understanding of endometriosis, but its pathophysiology remains uncertain. Uncovering the underlying mechanism of the rare instances of endometriosis reported in early postmenarcheal years and in girls before menarche can have wide implications. Methods: We conducted a literature review of all relevant articles on Medline. Results: In the review, we explore the pathogenetic theories of premenarcheal endometriosis, the role of retrograde menstruation in the adult and its potential role in early-onset disease, as well as the factors that argue against the existence of a link between early-onset endometriosis (EOE) and neonatal uterine bleeding (NUB). Conclusions: As with endometriosis in adult women, the pathogenesis of early-onset disease remains unclear. A link between NUB and EOE is plausible, but there are considerable challenges to collating supporting evidence. The state of our understanding of early uterine development and of the pathophysiology of NUB leaves many unknowns that need exploration. These include proof of the existence of viable endometrial cells or endometrial mesenchymal stem cells in NUB, their passage to the pelvic cavity, their possible response to steroids, and whether they can reside within the pelvic cavity and remain dormant till menarche. Full article
(This article belongs to the Section Molecular Medicine)
11 pages, 2367 KiB  
Article
Amber (Succinite) Extract Enhances Glucose Uptake through the Up-Regulation of ATP and Down-Regulation of ROS in Mouse C2C12 Cells
by Mahmoud Ben Othman, Reiko Takeda, Marie Sekita, Kazuma Okazaki and Kazuichi Sakamoto
Pharmaceuticals 2024, 17(5), 586; https://doi.org/10.3390/ph17050586 (registering DOI) - 03 May 2024
Abstract
Traditionally, amber (Succinite) has been used to alleviate all types of pain, skin allergies, and headaches. However, no studies have been conducted on its antidiabetic and antioxidant effects. In this study, differentiated skeletal muscle C2C12 cells were used to demonstrate the protective effects [...] Read more.
Traditionally, amber (Succinite) has been used to alleviate all types of pain, skin allergies, and headaches. However, no studies have been conducted on its antidiabetic and antioxidant effects. In this study, differentiated skeletal muscle C2C12 cells were used to demonstrate the protective effects of amber (AMB) against H2O2-induced cell death. In addition, the effects of AMB on glucose uptake and ATP production were investigated. Our results showed that AMB at 10, 25, and 50 μg/mL suppressed the elevation of ROS production induced by H2O2 in a dose-dependent manner. Moreover, AMB enhanced glucose utilization in C2C12 cells through the improvement of ATP production and an increase in PGC-1α gene expression resulting in an amelioration of mitochondrial activity. On the other hand, AMB significantly increased the gene expression of glucose transporters GLUT4 and GLUT1. Our finding suggests that AMB can be used as a natural supplement for diabetes treatment and for the promotion of skeletal muscle function. Full article
(This article belongs to the Section Pharmacology)
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14 pages, 10149 KiB  
Article
Smart Textile Impact Sensor for e-Helmet to Measure Head Injury
by Manob Jyoti Saikia and Arar Salim Alkhader
Sensors 2024, 24(9), 2919; https://doi.org/10.3390/s24092919 (registering DOI) - 03 May 2024
Abstract
Concussions, a prevalent public health concern in the United States, often result from mild traumatic brain injuries (mTBI), notably in sports such as American football. There is limited exploration of smart-textile-based sensors for measuring the head impacts associated with concussions in sports and [...] Read more.
Concussions, a prevalent public health concern in the United States, often result from mild traumatic brain injuries (mTBI), notably in sports such as American football. There is limited exploration of smart-textile-based sensors for measuring the head impacts associated with concussions in sports and recreational activities. In this paper, we describe the development and construction of a smart textile impact sensor (STIS) and validate STIS functionality under high magnitude impacts. This STIS can be inserted into helmet cushioning to determine head impact force. The designed 2 × 2 STIS matrix is composed of a number of material layered structures, with a sensing surface made of semiconducting polymer composite (SPC). The SPC dimension was modified in the design iteration to increase sensor range, responsiveness, and linearity. This was to be applicable in high impact situations. A microcontroller board with a biasing circuit was used to interface the STIS and read the sensor’s response. A pendulum test setup was constructed to evaluate various STISs with impact forces. A camera and Tracker software were used to monitor the pendulum swing. The impact forces were calculated by measuring the pendulum bob’s velocity and acceleration. The performance of the various STISs was measured in terms of voltage due to impact force, with forces varying from 180 to 722 N. Through data analysis, the threshold impact forces in the linear range were determined. Through an analysis of linear regression, the sensors’ sensitivity was assessed. Also, a simplified model was developed to measure the force distribution in the 2 × 2 STIS areas from the measured voltages. The results showed that improving the SPC thickness could obtain improved sensor behavior. However, for impacts that exceeded the threshold, the suggested sensor did not respond by reflecting the actual impact forces, but it gave helpful information about the impact distribution on the sensor regardless of the accurate expected linear response. Results showed that the proposed STIS performs satisfactorily within a range and has the potential to be used in the development of an e-helmet with a large STIS matrix that could cover the whole head within the e-helmet. This work also encourages future research, especially on the structure of the sensor that could withstand impacts which in turn could improve the overall range and performance and would accurately measure the impact in concussion-causing impact ranges. Full article
(This article belongs to the Section Wearables)
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22 pages, 3557 KiB  
Article
Enhancing Encapsulation Efficiency of Chavir Essential Oil via Enzymatic Hydrolysis and Ultrasonication of Whey Protein Concentrate–Maltodextrin
by Nasrin Beigmohammadi, Seyed Hadi Peighambardoust, Asad Mohammad Amini and Kazem Alirezalu
Foods 2024, 13(9), 1407; https://doi.org/10.3390/foods13091407 (registering DOI) - 03 May 2024
Abstract
This study focused on the characterization of emulsions and microparticles encapsulating Chavir essential oil (EO) by application of modified whey protein concentrate–maltodextrin (WPC-MD). Different physical, chemical, morphological, thermal, and antioxidant properties and release behavior of spray-dried microparticles were assessed. Antioxidant, solubility, emulsifying, and [...] Read more.
This study focused on the characterization of emulsions and microparticles encapsulating Chavir essential oil (EO) by application of modified whey protein concentrate–maltodextrin (WPC-MD). Different physical, chemical, morphological, thermal, and antioxidant properties and release behavior of spray-dried microparticles were assessed. Antioxidant, solubility, emulsifying, and foaming activities of modified WPC were increased compared to those of primary material. The results indicated that the particle size distribution varied depending on the type of carriers used, with the smallest particles formed by hydrolyzed WPC (HWPC). Binary blends of modified WPC-MD led to improved particle sizes. The spray-drying yield ranged from 64.1% to 85.0%, with higher yields observed for blends of MD with sonicated WPC (UWPC). Microparticles prepared from primary WPC showed irregular and wrinkled surfaces with indentations and pores, indicating a less uniform morphology. The UWPC as a wall material led to microparticles with increased small cracks and holes on their surface. However, HWPC negatively affected the integrity of the microparticles, resulting in broken particles with irregular shapes and surface cracks, indicating poor microcapsule formation. Encapsulating EO using WPC-MD increased the thermal stability of EO significantly, enhancing the degradation temperature of EO by 2 to 2.5-fold. The application of primary WPC (alone or in combination with MD) as wall materials produced particles with the lowest antioxidant properties because the EO cannot migrate to the surface of the particles. Enzymatic hydrolysis of WPC negatively impacted microparticle integrity, potentially increasing EO release. These findings underscore the crucial role of wall materials in shaping the physical, morphological, thermal, antioxidant, and release properties of spray-dried microparticles, offering valuable insights for microencapsulation techniques. Full article
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16 pages, 3652 KiB  
Article
Exploring CDKN1A Upregulation Mechanisms: Insights into Cell Cycle Arrest Induced by NC2603 Curcumin Analog in MCF-7 Breast Cancer Cells
by Felipe Garcia Nishimura, Beatriz Borsani Sampaio, Tatiana Takahasi Komoto, Wanessa Julia da Silva, Mariana Mezencio Gregório da Costa, Gabriela Inforçatti Haddad, Kamila Chagas Peronni, Adriane Feijó Evangelista, Mohammad Hossain, Jonathan R. Dimmock, Brian Bandy, Rene Oliveira Beleboni, Mozart Marins and Ana Lucia Fachin
Int. J. Mol. Sci. 2024, 25(9), 4989; https://doi.org/10.3390/ijms25094989 (registering DOI) - 03 May 2024
Abstract
Breast cancer stands out as one of the most prevalent malignancies worldwide, necessitating a nuanced understanding of its molecular underpinnings for effective treatment. Hormone receptors in breast cancer cells substantially influence treatment strategies, dictating therapeutic approaches in clinical settings, serving as a guide [...] Read more.
Breast cancer stands out as one of the most prevalent malignancies worldwide, necessitating a nuanced understanding of its molecular underpinnings for effective treatment. Hormone receptors in breast cancer cells substantially influence treatment strategies, dictating therapeutic approaches in clinical settings, serving as a guide for drug development, and aiming to enhance treatment specificity and efficacy. Natural compounds, such as curcumin, offer a diverse array of chemical structures with promising therapeutic potential. Despite curcumin’s benefits, challenges like poor solubility and rapid metabolism have spurred the exploration of analogs. Here, we evaluated the efficacy of the curcumin analog NC2603 to induce cell cycle arrest in MCF-7 breast cancer cells and explored its molecular mechanisms. Our findings reveal potent inhibition of cell viability (IC50 = 5.6 μM) and greater specificity than doxorubicin toward MCF-7 vs. non-cancer HaCaT cells. Transcriptome analysis identified 12,055 modulated genes, most notably upregulation of GADD45A and downregulation of ESR1, implicating CDKN1A-mediated regulation of proliferation and cell cycle genes. We hypothesize that the curcumin analog by inducing GADD45A expression and repressing ESR1, triggers the expression of CDKN1A, which in turn downregulates the expression of many important genes of proliferation and the cell cycle. These insights advance our understanding of curcumin analogs’ therapeutic potential, highlighting not just their role in treatment, but also the molecular pathways involved in their activity toward breast cancer cells. Full article
(This article belongs to the Special Issue Molecular Mechanisms and New Therapies for Breast Cancer)
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16 pages, 3896 KiB  
Article
Super-Suppression of Long-Wavelength Phonons in Constricted Nanoporous Geometries
by P. Alex Greaney, S. Aria Hosseini, Laura de Sousa Oliveira, Alathea Davies and Neophytos Neophytou
Nanomaterials 2024, 14(9), 795; https://doi.org/10.3390/nano14090795 (registering DOI) - 03 May 2024
Abstract
In a typical semiconductor material, the majority of the heat is carried by long-wavelength, long-mean-free-path phonons. Nanostructuring strategies to reduce thermal conductivity, a promising direction in the field of thermoelectrics, place scattering centers of size and spatial separation comparable to the mean free [...] Read more.
In a typical semiconductor material, the majority of the heat is carried by long-wavelength, long-mean-free-path phonons. Nanostructuring strategies to reduce thermal conductivity, a promising direction in the field of thermoelectrics, place scattering centers of size and spatial separation comparable to the mean free paths of the dominant phonons to selectively scatter them. The resultant thermal conductivity is in most cases well predicted using Matthiessen’s rule. In general, however, long-wavelength phonons are not as effectively scattered as the rest of the phonon spectrum. In this work, using large-scale molecular-dynamics simulations, non-equilibrium Green’s function simulations, and Monte Carlo simulations, we show that specific nanoporous geometries that create narrow constrictions in the passage of phonons lead to anticorrelated heat currents in the phonon spectrum. This effect results in super-suppression of long-wavelength phonons due to heat trapping and reductions in the thermal conductivity to values well below those predicted by Matthiessen’s rule. Full article
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15 pages, 2257 KiB  
Article
Effects of Leaf Species and Conditioning State of Fresh Leaves on Colonization by Stream and Pond Macroinvertebrates
by Austin R. Hoffman and Erika V. Iyengar
Hydrobiology 2024, 3(2), 85-99; https://doi.org/10.3390/hydrobiology3020007 (registering DOI) - 03 May 2024
Abstract
Fresh, green leaves are increasing as resources in aquatic ecosystems due to more frequent severe spring and summer storms, but research on allochthonous resources typically uses senescent leaves. We examined macroinvertebrate colonization of green leaves of three native deciduous trees (red maple, red [...] Read more.
Fresh, green leaves are increasing as resources in aquatic ecosystems due to more frequent severe spring and summer storms, but research on allochthonous resources typically uses senescent leaves. We examined macroinvertebrate colonization of green leaves of three native deciduous trees (red maple, red oak, and tulip poplar) over two weeks within both a stream and fishless pond. Leaf colonization varied depending on the taxa of leaves and colonizers, submersion time, and the ecosystem examined. Within the stream, the densities of isopods (Lirceus sp.) and snails (mostly the invasive Potamopyrgus antipodarum) did not vary significantly across leaf species. In contrast, mayflies (Tricorythodes sp.) in the stream colonized tulip poplar in greater numbers than red oak leaves, while higher densities of planarians (order Tricladida) occurred within red oak leaves. The numbers of mayflies and snails decreased significantly by the second week, but the densities of isopods and planaria within stream leaf packs were consistent. In contrast, within the pond, significantly more isopods (Caecidotea communis) were collected after the first than after the second week of submersion and in tulip poplar leaves. Clams (Sphaeriidae) in the pond, on the other hand, were more prevalent in the second week but did not discriminate among leaf species. While the number of leeches (mostly Helobdella stagnalis) was consistent across weeks, significantly fewer leeches resided within tulip poplar leaves than within red oak leaves. Our results suggest that there are no consistent colonization-preference rankings of species of fresh leaves across freshwater benthic macroinvertebrate taxa. Even within a functional feeding group (e.g., the two types of isopods and snails, all detritivore-herbivores), there were differences in colonization patterns. Therefore, increased allochthonous inputs of fresh leaf litter due to severe spring- and summer-time storms are likely to promote the populations of various taxa to different extents. Full article
(This article belongs to the Special Issue Ecosystem Disturbance in Small Streams)
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17 pages, 358 KiB  
Article
Sodium Chloride Tolerance during Germination and Seedling Stages of Tomato (Solanum lycopersicum L.) Lines Native to Mexico
by Ariadna Goreti López-Méndez, Juan Enrique Rodríguez-Pérez, José Oscar Mascorro-Gallardo, Jaime Sahagún-Castellanos and Ricardo Lobato-Ortiz
Horticulturae 2024, 10(5), 466; https://doi.org/10.3390/horticulturae10050466 (registering DOI) - 03 May 2024
Abstract
Tomato is considered moderately sensitive to salinity, which detracts from the quality and yield of its fruit; therefore, wild populations have been used as a genetic resource. The aim of this research was to identify lines derived from wild tomato populations with tolerance [...] Read more.
Tomato is considered moderately sensitive to salinity, which detracts from the quality and yield of its fruit; therefore, wild populations have been used as a genetic resource. The aim of this research was to identify lines derived from wild tomato populations with tolerance to salinity during the germination and seedling stages. During germination, 52 wild lines and 2 commercial hybrids (Imperial®, Reserva®) were subjected to treatment with 150 mM and 0 mM NaCl and evaluated. The test was carried out for 20 days in a germination chamber with constant darkness, a temperature of 25 ± 2 °C and relative humidity conditions of 80 ± 4%. At the seedling stage, 22 wild tomato lines with the best performance in the germination test and 2 commercial hybrids (Imperial®, Topanga®) were evaluated for 12 days in a floating raft system. Concentrations of 175 mM and 0 mM of NaCl were used. During germination, the saline condition decreased the germination percentage (65.2%), speed of germination (88.2%), steam length (72.5%), root length (46.56%), number of normal plants (59.5%), stem dry matter (68.78%), root dry matter (61.99%), and total dry matter (67.1%). At the seedling stage, this condition decreased (p < 0.05) the aerial part dry matter (46.37%), leaf area (59.35%), root length (42.43%), final plant height (40.24%), and growth rate (71.42%). Seventeen tolerant genotypes were identified in one of the two developmental stages, while one genotype showed tolerance in both stages. These results indicate that there are different response mechanisms in each developmental stage. Native tomatoes play an important role in the identification of tolerant genotypes since they can be used as genetic resources for obtaining commercial genotypes with salt tolerance. Full article
16 pages, 5372 KiB  
Article
Inhibiting AGS Cancer Cell Proliferation through the Combined Application of Aucklandiae Radix and Hyperthermia: Investigating the Roles of Heat Shock Proteins and Reactive Oxygen Species
by Chae Ryeong Ahn, In Jin Ha, Jai-Eun Kim, Kwang Seok Ahn, Jinbong Park and Seung Ho Baek
Antioxidants 2024, 13(5), 564; https://doi.org/10.3390/antiox13050564 (registering DOI) - 03 May 2024
Abstract
Cancer is a major global health concern. To address this, the combination of traditional medicine and newly appreciated therapeutic modalities has been gaining considerable attention. This study explores the combined effects of Aucklandiae Radix (AR) and 43 °C hyperthermia (HT) on human gastric [...] Read more.
Cancer is a major global health concern. To address this, the combination of traditional medicine and newly appreciated therapeutic modalities has been gaining considerable attention. This study explores the combined effects of Aucklandiae Radix (AR) and 43 °C hyperthermia (HT) on human gastric adenocarcinoma (AGS) cell proliferation and apoptosis. We investigated the synergistic effects of AR and HT on cell viability, apoptosis, cell cycle progression, and reactive oxygen species (ROS)-dependent mechanisms. Our findings suggest that the combined treatment led to a notable decrease in AGS cell viability and increased apoptosis. Furthermore, cell cycle arrest at the G2/M phase contributed to the inhibition of cancer cell proliferation. Notably, the roles of heat shock proteins (HSPs) were highlighted, particularly in the context of ROS regulation and the induction of apoptosis. Overexpression of HSPs was observed in cells subjected to HT, whereas their levels were markedly reduced following AR treatment. The suppression of HSPs and the subsequent increase in ROS levels appeared to contribute to the activation of apoptosis, suggesting a potential role for HSPs in the combined therapy’s anti-cancer mechanisms. These findings provide valuable insights into the potential of integrating AR and HT in cancer and HSPs. Full article
(This article belongs to the Special Issue Natural Antioxidants in Obesity and Related Diseases—2nd Edition)
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23 pages, 1152 KiB  
Review
Disuse-Induced Muscle Fatigue: Facts and Assumptions
by Xenia V. Sergeeva, Irina D. Lvova and Kristina A. Sharlo
Int. J. Mol. Sci. 2024, 25(9), 4984; https://doi.org/10.3390/ijms25094984 (registering DOI) - 03 May 2024
Abstract
Skeletal muscle unloading occurs during a wide range of conditions, from space flight to bed rest. The unloaded muscle undergoes negative functional changes, which include increased fatigue. The mechanisms of unloading-induced fatigue are far from complete understanding and cannot be explained by muscle [...] Read more.
Skeletal muscle unloading occurs during a wide range of conditions, from space flight to bed rest. The unloaded muscle undergoes negative functional changes, which include increased fatigue. The mechanisms of unloading-induced fatigue are far from complete understanding and cannot be explained by muscle atrophy only. In this review, we summarize the data concerning unloading-induced fatigue in different muscles and different unloading models and provide several potential mechanisms of unloading-induced fatigue based on recent experimental data. The unloading-induced changes leading to increased fatigue include both neurobiological and intramuscular processes. The development of intramuscular fatigue seems to be mainly contributed by the transformation of soleus muscle fibers from a fatigue-resistant, “oxidative“ “slow” phenotype to a “fast” “glycolytic“ one. This process includes slow-to-fast fiber-type shift and mitochondrial density decline, as well as the disruption of activating signaling interconnections between slow-type myosin expression and mitochondrial biogenesis. A vast pool of relevant literature suggests that these events are triggered by the inactivation of muscle fibers in the early stages of muscle unloading, leading to the accumulation of high-energy phosphates and calcium ions in the myoplasm, as well as NO decrease. Disturbance of these secondary messengers leads to structural changes in muscles that, in turn, cause increased fatigue. Full article
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34 pages, 1308 KiB  
Review
IL-8 (CXCL8) Correlations with Psychoneuroimmunological Processes and Neuropsychiatric Conditions
by Anton Shkundin and Angelos Halaris
J. Pers. Med. 2024, 14(5), 488; https://doi.org/10.3390/jpm14050488 (registering DOI) - 03 May 2024
Abstract
Interleukin-8 (IL-8/CXCL8), an essential CXC chemokine, significantly influences psychoneuroimmunological processes and affects neurological and psychiatric health. It exerts a profound effect on immune cell activation and brain function, suggesting potential roles in both neuroprotection and neuroinflammation. IL-8 production is stimulated by several factors, [...] Read more.
Interleukin-8 (IL-8/CXCL8), an essential CXC chemokine, significantly influences psychoneuroimmunological processes and affects neurological and psychiatric health. It exerts a profound effect on immune cell activation and brain function, suggesting potential roles in both neuroprotection and neuroinflammation. IL-8 production is stimulated by several factors, including reactive oxygen species (ROS) known to promote inflammation and disease progression. Additionally, CXCL8 gene polymorphisms can alter IL-8 production, leading to potential differences in disease susceptibility, progression, and severity across populations. IL-8 levels vary among neuropsychiatric conditions, demonstrating sensitivity to psychosocial stressors and disease severity. IL-8 can be detected in blood circulation, cerebrospinal fluid (CSF), and urine, making it a promising candidate for a broad-spectrum biomarker. This review highlights the need for further research on the diverse effects of IL-8 and the associated implications for personalized medicine. A thorough understanding of its complex role could lead to the development of more effective and personalized treatment strategies for neuropsychiatric conditions. Full article
(This article belongs to the Section Disease Biomarker)
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15 pages, 3095 KiB  
Article
Land Characterization System Software: Implementing Land Cover Ontology
by Nicola Mosca, Fatima Mushtaq, Victor Munene, Peter Maleh, Ndyebo Mnyanda, Rashed Jalal and Amit Ghosh
Land 2024, 13(5), 617; https://doi.org/10.3390/land13050617 (registering DOI) - 03 May 2024
Abstract
Land cover (LC) plays a crucial role in the monitoring and planning of the environment among various domains, such as climate change, the management of natural resources, and sustainable development. However, inconsistent LC legends hamper their usability, particularly as technologies, like remote sensing, [...] Read more.
Land cover (LC) plays a crucial role in the monitoring and planning of the environment among various domains, such as climate change, the management of natural resources, and sustainable development. However, inconsistent LC legends hamper their usability, particularly as technologies, like remote sensing, rapidly improve data quality and quantity for extracting valuable information. Ontologies play a pivotal role in improving the standardization and harmonization of different LC taxonomies, enabling both a reduction in inconsistencies and a way to harness ever-increasing computing power to help scientists provide faster and better answers. However, using ontologies without suitable tools, especially when expressive power is matched with complexity, can prove a daunting task. This paper introduces the land characterization system (LCHS), an innovative tool built to support the ontology discussed in the ISO 19144-2 standard, known as Land Cover Meta Language (LCML). The LCHS can help streamline and speed up the creation and editing of LC legends using a data-driven design approach. Full article
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13 pages, 844 KiB  
Article
Production Prediction Model of Tight Gas Well Based on Neural Network Driven by Decline Curve and Data
by Minjing Chen, Zhan Qu, Wei Liu, Shanjie Tang, Zhengkai Shang, Yanfei Ren and Jinliang Han
Processes 2024, 12(5), 932; https://doi.org/10.3390/pr12050932 (registering DOI) - 03 May 2024
Abstract
The accurate prediction of gas well production is one of the key factors affecting the economical and efficient development of tight gas wells. The traditional oil and gas well production prediction method assumes strict conditions and has a low prediction accuracy in actual [...] Read more.
The accurate prediction of gas well production is one of the key factors affecting the economical and efficient development of tight gas wells. The traditional oil and gas well production prediction method assumes strict conditions and has a low prediction accuracy in actual field applications. At present, intelligent algorithms based on big data have been applied in oil and gas well production prediction, but there are still some limitations. Only learning from data leads to the poor generalization ability and anti-interference ability of prediction models. To solve this problem, a production prediction method of tight gas wells based on the decline curve and data-driven neural network is established in this paper. Based on the actual production data of fractured horizontal wells in three tight gas reservoirs in the Ordos Basin, the prediction effect of the Arps decline curve model, the SPED decline curve model, the MFF decline curve model, and the combination of the decline curve and data-driven neural network model is compared and analyzed. The results of the case analysis show that the MFF model and the combined data-driven model have the highest accuracy, the average absolute percentage error is 14.11%, and the root-mean-square error is 1.491, which provides a new method for the production prediction of tight gas wells in the Ordos Basin. Full article
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13 pages, 1868 KiB  
Article
CRISPR Screen Reveals PACT as a Pro-Viral Factor for Dengue Viral Replication
by Shwetha Shivaprasad, Wenjie Qiao, Kuo-Feng Weng, Pavithra Umashankar, Jan E. Carette and Peter Sarnow
Viruses 2024, 16(5), 725; https://doi.org/10.3390/v16050725 (registering DOI) - 03 May 2024
Abstract
The dengue virus is a single-stranded, positive-sense RNA virus that infects ~400 million people worldwide. Currently, there are no approved antivirals available. CRISPR-based screening methods have greatly accelerated the discovery of host factors that are essential for DENV infection and that can be [...] Read more.
The dengue virus is a single-stranded, positive-sense RNA virus that infects ~400 million people worldwide. Currently, there are no approved antivirals available. CRISPR-based screening methods have greatly accelerated the discovery of host factors that are essential for DENV infection and that can be targeted in host-directed antiviral interventions. In the present study, we performed a focused CRISPR (Clustered Regularly Interspaced Palindromic Repeats) library screen to discover the key host factors that are essential for DENV infection in human Huh7 cells and identified the Protein Activator of Interferon-Induced Protein Kinase (PACT) as a novel pro-viral factor for DENV. PACT is a double-stranded RNA-binding protein generally known to activate antiviral responses in virus-infected cells and block viral replication. However, in our studies, we observed that PACT plays a pro-viral role in DENV infection and specifically promotes viral RNA replication. Knockout of PACT resulted in a significant decrease in DENV RNA and protein abundances in infected cells, which was rescued upon ectopic expression of full-length PACT. An analysis of global gene expression changes indicated that several ER-associated pro-viral genes such as ERN1, DDIT3, HERPUD1, and EIF2AK3 are not upregulated in DENV-infected PACT knockout cells as compared to infected wildtype cells. Thus, our study demonstrates a novel role for PACT in promoting DENV replication, possibly through modulating the expression of ER-associated pro-viral genes. Full article
(This article belongs to the Special Issue Host Cell-Virus Interaction, 3rd Edition)
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12 pages, 857 KiB  
Article
The Role of Glutathione Transferase Omega-Class Variant Alleles in Individual Susceptibility to Ovarian Cancer
by Petar Simic, Vesna Coric, Igor Pljesa, Ana Savic-Radojevic, Nebojsa Zecevic, Jovana Kocic, Tatjana Simic, Vladimir Pazin and Marija Pljesa-Ercegovac
Int. J. Mol. Sci. 2024, 25(9), 4986; https://doi.org/10.3390/ijms25094986 (registering DOI) - 03 May 2024
Abstract
The tumor microenvironment is affected by reactive oxygen species and has been suggested to have an important role in ovarian cancer (OC) tumorigenesis. The role of glutathione transferases (GSTs) in the maintenance of redox balance is considered as an important contributing factor in [...] Read more.
The tumor microenvironment is affected by reactive oxygen species and has been suggested to have an important role in ovarian cancer (OC) tumorigenesis. The role of glutathione transferases (GSTs) in the maintenance of redox balance is considered as an important contributing factor in cancer, including OC. Furthermore, GSTs are mostly encoded by highly polymorphic genes, which further highlights their potential role in OC, known to originate from accumulated genetic changes. Since the potential relevance of genetic variations in omega-class GSTs (GSTO1 and GSTO2), with somewhat different activities such as thioltransferase and dehydroascorbate reductase activity, has not been clarified as yet in terms of susceptibility to OC, we aimed to investigate whether the presence of different GSTO1 and GSTO2 genetic variants, individually or combined, might represent determinants of risk for OC development. Genotyping was performed in 110 OC patients and 129 matched controls using a PCR-based assay for genotyping single nucleotide polymorphisms. The results of our study show that homozygous carriers of the GSTO2 variant G allele are at an increased risk of OC development in comparison to the carriers of the referent genotype (OR1 = 2.16, 95% CI: 0.88–5.26, p = 0.08; OR2 = 2.49, 95% CI: 0.93–6.61, p = 0.06). Furthermore, individuals with GST omega haplotype H2, meaning the concomitant presence of the GSTO1*A and GSTO2*G alleles, are more susceptible to OC development, while carriers of the H4 (*A*A) haplotype exhibited lower risk of OC when crude and adjusted haplotype analysis was performed (OR1 = 0.29; 95% CI: 0.12–0.70; p = 0.007 and OR2 = 0.27; 95% CI: 0.11–0.67; p = 0.0054). Overall, our results suggest that GSTO locus variants may confer OC risk. Full article
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12 pages, 11249 KiB  
Article
Advancing Lip Augmentation: State-of-the-Art 2D and 3D Analysis for Assessing Volume Enhancement and Lip Line Redefinition
by Ritamaria Di Lorenzo, Lucia Ricci, Eleonora Vardaro, Teresa Di Serio, Elena Morelli and Sonia Laneri
Cosmetics 2024, 11(3), 70; https://doi.org/10.3390/cosmetics11030070 (registering DOI) - 03 May 2024
Abstract
Over the preceding five decades, there has been a noticeable surge in the pursuit of achieving voluminous and well-defined lips. This trend has prompted an escalating number of individuals to undergo lip augmentation procedures, aiming for a natural three-dimensional enhancement of lip volume [...] Read more.
Over the preceding five decades, there has been a noticeable surge in the pursuit of achieving voluminous and well-defined lips. This trend has prompted an escalating number of individuals to undergo lip augmentation procedures, aiming for a natural three-dimensional enhancement of lip volume and distinct vermilion borders. Despite the proliferation of lip augmentation techniques, there remains a dearth of comprehensive investigations into their precise effects on the three-dimensional structural integrity of the lips. This research endeavors to address this gap by employing stereophotogrammetry as a quantitative tool to scrutinize lip augmentation outcomes and to appraise the efficacy of lip plumpers. The study methodology involves a comparative analysis of lip dimensions among subjects treated with a commercial lip plumper using multi-spectral imaging for lip dimension assessment, coupled with markerless tracking technology and 3D interpolating surface methodology to analyze lip volume and shape. Additionally, the study evaluated lip youth state, including moisture level, softness, firmness, and tissue density. The demand for lip augmentation procedures is driven by perceived advantages such as quick recovery and minimal risk. Therefore, it is crucial to substantiate their efficacy with robust findings. The investigation suggests that both 3D and 2D stereophotogrammetry techniques are reliable for evaluating lip size before and after augmentation, whether through cosmetic or aesthetic approaches. Overall, the study provides a comprehensive analysis of a lip treatment aimed at enhancing volume and redesigning lip lines. It demonstrates that stereophotogrammetry is effective for assessing 3D lip dimensions and their correlation with internal lip structure. This research could be particularly valuable for evaluating the efficacy and duration of various lip enhancement techniques, including dermal fillers, implants, and topical cosmetic formulations, offering quantitative and reproducible assessments over time. Full article
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22 pages, 23766 KiB  
Article
Fine-Grained Feature Perception for Unmanned Aerial Vehicle Target Detection Algorithm
by Shi Liu, Meng Zhu, Rui Tao and Honge Ren
Drones 2024, 8(5), 181; https://doi.org/10.3390/drones8050181 (registering DOI) - 03 May 2024
Abstract
Unmanned aerial vehicle (UAV) aerial images often present challenges such as small target sizes, high target density, varied shooting angles, and dynamic poses. Existing target detection algorithms exhibit a noticeable performance decline when confronted with UAV aerial images compared to general scenes. This [...] Read more.
Unmanned aerial vehicle (UAV) aerial images often present challenges such as small target sizes, high target density, varied shooting angles, and dynamic poses. Existing target detection algorithms exhibit a noticeable performance decline when confronted with UAV aerial images compared to general scenes. This paper proposes an outstanding small target detection algorithm for UAVs, named Fine-Grained Feature Perception YOLOv8s-P2 (FGFP-YOLOv8s-P2), based on YOLOv8s-P2 architecture. We specialize in improving inspection accuracy while meeting real-time inspection requirements. First, we enhance the targets’ pixel information by utilizing slice-assisted training and inference techniques, thereby reducing missed detections. Then, we propose a feature extraction module with deformable convolutions. Decoupling the learning process of offset and modulation scalar enables better adaptation to variations in the size and shape of diverse targets. In addition, we introduce a large kernel spatial pyramid pooling module. By cascading convolutions, we leverage the advantages of large kernels to flexibly adjust the model’s attention to various regions of high-level feature maps, better adapting to complex visual scenes and circumventing the cost drawbacks associated with large kernels. To match the excellent real-time detection performance of the baseline model, we propose an improved Random FasterNet Block. This block introduces randomness during convolution and captures spatial features of non-linear transformation channels, enriching feature representations and enhancing model efficiency. Extensive experiments and comprehensive evaluations on the VisDrone2019 and DOTA-v1.0 datasets demonstrate the effectiveness of FGFP-YOLOv8s-P2. This achievement provides robust technical support for efficient small target detection by UAVs in complex scenarios. Full article
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18 pages, 447 KiB  
Article
Transition, Emulation and Dispute over Authority in the Bábí/Bahá’í Faith
by Siarhei A. Anoshka
Religions 2024, 15(5), 577; https://doi.org/10.3390/rel15050577 (registering DOI) - 03 May 2024
Abstract
This text attempts to analyze the competition for the leadership role in the young Bábí religious community after the execution of their leader, Báb (1819–1850). With the elimination of many leaders, a small group stood out who were willing to replace the absent [...] Read more.
This text attempts to analyze the competition for the leadership role in the young Bábí religious community after the execution of their leader, Báb (1819–1850). With the elimination of many leaders, a small group stood out who were willing to replace the absent leader. Two preferences arose within the Babi community: forceful and pacifist. Motivated by the hunger to settle scores, supporters of the first option wanted to fight and reach the victory predicted in the Shiʻite tradition. The second option’s followers, however, rejected all acts of violence, preferring to look at the Báb’s texts, calling their worshipers to lofty ideals as a method of luring other people to the new religion. Presently, after the sentencing to punishment of the Prophet Báb, several people emerged among the former Shiʻites’ group who made claims to authority in the community. Nevertheless, quite quickly, the main confrontation came down to a conflict between two outstanding personalities. Mírzá Yaḥyá Núrí (1831–1912), representing the radical trend of Babism, nicknamed Ṣubḥ-i Azal, was fighting for leadership with Mírzá Ḥusajn-‘Alí Núrí (1817–1892), his half-brother, belonging to the peaceful Bábí party. This article describing the rivalry between two relatives for the leadership position also allows us to see the process of writing down, codifying and spreading the young Bayán religion. Full article

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