The 2023 MDPI Annual Report has
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17 pages, 2943 KiB  
Article
Synthesis, Crystal Structure, and Optical and Magnetic Properties of the New Quaternary Erbium Telluride EuErCuTe3: Experiment and Calculation
by Anna V. Ruseikina, Maxim V. Grigoriev, Ralf J. C. Locke, Vladimir A. Chernyshev, Alexander A. Garmonov and Thomas Schleid
Materials 2024, 17(10), 2284; https://doi.org/10.3390/ma17102284 (registering DOI) - 11 May 2024
Abstract
This paper reports for the first time on a new layered magnetic heterometallic erbium telluride EuErCuTe3. Single crystals of the compound were obtained from the elements at 1120 K using CsI as a flux. The crystal structure of EuErCuTe3 was [...] Read more.
This paper reports for the first time on a new layered magnetic heterometallic erbium telluride EuErCuTe3. Single crystals of the compound were obtained from the elements at 1120 K using CsI as a flux. The crystal structure of EuErCuTe3 was solved in the space group Cmcm (a = 4.3086(3) Å, b = 14.3093(9) Å, and c = 11.1957(7) Å) with the KZrCuS3 structure type. In the orthorhombic structure of erbium telluride, distorted octahedra ([ErTe6]9−) form two-dimensional layers (Er(Te1)2/2e(Te2)4/2k)2, while distorted tetrahedra ([CuTe4]7−) form one-dimensionally connected substructures (Cu(Te1)2/2e(Te2)2/1t51) along the [100] direction. The distorted octahedra and tetrahedra form parallel two-dimensional layers (CuErTe322) between which Eu2+ ions are located in a trigonal-prismatic coordination environment (EuTe610). The trigonal prisms are connected by faces, forming chains (Eu(Te1)2/2(Te2)4/221) along the [100] direction. Regularities in the variations in structural parameters were established in the series of erbium chalcogenides (EuErCuCh3 (Ch = S, Se, and Te)) and tellurides (EuLnCuTe3 (Ln = Gd, Er, and Lu)). Ab-initio calculations of the crystal structure, phonon spectrum, and elastic properties of the compound EuErCuTe3 were performed. The types and wavenumbers of fundamental modes were determined, and the involvement of ions in the IR and Raman modes was assessed. The experimental Raman spectra were interpreted. The telluride EuErCuTe3 at temperatures below 4.2 K was ferrimagnetic, as were the sulfide and selenide derivatives (EuErCuCh3 (Ch = S and Se)). Its experimental magnetic characteristics were close to the calculated ones. The decrease in the magnetic phase transition temperature in the series of the erbium chalcogenides was discovered. Full article
(This article belongs to the Special Issue Obtaining and Characterization of New Materials, Volume IV)
17 pages, 2072 KiB  
Article
Extraction of Antioxidants from Brown Macroalgae Fucus spiralis
by André Horta, Ana M. Duarte, Sónia Barroso, Filipa R. Pinto, Susana Mendes, Vasco Lima, Jorge A. Saraiva and Maria M. Gil
Molecules 2024, 29(10), 2271; https://doi.org/10.3390/molecules29102271 (registering DOI) - 11 May 2024
Abstract
In this study, different extraction methods and conditions were used for the extraction of antioxidants from brown macroalgae Fucus spiralis. The extraction methodologies used were ultrasound-assisted extraction (ultrasonic bath and ultrasonic probe), extraction with a vortex, extraction with an Ultra-Turrax® homogenizer, [...] Read more.
In this study, different extraction methods and conditions were used for the extraction of antioxidants from brown macroalgae Fucus spiralis. The extraction methodologies used were ultrasound-assisted extraction (ultrasonic bath and ultrasonic probe), extraction with a vortex, extraction with an Ultra-Turrax® homogenizer, and high-pressure-assisted extraction. The extracts were analyzed for their total phenolic content (TPC) and their antioxidant activity, and evaluated through the 2,2-difenil-1-picrilhidrazil (DPPH) free radical scavenging method and ferric reducing antioxidant power (FRAP) assay. Ultrasonic probe-assisted extraction yielded the highest values of TPC (94.78–474.16 mg gallic acid equivalents/g extract). Regarding the antioxidant activity, vortex-assisted extraction gave the best DPPH results (IC50 1.89–16 µg/mL), while the highest FRAP results were obtained using the Ultra-Turrax® homogenizer (502.16–1188.81 μmol ascorbic acid equivalents/g extract). For each extraction method, response surface methodology was used to analyze the influence of the experimental conditions “extraction time” (t), “biomass/solvent ratio” (R), “solvent” (S, water % in water/ethanol mixture), and “pressure” (P) on TPC, DPPH, and FRAP of the F. spiralis extracts. In general, higher TPC content and higher antioxidant capacity (lower IC50 and higher FRAP) were obtained with higher R, t, and P, and lower S (higher ethanol %). The model regarding the combined effects of independent variables t, R, and S on the FRAP response values for vortex-assisted extractions best fitted the experimental data (R2 0.957), with optimal extraction conditions of t = 300 s, R = 50 g, and S = 25%. Full article
(This article belongs to the Special Issue Marine Natural Products in Food Chemistry)
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30 pages, 1124 KiB  
Article
A Fundamental Duality in the Exact Sciences: The Application to Quantum Mechanics
by David Ellerman
Foundations 2024, 4(2), 175-204; https://doi.org/10.3390/foundations4020013 (registering DOI) - 11 May 2024
Abstract
There is a fundamental subsets–partitions duality that runs through the exact sciences. In more concrete terms, it is the duality between elements of a subset and the distinctions of a partition. In more abstract terms, it is the reverse-the-arrows of category theory that [...] Read more.
There is a fundamental subsets–partitions duality that runs through the exact sciences. In more concrete terms, it is the duality between elements of a subset and the distinctions of a partition. In more abstract terms, it is the reverse-the-arrows of category theory that provides a major architectonic of mathematics. The paper first develops the duality between the Boolean logic of subsets and the logic of partitions. Then, probability theory and information theory (as based on logical entropy) are shown to start with the quantitative versions of subsets and partitions. Some basic universal mapping properties in the category of Sets are developed that precede the abstract duality of category theory. But by far the main application is to the clarification and interpretation of quantum mechanics. Since classical mechanics illustrates the Boolean worldview of full distinctness, it is natural that quantum mechanics would be based on the indefiniteness of its characteristic superposition states, which is modeled at the set level by partitions (or equivalence relations). This approach to interpreting quantum mechanics is not a jury-rigged or ad hoc attempt at the interpretation of quantum mechanics but is a natural application of the fundamental duality running throughout the exact sciences. Full article
(This article belongs to the Section Physical Sciences)
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24 pages, 624 KiB  
Systematic Review
Domestic Violence Victimization Risk Assessment in Children and Adolescents: A Systematic Review
by Daniela Rita Ribeiro Cunha, Maria Emília Leitão and Ana Isabel Sani
Soc. Sci. 2024, 13(5), 259; https://doi.org/10.3390/socsci13050259 (registering DOI) - 11 May 2024
Abstract
Background: Risk assessment is the process of collecting information towards the goal of protecting the physical and psychological integrity of the victim, taking into account factors associated with violence to assess the severity of violence, protect victims, and prevent recidivism. This type of [...] Read more.
Background: Risk assessment is the process of collecting information towards the goal of protecting the physical and psychological integrity of the victim, taking into account factors associated with violence to assess the severity of violence, protect victims, and prevent recidivism. This type of risk assessment is commonly used in situations of domestic violence and needs to be adjusted for the contexts of child and adolescent victimization. Objective: Resources and standardized criteria to guide a child-centered domestic violence victimization risk assessment are lacking. This systematic review aimed to evaluate the instruments, risk factors and outcomes identified in the literature for situations of domestic violence involving children. Methods: Following the PRISMA protocol, 313 articles from the EBSCO, Web of Science and PubMed databases were screened and 13 were identified for analysis. Results: An analysis of the characteristics of some instruments created to assess the impact of domestic violence involving children shows that caregivers’ risk factors are strong predictors of child abuse, highlighting the interrelationship with other factors, as well as warning about the cumulative risk, including child homicide. Conclusions: The literature confirms the importance of family system factors regarding the risk of the mistreatment of children in situations of domestic violence. Risk assessment must cater to the needs and specificities of individual children. Full article
(This article belongs to the Section Crime and Justice)
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18 pages, 3073 KiB  
Article
A Causality-Aware Perspective on Domain Generalization via Domain Intervention
by Youjia Shao, Shaohui Wang and Wencang Zhao
Electronics 2024, 13(10), 1891; https://doi.org/10.3390/electronics13101891 (registering DOI) - 11 May 2024
Abstract
Most mainstream statistical models will achieve poor performance in Out-Of-Distribution (OOD) generalization. This is because these models tend to learn the spurious correlation between data and will collapse when the domain shift exists. If we want artificial intelligence (AI) to make great strides [...] Read more.
Most mainstream statistical models will achieve poor performance in Out-Of-Distribution (OOD) generalization. This is because these models tend to learn the spurious correlation between data and will collapse when the domain shift exists. If we want artificial intelligence (AI) to make great strides in real life, the current focus needs to be shifted to the OOD problem of deep learning models to explore the generalization ability under unknown environments. Domain generalization (DG) focusing on OOD generalization is proposed, which is able to transfer the knowledge extracted from multiple source domains to the unseen target domain. We are inspired by intuitive thinking about human intelligence relying on causality. Unlike relying on plain probability correlations, we apply a novel causal perspective to DG, which can improve the OOD generalization ability of the trained model by mining the invariant causal mechanism. Firstly, we construct the inclusive causal graph for most DG tasks through stepwise causal analysis based on the data generation process in the natural environment and introduce the reasonable Structural Causal Model (SCM). Secondly, based on counterfactual inference, causal semantic representation learning with domain intervention (CSRDN) is proposed to train a robust model. In this regard, we generate counterfactual representations for different domain interventions, which can help the model learn causal semantics and develop generalization capacity. At the same time, we seek the Pareto optimal solution in the optimization process based on the loss function to obtain a more advanced training model. Extensive experimental results of Rotated MNIST and PACS as well as VLCS datasets verify the effectiveness of the proposed CSRDN. The proposed method can integrate causal inference into domain generalization by enhancing interpretability and applicability and brings a boost to challenging OOD generalization problems. Full article
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24 pages, 1274 KiB  
Article
Significance of Single-Interval Discrete Attributes: Case Study on Two-Level Discretisation
by Urszula Stańczyk, Beata Zielosko and Grzegorz Baron
Appl. Sci. 2024, 14(10), 4088; https://doi.org/10.3390/app14104088 (registering DOI) - 11 May 2024
Abstract
Supervised discretisation is widely considered as far more advantageous than unsupervised transformation of attributes, because it helps to preserve the informative content of a variable, which is useful in classification. After discretisation, based on employed criteria, some attributes can be found irrelevant, and [...] Read more.
Supervised discretisation is widely considered as far more advantageous than unsupervised transformation of attributes, because it helps to preserve the informative content of a variable, which is useful in classification. After discretisation, based on employed criteria, some attributes can be found irrelevant, and all their values can be represented in a discrete domain by a single interval. In consequence, such attributes are removed from considerations, and no knowledge is mined from them. The paper presents research focused on extended transformations of attribute values, thus combining supervised with unsupervised discretisation strategies. For all variables with single intervals returned from supervised algorithms, the ranges of values were transformed by unsupervised methods with varying numbers of bins. Resulting variants of the data were subjected to selected data mining techniques, and the performance of a group of classifiers was evaluated and compared. The experiments were performed on a stylometric task of authorship attribution. Full article
(This article belongs to the Section Computing and Artificial Intelligence)
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9 pages, 1185 KiB  
Article
New Method for Photoactive Cement Preparation—Selected Mechanical Properties and Photocatalytic Activity of New Materials
by Magdalena Janus, Jarosław Strzałkowski, Kamila Zając and Ewelina Kusiak-Nejman
Materials 2024, 17(10), 2285; https://doi.org/10.3390/ma17102285 (registering DOI) - 11 May 2024
Abstract
In this study, a new method of obtaining photoactive cements is presented. The goal was to obtain photoactive cements using a method that could reduce the production costs. In the study, an intermediate product from the production of titanium dioxide using the sulfate [...] Read more.
In this study, a new method of obtaining photoactive cements is presented. The goal was to obtain photoactive cements using a method that could reduce the production costs. In the study, an intermediate product from the production of titanium dioxide using the sulfate method, taken from the installation before the calcination process, was used to obtain photoactive cements. Laboratory conditions corresponding to introducing this amorphous TiO2 into cement clinker during its cooling were simulated. The study shows that the temperature from 300 to 800 °C and the time of amorphous TiO2 contact with the cement clinker within 30 min is sufficient to obtain a photoactive cement. The highest photocatalytic activity was obtained for the material with 5 wt.% TiO2 content, and the method used did not cause a significant decrease in the bending and compressive strength of the new photoactive cements. The obtained materials were characterized by determining the crystal size of the TiO2, the sulfur content and the photocatalytic activity during NO decomposition under UV radiation. The bending and compressive strength were measured. The influence of the addition of photocatalysts on the beginning and end of the setting time was also investigated. Full article
(This article belongs to the Special Issue New Findings in Cementitious Materials (2nd Edition))
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16 pages, 2128 KiB  
Article
A Charging and Discharging Data Privacy Protection Scheme for V2G Networks Based on Cloud–Fog-End
by Baoyi Wang, Ziyan Shi and Shaomin Zhang
Appl. Sci. 2024, 14(10), 4096; https://doi.org/10.3390/app14104096 (registering DOI) - 11 May 2024
Abstract
Due to the openness of the vehicle-to-grid (V2G) network, the upload of charging and discharging data faces severe security challenges such as eavesdropping, tampering, and forgery. These challenges can lead to privacy breaches, transmission delays, and service quality degradation. To address these issues, [...] Read more.
Due to the openness of the vehicle-to-grid (V2G) network, the upload of charging and discharging data faces severe security challenges such as eavesdropping, tampering, and forgery. These challenges can lead to privacy breaches, transmission delays, and service quality degradation. To address these issues, a V2G network architecture based on cloud–fog-end is designed, and a charging and discharging data privacy protection scheme is proposed. We employ a pseudonym mechanism to achieve the conditional privacy protection of electric vehicle (EV) users. We design a certificateless aggregate signcryption (CLASC) algorithm to guarantee the security of uploading the charging and discharging privacy data. The algorithm solves certificate management and key escrow issues, utilizes aggregate signature operations to save network bandwidth, and avoids complex computations like bilinear pairings and exponents. Additionally, the scheme delegates the aggregate verification process to the fog layer, thereby alleviating the computational burden on the cloud layer, decreasing transmission delays, and enhancing the efficiency and reliability of the V2G network. The analysis results indicate that the scheme not only meets the required security objectives, but also has lower computational and communication overheads, making it suitable for scenarios involving the charging and discharging of large-scale EVs in V2G networks. Full article
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15 pages, 9317 KiB  
Article
Impact of Zinc Oxide on the Structure and Surface Properties of Magnesium–Potassium Glass–Crystalline Glazes
by Katarzyna Pasiut, Janusz Partyka, Dawid Kozień and Piotr Pańtak
Crystals 2024, 14(5), 456; https://doi.org/10.3390/cryst14050456 (registering DOI) - 11 May 2024
Abstract
The present work describes test results for glass crystal materials based on the SiO2-Al2O3-MgO-K2O system after 5, 10, 15, and 20 wt.% zinc oxide was added. The glazing analysis involved determining the effect of the [...] Read more.
The present work describes test results for glass crystal materials based on the SiO2-Al2O3-MgO-K2O system after 5, 10, 15, and 20 wt.% zinc oxide was added. The glazing analysis involved determining the effect of the additive on the characteristic temperatures and properties of the surface obtained, such as color, gloss, and roughness, as expressed by a Ra parameter. The obtained glazes were also analyzed for changes in phase composition (quantitative and qualitative XRD tests), changes in microstructure (based on images obtained with a scanning electron microscope), and structure (based on analyses and decomposition of spectra obtained using mid-infrared spectroscopy). As a result, the maximum addition of zinc oxide provided the best results. Full article
(This article belongs to the Special Issue Porous Ceramics and Their Composite Materials)
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35 pages, 3308 KiB  
Article
Application of Model-Free and Model-Based Kinetic Methods in Evaluation of Reactions Complexity during Thermo-Oxidative Degradation Process: Case Study of [4-(Hydroxymethyl)phenoxymethyl] Polystyrene Resin
by Bojan Janković, Vladimir Dodevski, Filip Veljković, Marija Janković and Nebojša Manić
Fire 2024, 7(5), 165; https://doi.org/10.3390/fire7050165 (registering DOI) - 11 May 2024
Abstract
This work examined the possibilities and limitations of model-free and model-based methods related to decrypting the kinetic complexity of multi-step thermo-oxidative degradation processes (as a testing system, a [4-(hydroxymethyl)phenoxymethyl] polystyrene resin was used), monitored by thermal analysis (TGA-DTG-DTA) techniques. It was found that [...] Read more.
This work examined the possibilities and limitations of model-free and model-based methods related to decrypting the kinetic complexity of multi-step thermo-oxidative degradation processes (as a testing system, a [4-(hydroxymethyl)phenoxymethyl] polystyrene resin was used), monitored by thermal analysis (TGA-DTG-DTA) techniques. It was found that isoconversional methods could successfully determine the correct number of process stages and presence of multiple reactions based on derived Ea(α) profiles and identify the negative dependence of the rate constant on the temperature. These methods could not overcome the problem that arose due to mass transfer limitations. The model-based method overcame more successfully the problem associated with mass transfer because its calculation machinery had capabilities for the correct solution of the total mass balance equation. However, a perfect fit with the experimental data was not achieved due to the dependence on the thermal history of the contribution (ctb.) of a given reaction step inside a fitting procedure cycle. On the other hand, through this approach, it was possible to estimate the rate-controlling steps of the process regarding the influence of the heating rate. It was found that for consecutive reaction mechanisms, the production of benzaldehyde and gases in high yields was controlled by the heating rate, where low heating rates were strongly recommended (≤10 K/min). Also, it was shown that the transport phenomenon may be also the rate-determining step (within the set of “intrinsic” kinetic parameters). It was also established that external heat transfer controls the overall rate, where the “pure” kinetic control regime had not been reached but was approached when lowering the temperature and size of the resin particles. Full article
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12 pages, 3175 KiB  
Article
Impact of Fruit Load on the Replenishment Dynamics of Internal Water Reserves in Olive Trees
by Efthymios Kokkotos, Anastasios Zotos, Vassilios Triantafyllidis and Angelos Patakas
Agronomy 2024, 14(5), 1026; https://doi.org/10.3390/agronomy14051026 (registering DOI) - 11 May 2024
Abstract
Stem refilling has been studied in many forest species, but its impact on olive trees remains underexplored. This study aims to examine the effect of varying fruit loads on stem refilling rates in olive trees. The experiment was conducted in a commercial olive [...] Read more.
Stem refilling has been studied in many forest species, but its impact on olive trees remains underexplored. This study aims to examine the effect of varying fruit loads on stem refilling rates in olive trees. The experiment was conducted in a commercial olive orchard over two years, characterized by a biennial bearing cycle with minimal fruit production in 2021 (“OFF” year) and maximal fruit production in 2022 (“ON” year). Sap flow sensors measured the water volume differences traversing the apex and base of main branches in two experimental trees. Tree water status was monitored using psychrometers, and soil moisture content was continuously recorded. Results suggest that alternate bearing significantly affects the stem refilling process, while soil moisture availability also plays a pivotal role. During the “ON” year, water reserve consumption increased to 63.6% compared to the “OFF” year to meet the water requirements of developing fruits. Replenishment occurred at various times throughout the 24 h period, including early morning, afternoon, and night when stomatal conductance measurements indicated stomatal closure. During the “ON” year, olive trees experienced intense nocturnal replenishment of reserves, regardless of soil moisture, water vapor pressure deficit, or fruit development stage. These findings offer novel insights into olive trees’ rehydration dynamics that can be used to optimize irrigation scheduling and improve water use efficiency. Full article
(This article belongs to the Special Issue Plant–Water Relationships for Sustainable Agriculture)
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17 pages, 3455 KiB  
Article
Water Use Efficiency in a Deficit-Irrigated Orange Orchard
by Fiorella Stagno, Massimo Brambilla, Giancarlo Roccuzzo and Alberto Assirelli
Horticulturae 2024, 10(5), 498; https://doi.org/10.3390/horticulturae10050498 (registering DOI) - 11 May 2024
Abstract
Citrus is a subtropical fruit tree with high water requirements. This study aimed to determine the effects of water deficit on an orange orchard subjected to different water-saving strategies. The study was realised in an orange orchard in a semiarid area by adopting [...] Read more.
Citrus is a subtropical fruit tree with high water requirements. This study aimed to determine the effects of water deficit on an orange orchard subjected to different water-saving strategies. The study was realised in an orange orchard in a semiarid area by adopting four different water management techniques: 100% crop evapotranspiration (control); SSDI—subsurface sustained deficit irrigation; RDI—regulated deficit irrigation; PRD—partial rootzone drying treatment during five growing seasons. The experimental design foresaw a randomised block design with six replicates per treatment (24 index plants). The results of the study showed that the water-saving strategies reduced irrigation water consumption by 25% (SSDI), 33% (RDI), and 49% (PRD) compared to the fully irrigated treatment without yield reduction, thus increasing water use efficiency. Mineral nutrition of the trees was slightly affected by irrigation treatments; element concentration in leaves was generally in the optimal range; only potassium showed values below the recommended leaf concentrations. Regarding fruit quality parameters, the vitamin C concentration in RDI showed significant differences with a value of 62.7 mg 100 mL−1 compared to 58.5 mg 100 mL−1 in the control. Plants subjected to SSDI and PRD strategies showed increased levels of pulp colour index with significant values of 10 and 9.90, respectively, compared to the control (8.44). By implementing targeted water management, citrus growers could save water and increase the ascorbic acid and sugar concentration in the fruits; anthocyanins also increased but not significantly. These findings open new market opportunities for citrus growers in marginal areas, where they cannot rely solely on producing citrus fruits to remain competitive. Full article
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17 pages, 3753 KiB  
Article
Enhanced Nitrate Nitrogen Removal from Constructed Wetland via Fe3O4/Granular Activated Carbon Anode Microbial Electrolysis Cell under Low C/N Ratio
by Heng Yang, Shenyu Tan, Yu Huang and Xinhua Tang
Water 2024, 16(10), 1377; https://doi.org/10.3390/w16101377 (registering DOI) - 11 May 2024
Abstract
In this study, a constructed wetland–Fe3O4/granular activated carbon anode microbial electrolysis cell (CW-FMEC) was constructed to enhance denitrification in low COD/N ratio wastewater. The introduction of Fe3O4 boosted the expression of functional genes involved in the [...] Read more.
In this study, a constructed wetland–Fe3O4/granular activated carbon anode microbial electrolysis cell (CW-FMEC) was constructed to enhance denitrification in low COD/N ratio wastewater. The introduction of Fe3O4 boosted the expression of functional genes involved in the denitrification pathway, and the abundance of narG, nirS, and nosZ increased by 99.29%, 70.54%, and 132.18%, respectively, compared to CW. In addition, the content of c-type cytochromes (c-Cyts) and EPS were also enhanced in the CW-FMEC. The microbial communities study displayed that Thauera, Dechloromonas, and Arenimonas became the main genera for denitrification. The denitrification performance at different COD/N ratios was investigated in depth. Under optimal working circumstances, the CW-FMEC had an excellent nitrate removal rate (88.9% ± 1.12%) while accumulating nearly no NO2-N or NH4+-N in the effluent. This study provides a new direction for the development of CW-MEC and accelerates its implementation. Full article
(This article belongs to the Special Issue Application of Electrochemical Treatment in Water Purification)
15 pages, 6073 KiB  
Article
Genome-Wide Epistatic Network Analyses of Semantic Fluency in Older Adults
by Qihua Tan, Weilong Li, Marianne Nygaard, Ping An, Mary Feitosa, Mary K. Wojczynski, Joseph Zmuda, Konstantin Arbeev, Svetlana Ukraintseva, Anatoliy Yashin, Kaare Christensen and Jonas Mengel-From
Int. J. Mol. Sci. 2024, 25(10), 5257; https://doi.org/10.3390/ijms25105257 (registering DOI) - 11 May 2024
Abstract
Semantic fluency impairment has been attributed to a wide range of neurocognitive and psychiatric conditions, especially in the older population. Moderate heritability estimates on semantic fluency were obtained from both twin and family-based studies suggesting genetic contributions to the observed variation across individuals. [...] Read more.
Semantic fluency impairment has been attributed to a wide range of neurocognitive and psychiatric conditions, especially in the older population. Moderate heritability estimates on semantic fluency were obtained from both twin and family-based studies suggesting genetic contributions to the observed variation across individuals. Currently, effort in identifying the genetic variants underlying the heritability estimates for this complex trait remains scarce. Using the semantic fluency scale and genome-wide SNP genotype data from the Long Life Family Study (LLFS), we performed a genome-wide association study (GWAS) and epistasis network analysis on semantic fluency in 2289 individuals aged over 60 years from the American LLFS cohorts and replicated the findings in 1129 individuals aged over 50 years from the Danish LLFS cohort. In the GWAS, two SNPs with genome-wide significance (rs3749683, p = 2.52 × 10−8; rs880179, p = 4.83 × 10−8) mapped to the CMYAS gene on chromosome 5 were detected. The epistasis network analysis identified five modules as significant (4.16 × 10−5 < p < 7.35 × 10−3), of which two were replicated (p < 3.10 × 10−3). These two modules revealed significant enrichment of tissue-specific gene expression in brain tissues and high enrichment of GWAS catalog traits, e.g., obesity-related traits, blood pressure, chronotype, sleep duration, and brain structure, that have been reported to associate with verbal performance in epidemiological studies. Our results suggest high tissue specificity of genetic regulation of gene expression in brain tissues with epistatic SNP networks functioning jointly in modifying individual verbal ability and cognitive performance. Full article
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13 pages, 1658 KiB  
Article
Impact of the Combination of Chemical and Organic Fertilization on the Growth and Yield of Pineapple under Two Shade Net Conditions
by Jonathan Martínez-Conde, Rogelio Enrique Palacios-Torres, Ana Rosa Ramírez-Seañez, Adolfo Amador-Mendoza, Maribel Reyes-Osornio, José Antonio Yam-Tzec, José Orbelin Gutiérrez-Hernández and Hipólito Hernández-Hernández
Agronomy 2024, 14(5), 1027; https://doi.org/10.3390/agronomy14051027 (registering DOI) - 11 May 2024
Abstract
The use of organic sources presents itself as a viable alternative to mitigate the excessive reliance on chemical fertilizers in agricultural practices. However, in the realm of pineapple cultivation, research exploring the synergy between chemical and organic fertilizers remains scarce. In this context, [...] Read more.
The use of organic sources presents itself as a viable alternative to mitigate the excessive reliance on chemical fertilizers in agricultural practices. However, in the realm of pineapple cultivation, research exploring the synergy between chemical and organic fertilizers remains scarce. In this context, the objective of this research was to evaluate the impact of the combination of chemical and organic fertilizers on the growth and yield of the MD-2 pineapple cultivar under two shade net conditions (installed 45 and 250 days after planting). The experiment was conducted in a split-plot design, with the main plot being the shade net conditions and the sub-plots the five fertilization treatments, which were applied 18 times via drip irrigation (control, 100% chemical fertilization, 50% reduced chemical fertilization, organic fertilization, and a combination of 50% chemical fertilization with organic fertilization). The results showed that the early installation of shade netting 45 days after planting decreases the growth and yield of pineapple; thus, the use of shade netting at this age is not recommended. Regarding fertilization, the combination of 50% chemical fertilization with organic fertilization showed similar growth and yield values compared to 100% conventional chemical fertilization under both shade net conditions. Furthermore, this combination presented similar nitrate and potassium values in the plant and did not negatively affect malic acid content. Therefore, the use of organic fertilizers in pineapple cultivation is a promising strategy to reduce the excessive use of chemical fertilizers, and it could also improve soil fertility. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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22 pages, 4656 KiB  
Article
Analysis of the Efficiency of Antioxidants in Inhibiting Lipid Oxidation in Terms of Characteristic Kinetic Parameters
by Sonia Losada-Barreiro, Fátima Paiva-Martins and Carlos Bravo-Díaz
Antioxidants 2024, 13(5), 593; https://doi.org/10.3390/antiox13050593 (registering DOI) - 11 May 2024
Abstract
In this work, we aim to find physical evidence demonstrating the crucial role that the effective concentration of antioxidants (AOs) present at the interfacial region of emulsions has in controlling the inhibition of the lipid oxidation reaction. We prepared a series of antioxidants [...] Read more.
In this work, we aim to find physical evidence demonstrating the crucial role that the effective concentration of antioxidants (AOs) present at the interfacial region of emulsions has in controlling the inhibition of the lipid oxidation reaction. We prepared a series of antioxidants of different hydrophobicities derived from chlorogenic and protocatechuic acids. We first monitored, in intact emulsions, the (sigmoidal) production of conjugated dienes and determined the corresponding induction times, tind. Independently, we determined the effective concentrations of the antioxidants in the same intact emulsions. Results show that both the length of the induction periods and the antioxidant interfacial concentrations parallel each other, with a maximum at the octyl-dodecyl derivatives. The ratio between the interfacial antioxidant concentrations and the induction periods remains constant for all AOs in the same series, so that the rates of initiation of lipid oxidation are the same regardless of the hydrophobicity of the antioxidant employed. The constancy in the rate of initiation provides strong experimental evidence for a direct relationship between interfacial concentrations and antioxidant efficiencies. Results suggest new possibilities to investigate lipid peroxidation under non-forced conditions and are of interest to formulators interested in preparing emulsions with antimicrobial properties. Full article
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22 pages, 7301 KiB  
Article
Simulating Future Exposure to Coastal Urban Flooding Using a Neural Network–Markov Model
by Ayyoub Frifra, Mohamed Maanan, Mehdi Maanan and Hassan Rhinane
J. Mar. Sci. Eng. 2024, 12(5), 800; https://doi.org/10.3390/jmse12050800 (registering DOI) - 11 May 2024
Abstract
Urbanization and climate change are two major challenges of the 21st century, and the effects of climate change, combined with the urbanization of coastal areas, increase the frequency of coastal flooding and the area exposed to it, resulting in increased risk of flooding [...] Read more.
Urbanization and climate change are two major challenges of the 21st century, and the effects of climate change, combined with the urbanization of coastal areas, increase the frequency of coastal flooding and the area exposed to it, resulting in increased risk of flooding and larger numbers of people and properties being vulnerable. An urban growth modeling system was used to simulate future growth scenarios along the coast of the Vendée region in western France, and the potential exposure to flooding with each scenario was evaluated. The model used was an Artificial Neural Network combined with a Markov Chain, using data obtained by the remote sensing and geographic information system techniques to predict three future urban growth scenarios: business as usual, environmental protection, and strategic urban planning. High-risk flood areas and future sea level projections from the Sixth Assessment Report of the Intergovernmental Panel on Climate Change were then used to assess future flood risk under each growth scenario in the study area. According to the results, the different growth scenarios are associated with different development patterns, and the strategic urban planning scenario significantly reduces the risk of flooding compared to the other two scenarios. However, the rise in sea level considerably expands the areas vulnerable to flooding. Finally, the methodology adopted can be used to prepare for the impact of climate change and develop strategies to mitigate the risk of flooding in the future. Full article
(This article belongs to the Section Coastal Engineering)
20 pages, 1407 KiB  
Article
Texture-Guided Graph Transform Optimization for Point Cloud Attribute Compression
by Yiting Shao, Fei Song, Wei Gao, Shan Liu and Ge Li
Appl. Sci. 2024, 14(10), 4094; https://doi.org/10.3390/app14104094 (registering DOI) - 11 May 2024
Abstract
There is a pressing need across various applications for efficiently compressing point clouds. While the Moving Picture Experts Group introduced the geometry-based point cloud compression (G-PCC) standard , its attribute compression scheme falls short of eliminating signal frequency-domain redundancy. This paper proposes a [...] Read more.
There is a pressing need across various applications for efficiently compressing point clouds. While the Moving Picture Experts Group introduced the geometry-based point cloud compression (G-PCC) standard , its attribute compression scheme falls short of eliminating signal frequency-domain redundancy. This paper proposes a texture-guided graph transform optimization scheme for point cloud attribute compression. We formulate the attribute transform coding task as a graph optimization problem, considering both the decorrelation capability of the graph transform and the sparsity of the optimized graph within a tailored joint optimization framework. First, the point cloud is reorganized and segmented into local clusters using a Hilbert-based scheme, enhancing spatial correlation preservation. Second, the inter-cluster attribute prediction and intra-cluster prediction are conducted on local clusters to remove spatial redundancy and extract texture priors. Third, the underlying graph structure in each cluster is constructed in a joint rate–distortion–sparsity optimization process, guided by geometry structure and texture priors to achieve optimal coding performance. Finally, point cloud attributes are efficiently compressed with the optimized graph transform. Experimental results show the proposed scheme outperforms the state of the art with significant BD-BR gains, surpassing G-PCC by 31.02%, 30.71%, and 32.14% in BD-BR gains for Y, U, and V components, respectively. Subjective evaluation of the attribute reconstruction quality further validates the superiority of our scheme. Full article
3 pages, 142 KiB  
Editorial
Editorial for the Special Issue on Advanced Interconnect and Packaging, 2nd Edition
by Dawei Wang and Wensheng Zhao
Micromachines 2024, 15(5), 643; https://doi.org/10.3390/mi15050643 (registering DOI) - 11 May 2024
Abstract
Interconnect and packaging technologies are crucial aspects of modern electronics, and they are essential to achieve high performance, miniaturization and low power consumption of electronic equipment [...] Full article
(This article belongs to the Special Issue Advanced Interconnect and Packaging, 2nd Edition)
23 pages, 37609 KiB  
Article
Efficacy and Safety of Asparagusic Acid against Echinococcus multilocularis In Vitro and in a Murine Infection Model
by Zhuanhong Lu, Yating Wang, Chuanchuan Liu and Haining Fan
Trop. Med. Infect. Dis. 2024, 9(5), 110; https://doi.org/10.3390/tropicalmed9050110 (registering DOI) - 11 May 2024
Abstract
Alveolar echinococcosis (AE) stands as a perilous zoonotic affliction caused by the larvae of Echinococcus multilocularis. There is an imperative need to explore novel therapeutic agents or lead compounds for the treatment of AE. Asparagusic acid, characterized by its low toxicity and [...] Read more.
Alveolar echinococcosis (AE) stands as a perilous zoonotic affliction caused by the larvae of Echinococcus multilocularis. There is an imperative need to explore novel therapeutic agents or lead compounds for the treatment of AE. Asparagusic acid, characterized by its low toxicity and possessing antimicrobial, antioxidant, and anti-parasitic attributes, emerges as a promising candidate. The aim of this study was to investigate the in vivo and in vitro efficacy of asparagusic acid against E. multilocularis. Morphological observations, scanning electron microscopy, ROS assays, mitochondrial membrane potential assays, and Western blot were used to evaluate the in vitro effects of asparagusic acid on protoscoleces. The effects of asparagusic acid on vesicles were assessed via PGI release, γ-GGT release, and transmission electron microscopy observations. CellTiter-Glo assays, Caspase3 activity assays, flow cytometry, and Western blot were used for an evaluation of the effect of asparaginic acid on the proliferation and apoptosis of germinal cells. The in vivo efficacy of asparagusic acid was evaluated in a murine AE model. Asparagusic acid exhibited a pronounced killing effect on the protoscoleces post-treatment. Following an intervention with asparagusic acid, there was an increase in ROS levels and a decline in mitochondrial membrane potential in the protoscolex. Moreover, asparagusic acid treatment resulted in the upregulation of PGI and γ-GGT release in metacestode vesicles, concomitant with the inhibition of germinal cell viability. Furthermore, asparagusic acid led to an enhanced relative expression of Caspase3 in the culture supernatant of both the protoscoleces and germinal cells, accompanied by an increase in the proportion of apoptotic germinal cells. Notably, asparagusic acid induced an augmentation in Bax and Caspase3 protein expression while reducing Bcl2 protein expression in both the protoscoleces and germinal cells. In vitro cytotoxicity assessments demonstrated the low toxicity of asparagusic acid towards normal human hepatocytes and HFF cells. Additionally, in vivo experiments revealed that asparagusic acid administration at doses of 10 mg/kg and 40 mg/kg significantly reduced metacestode wet weight. A histopathological analysis displayed the disruption of the germinal layer structure within lesions post-asparagusic acid treatment, alongside the preservation of laminated layer structures. Transmission electron microscopy further revealed mitochondrial swelling and heightened cell necrosis subsequent to the asparagusic acid treatment. Furthermore, asparagusic acid promoted Caspase3 and Bax protein expression while decreasing Bcl2 protein expression in perilesional tissues. Subsequently, it inhibited the expression of Ki67, MMP2, and MMP9 proteins in the perilesional tissues and curbed the activation of the PI3K/Akt signaling pathway within the lesion-host microenvironmental tissues. Asparagusic acid demonstrated a pronounced killing effect on E. multilocularis, suggesting its potential as a promising therapeutic agent for the management of AE. Full article
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11 pages, 1730 KiB  
Article
Recognition of 8-Oxo-2′-deoxyguanosine in DNA Using the Triphosphate of 2′-Deoxycytidine Connecting the 1,3-Diazaphenoxazine Unit, dCdapTP
by Takato Sakurada, Yuta Chikada, Ryo Miyahara and Yosuke Taniguchi
Molecules 2024, 29(10), 2270; https://doi.org/10.3390/molecules29102270 (registering DOI) - 11 May 2024
Abstract
DNA is constantly damaged by various external and internal factors. In particular, oxidative damage occurs in a steady state, and 8-oxo-2′-deoxyguanosine (oxodG) is known as the main oxidative damage. OxodG is a strong genotoxic nucleoside and is thought to be involved in the [...] Read more.
DNA is constantly damaged by various external and internal factors. In particular, oxidative damage occurs in a steady state, and 8-oxo-2′-deoxyguanosine (oxodG) is known as the main oxidative damage. OxodG is a strong genotoxic nucleoside and is thought to be involved in the pathogenesis of cancer and neurological diseases. However, a breakthrough method to detect the position of oxodG in DNA has not yet been developed. Therefore, we attempted to develop a novel method to detect oxodG in DNA using artificial nucleosides. Recently, we have succeeded in the recognition of oxodG in DNA by a single nucleotide elongation reaction using nucleoside derivatives based on a purine skeleton with a 1,3-diazaphenoxazine unit. In this study, we developed a new nucleoside derivative with a pyrimidine skeleton in order to further improve the recognition ability and enzymatic reaction efficiency. We, therefore, designed and synthesized 2′-deoxycytidine-1,3-diazaphenoxazine (Cdap) and its triphosphate derivatives. The results showed that it was incorporated into the primer strand relative to the dG template because of its cytidine skeleton, but it was more effective at the complementary position of the oxodG template. These results indicate that the new nucleoside derivative can be considered as one of the new candidates for the detection of oxodG in DNA. Full article
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22 pages, 6920 KiB  
Review
Common Methods for Phylogenetic Tree Construction and Their Implementation in R
by Yue Zou, Zixuan Zhang, Yujie Zeng, Hanyue Hu, Youjin Hao, Sheng Huang and Bo Li
Bioengineering 2024, 11(5), 480; https://doi.org/10.3390/bioengineering11050480 (registering DOI) - 11 May 2024
Abstract
A phylogenetic tree can reflect the evolutionary relationships between species or gene families, and they play a critical role in modern biological research. In this review, we summarize common methods for constructing phylogenetic trees, including distance methods, maximum parsimony, maximum likelihood, Bayesian inference, [...] Read more.
A phylogenetic tree can reflect the evolutionary relationships between species or gene families, and they play a critical role in modern biological research. In this review, we summarize common methods for constructing phylogenetic trees, including distance methods, maximum parsimony, maximum likelihood, Bayesian inference, and tree-integration methods (supermatrix and supertree). Here we discuss the advantages, shortcomings, and applications of each method and offer relevant codes to construct phylogenetic trees from molecular data using packages and algorithms in R. This review aims to provide comprehensive guidance and reference for researchers seeking to construct phylogenetic trees while also promoting further development and innovation in this field. By offering a clear and concise overview of the different methods available, we hope to enable researchers to select the most appropriate approach for their specific research questions and datasets. Full article
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13 pages, 1439 KiB  
Article
Intercostal Catheters Reduce Long-Term Pain and Postoperative Opioid Consumption after VATS
by Marie-Christin Neuschmid, Florian Ponholzer, Caecilia Ng, Herbert Maier, Hannes Dejaco, Paolo Lucciarini, Stefan Schneeberger and Florian Augustin
J. Clin. Med. 2024, 13(10), 2842; https://doi.org/10.3390/jcm13102842 (registering DOI) - 11 May 2024
Abstract
Background/Objectives: Pain after video-assisted thoracoscopic surgery (VATS) leads to impaired postoperative recovery, possible side effects of opioid usage, and higher rates of chronic post-surgery pain (CPSP). Nevertheless, guidelines on perioperative pain management for VATS patients are lacking. The aim of this study [...] Read more.
Background/Objectives: Pain after video-assisted thoracoscopic surgery (VATS) leads to impaired postoperative recovery, possible side effects of opioid usage, and higher rates of chronic post-surgery pain (CPSP). Nevertheless, guidelines on perioperative pain management for VATS patients are lacking. The aim of this study was to analyze the effectiveness of intercostal catheters in combination with a single shot intraoperative intercostal nerve block (SSINB) in comparison to SSINB alone with respect to opioid consumption and CPSP. Methods: Patients receiving an anatomic VATS resection between 2019 and 2022 for primary lung cancer were retrospectively analyzed. A total of 75 consecutive patients receiving an ICC and SSINB and 75 consecutive patients receiving only SSINB were included in our database. After enforcing the exclusion criteria (insufficient documentation, external follow-ups, or patients receiving opioids on a fixed schedule; n = 9) 141 patients remained for further analysis. Results: The ICC and No ICC cohort were comparable in age, gender distribution, tumor location and hospital stay. Patients in the ICC cohort showed significantly less opioid usage regarding the extent (4.48 ± 6.69 SD vs. 7.23 ± 7.55 SD mg, p = 0.023), duration (0.76 ± 0.97 SD vs. 1.26 ± 1.33 SD days, p = 0.012) and frequency (0.90 ± 1.34 SD vs. 1.45 ± 1.51 SD times, p = 0.023) in comparison to the No ICC group. During the first nine months of oncological follow-up assessments, no statistical difference was found in the rate of patients experiencing postoperative pain, although a trend towards less pain in the ICC cohort was found. One year after surgery, the ICC cohort expressed significantly less often pain (1.5 vs. 10.8%, p = 0.035). Conclusions: Placement of an ICC provides VATS patients with improved postoperative pain relief resulting in a reduced frequency of required opioid administration, less days with opioids, and a reduced total amount of opioids consumed. Furthermore, ICC patients have significantly lower rates of CPSP one year after surgery. Full article
(This article belongs to the Special Issue Review Special Issue Series: Recent Advances in Anesthesiology)
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