The 2023 MDPI Annual Report has
been released!
 
14 pages, 1646 KiB  
Review
Chronic HIV Transcription, Translation, and Persistent Inflammation
by Jonathan M. Kilroy, Andrew A. Leal and Andrew J. Henderson
Viruses 2024, 16(5), 751; https://doi.org/10.3390/v16050751 (registering DOI) - 9 May 2024
Abstract
People with HIV exhibit persistent inflammation that correlates with HIV-associated comorbidities including accelerated aging, increased risk of cardiovascular disease, and neuroinflammation. Mechanisms that perpetuate chronic inflammation in people with HIV undergoing antiretroviral treatments are poorly understood. One hypothesis is that the persistent low-level [...] Read more.
People with HIV exhibit persistent inflammation that correlates with HIV-associated comorbidities including accelerated aging, increased risk of cardiovascular disease, and neuroinflammation. Mechanisms that perpetuate chronic inflammation in people with HIV undergoing antiretroviral treatments are poorly understood. One hypothesis is that the persistent low-level expression of HIV proviruses, including RNAs generated from defective proviral genomes, drives the immune dysfunction that is responsible for chronic HIV pathogenesis. We explore factors during HIV infection that contribute to the generation of a pool of defective proviruses as well as how HIV-1 mRNA and proteins alter immune function in people living with HIV. Full article
(This article belongs to the Section Human Virology and Viral Diseases)
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19 pages, 3174 KiB  
Article
New Levan-Based Chiral Stationary Phases: Synthesis and Comparative HPLC Enantioseparation of (±)-trans-β-Lactam Ureas in the Polar Organic Mode
by Darko Kontrec, Mladenka Jurin, Andreja Jakas and Marin Roje
Molecules 2024, 29(10), 2213; https://doi.org/10.3390/molecules29102213 (registering DOI) - 9 May 2024
Abstract
In this paper, the preparation of three new polysaccharide-type chiral stationary phases (CSPs) based on levan carbamates (3,5-dimethylphenyl, 4-methylphenyl, and 1-naphthyl) is described. The enantioseparation of (±)-trans-β-lactam ureas 1ah was investigated by high-performance liquid chromatography (HPLC) on six different [...] Read more.
In this paper, the preparation of three new polysaccharide-type chiral stationary phases (CSPs) based on levan carbamates (3,5-dimethylphenyl, 4-methylphenyl, and 1-naphthyl) is described. The enantioseparation of (±)-trans-β-lactam ureas 1ah was investigated by high-performance liquid chromatography (HPLC) on six different chiral columns (Chiralpak AD-3, Chiralcel OD-3, Chirallica PST-7, Chirallica PST-8, Chirallica PST-9, and Chirallica PST-10) in the polar organic mode, using pure methanol (MeOH), ethanol (EtOH), and acetonitrile (ACN). Apart from the Chirallica PST-9 column (based on levan tris(1-naphthylcarbamate), the columns exhibited a satisfactory chiral recognition ability for the tested trans-β-lactam ureas 1ah. Full article
(This article belongs to the Special Issue Development and Application of Chiral Materials)
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19 pages, 601 KiB  
Article
The Digital Competences Necessary for the Successful Pedagogical Practice of Teachers in the Digital Age
by Gabriela Kiryakova and Daniela Kozhuharova
Educ. Sci. 2024, 14(5), 507; https://doi.org/10.3390/educsci14050507 (registering DOI) - 9 May 2024
Abstract
The digital transformation of society is a reality. Technology is becoming integral to people’s daily lives and children are growing up in the digital age. The education systems have to reflect and adapt to the new digital reality to effectively engage and prepare [...] Read more.
The digital transformation of society is a reality. Technology is becoming integral to people’s daily lives and children are growing up in the digital age. The education systems have to reflect and adapt to the new digital reality to effectively engage and prepare students for the future. Teachers have to possess digital competences at a high level, meaning that they are successfully able to use digital tools and technologies in their teaching practices. Digital competences include digital literacy, experience using educational software and platforms, and the ability to seamlessly integrate information and communication technologies (ICT) into the organization of educational activities. The current paper aims to study the opinion of teachers in Bulgarian schools regarding the possibilities of using digital technologies to achieve educational goals and the extent to which teachers integrate digital tools in their teaching activities. Teachers’ opinions about the need for specific digital competences are important. The results of the survey show that teachers in Bulgaria actively use digital technologies in their daily teaching activities (84.8%) in order to create and provide learning content to students and to provoke their active participation, and is a convenient tool for evaluating their students’ knowledge and skills and for providing effective feedback. The conducted research also identifies the necessary competences that teachers of the digital generation of learners need—skills and competences for developing authored electronic resources in various formats for students with different learning styles, as well as for working in online environments—individually and collaboratively with other teachers. Full article
(This article belongs to the Special Issue Technology as a Tool for Inclusive Education)
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22 pages, 1773 KiB  
Review
Mine Site Restoration: The Phytoremediation of Arsenic-Contaminated Soils
by Feizia Huslina, Leadin S. Khudur, Kalpit Shah, Aravind Surapaneni, Pacian Netherway and Andrew S. Ball
Environments 2024, 11(5), 99; https://doi.org/10.3390/environments11050099 (registering DOI) - 9 May 2024
Abstract
Arsenic (As) is considered one of the most toxic chemicals to both human and environmental health. Mining activities represent one of the main anthropogenic sources of As; the concentration of As in mine soil can reach 9300 mg kg−1. To overcome [...] Read more.
Arsenic (As) is considered one of the most toxic chemicals to both human and environmental health. Mining activities represent one of the main anthropogenic sources of As; the concentration of As in mine soil can reach 9300 mg kg−1. To overcome the major issue of soil As pollution, soil restoration is required. Biological restoration approaches are generally more cost-effective and environmentally sustainable than physical and chemical methods. In particular, phytoremediation, an environmentally friendly technique based on the use of plants to uptake contaminants from soil, has been successfully implemented to restore As-contaminated soils at mine sites. However, mine soils are generally depleted in essential plant nutrients, such as nitrogen (N). Recent research suggests that phytoremediation can be combined with other techniques (physical, chemical, and biological) to enhance the N content and plant biomass. The aim of this review is to assess the current state of knowledge in the field of the restoration of arsenic-impacted mine site soils, focusing on phytoremediation. We critically assess recent work examining the potential of the co-application of amendments with phytoremediation and identify promising technologies and key research gaps. More studies are required to test the effectiveness of using various soil additives to enhance the phytoremediation of As, not only in pot-scale experiments but also in the field, to enable an improved management strategy for mine site restoration in the future. Full article
(This article belongs to the Special Issue Environments: 10 Years of Science Together)
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15 pages, 4086 KiB  
Article
Arylamines QSAR-Based Design and Molecular Dynamics of New Phenylthiophene and Benzimidazole Derivatives with Affinity for the C111, Y268, and H73 Sites of SARS-CoV-2 PLpro Enzyme
by Gianfranco Sabadini, Marco Mellado, César Morales and Jaime Mella
Pharmaceuticals 2024, 17(5), 606; https://doi.org/10.3390/ph17050606 (registering DOI) - 9 May 2024
Abstract
A non-structural SARS-CoV-2 protein, PLpro, is involved in post-translational modifications in cells, allowing the evasion of antiviral immune response mechanisms. In this study, potential PLpro inhibitory drugs were designed using QSAR, molecular docking, and molecular dynamics. A combined QSAR equation with physicochemical and [...] Read more.
A non-structural SARS-CoV-2 protein, PLpro, is involved in post-translational modifications in cells, allowing the evasion of antiviral immune response mechanisms. In this study, potential PLpro inhibitory drugs were designed using QSAR, molecular docking, and molecular dynamics. A combined QSAR equation with physicochemical and Free-Wilson descriptors was formulated. The r2, q2, and r2test values were 0.833, 0.770, and 0.721, respectively. From the equation, it was found that the presence of an aromatic ring and a basic nitrogen atom is crucial for obtaining good antiviral activity. Then, a series of structures for the binding sites of C111, Y268, and H73 of PLpro were created. The best compounds were found to exhibit pIC50 values of 9.124 and docking scoring values of −14 kcal/mol. The stability of the compounds in the cavities was confirmed by molecular dynamics studies. A high number of stable contacts and good interactions over time were exhibited by the aryl-thiophenes Pred14 and Pred15, making them potential antiviral candidates. Full article
(This article belongs to the Section Medicinal Chemistry)
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22 pages, 17525 KiB  
Article
Genome-Wide Identification of Members of the Soybean CBL Gene Family and Characterization of the Functional Role of GmCBL1 in Responses to Saline and Alkaline Stress
by Feng Jiao, Dongdong Zhang, Yang Chen and Jinhua Wu
Plants 2024, 13(10), 1304; https://doi.org/10.3390/plants13101304 (registering DOI) - 9 May 2024
Abstract
Calcium ions function as key messengers in the context of intracellular signal transduction. The ability of plants to respond to biotic and abiotic stressors is highly dependent on the calcineurin B-like protein (CBL) and CBL-interacting protein kinase (CIPK) signaling network. Here, a comprehensive [...] Read more.
Calcium ions function as key messengers in the context of intracellular signal transduction. The ability of plants to respond to biotic and abiotic stressors is highly dependent on the calcineurin B-like protein (CBL) and CBL-interacting protein kinase (CIPK) signaling network. Here, a comprehensive effort was made to identify all members of the soybean CBL gene family, leading to the identification of 15 total genes distributed randomly across nine chromosomes, including 13 segmental duplicates. All the GmCBL gene subfamilies presented with similar gene structures and conserved motifs. Analyses of the expression of these genes in different tissues revealed that the majority of these GmCBLs were predominantly expressed in the roots. Significant GmCBL expression and activity increases were also observed in response to a range of stress-related treatments, including salt stress, alkaline stress, osmotic stress, or exposure to salicylic acid, brassinosteroids, or abscisic acid. Striking increases in GmCBL1 expression were observed in response to alkaline and salt stress. Subsequent analyses revealed that GmCBL1 was capable of enhancing soybean salt and alkali tolerance through the regulation of redox reactions. These results offer new insight into the complex mechanisms through which the soybean CBL gene family regulates the responses of these plants to environmental stressors, highlighting promising targets for efforts aimed at enhancing soybean stress tolerance. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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19 pages, 4503 KiB  
Article
Investigation of Automotive LiDAR Vision in Rain from Material and Optical Perspectives
by Wing Yi Pao, Joshua Howorth, Long Li, Martin Agelin-Chaab, Langis Roy, Julian Knutzen, Alexis Baltazar-y-Jimenez and Klaus Muenker
Sensors 2024, 24(10), 2997; https://doi.org/10.3390/s24102997 (registering DOI) - 9 May 2024
Abstract
With the emergence of autonomous functions in road vehicles, there has been increased use of Advanced Driver Assistance Systems comprising various sensors to perform automated tasks. Light Detection and Ranging (LiDAR) is one of the most important types of optical sensor, detecting the [...] Read more.
With the emergence of autonomous functions in road vehicles, there has been increased use of Advanced Driver Assistance Systems comprising various sensors to perform automated tasks. Light Detection and Ranging (LiDAR) is one of the most important types of optical sensor, detecting the positions of obstacles by representing them as clusters of points in three-dimensional space. LiDAR performance degrades significantly when a vehicle is driving in the rain as raindrops adhere to the outer surface of the sensor assembly. Performance degradation behaviors include missing points and reduced reflectivity of the points. It was found that the extent of degradation is highly dependent on the interface material properties. This subsequently affects the shapes of the adherent droplets, causing different perturbations to the optical rays. A fundamental investigation is performed on the protective polycarbonate cover of a LiDAR assembly coated with four classes of material—hydrophilic, almost-hydrophobic, hydrophobic, and superhydrophobic. Water droplets are controllably dispensed onto the cover to quantify the signal alteration due to the different droplets of various sizes and shapes. To further understand the effects of droplet motion on LiDAR signals, sliding droplet conditions are simulated using numerical analysis. The results are validated with physical optical tests, using a 905 nm laser source and receiver to mimic the LiDAR detection mechanism. Comprehensive explanations of LiDAR performance degradation in rain are presented from both material and optical perspectives. These can aid component selection and the development of signal-enhancing strategies for the integration of LiDARs into vehicle designs to minimize the impact of rain. Full article
(This article belongs to the Special Issue Intelligent Transportation Systems: Sensing, Automation and Control)
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12 pages, 3333 KiB  
Article
PlantMine: A Machine-Learning Framework to Detect Core SNPs in Rice Genomics
by Kai Tong, Xiaojing Chen, Shen Yan, Liangli Dai, Yuxue Liao, Zhaoling Li and Ting Wang
Genes 2024, 15(5), 603; https://doi.org/10.3390/genes15050603 (registering DOI) - 9 May 2024
Abstract
As a fundamental global staple crop, rice plays a pivotal role in human nutrition and agricultural production systems. However, its complex genetic architecture and extensive trait variability pose challenges for breeders and researchers in optimizing yield and quality. Particularly to expedite breeding methods [...] Read more.
As a fundamental global staple crop, rice plays a pivotal role in human nutrition and agricultural production systems. However, its complex genetic architecture and extensive trait variability pose challenges for breeders and researchers in optimizing yield and quality. Particularly to expedite breeding methods like genomic selection, isolating core SNPs related to target traits from genome-wide data reduces irrelevant mutation noise, enhancing computational precision and efficiency. Thus, exploring efficient computational approaches to mine core SNPs is of great importance. This study introduces PlantMine, an innovative computational framework that integrates feature selection and machine learning techniques to effectively identify core SNPs critical for the improvement of rice traits. Utilizing the dataset from the 3000 Rice Genomes Project, we applied different algorithms for analysis. The findings underscore the effectiveness of combining feature selection with machine learning in accurately identifying core SNPs, offering a promising avenue to expedite rice breeding efforts and improve crop productivity and resilience to stress. Full article
(This article belongs to the Special Issue Genomic Studies of Plant Breeding)
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13 pages, 678 KiB  
Article
CSN1S1, CSN3 and LPL: Three Validated Gene Polymorphisms Useful for More Sustainable Dairy Production in the Mediterranean River Buffalo
by Alfredo Pauciullo, Giustino Gaspa, Yi Zhang, Qingyou Liu and Gianfranco Cosenza
Animals 2024, 14(10), 1414; https://doi.org/10.3390/ani14101414 (registering DOI) - 9 May 2024
Abstract
The search for DNA polymorphisms useful for the genetic improvement of dairy farm animals has spanned more than 40 years, yielding relevant findings in cattle for milk traits, where the best combination of alleles for dairy processing has been found in casein genes [...] Read more.
The search for DNA polymorphisms useful for the genetic improvement of dairy farm animals has spanned more than 40 years, yielding relevant findings in cattle for milk traits, where the best combination of alleles for dairy processing has been found in casein genes and in DGAT1. Nowadays, similar results have not yet been reached in river buffaloes, despite the availability of advanced genomic technologies and accurate phenotype records. The aim of the present study was to investigate and validate the effect of four single nucleotide polymorphisms (SNP) in the CSN1S1, CSN3, SCD and LPL genes on seven milk traits in a larger buffalo population. These SNPs have previously been reported to be associated with, or affect, dairy traits in smaller populations often belonging to one farm. A total of 800 buffaloes were genotyped. The following traits were individually recorded, monthly, throughout each whole lactation period from 2010 to 2021: daily milk yield (dMY, kg), protein yield (dPY, kg) and fat yield (dFY, kg), fat and protein contents (dFP, % and dPP, %), somatic cell count (SCC, 103 cell/mL) and urea (mg/dL). A total of 15,742 individual milk test day records (2496 lactations) were available for 680 buffalo cows, with 3.6 ± 1.7 parities (from 1 to 13) and an average of 6.1 ± 1.2 test day records per lactation. Three out four SNPs in the CSN1S1, CSN3 and LPL genes were associated with at least one of analyzed traits. In particular, the CSN1S1 (AJ005430:c.578C>T) gave favorable associations with all yield traits (dMY, p = 0.022; dPY, p = 0.014; dFY, p = 0.029) and somatic cell score (SCS, p = 0.032). The CSN3 (HQ677596: c.536C>T) was positively associated with SCS (p = 0.005) and milk urea (p = 0.04). Favorable effects on daily milk yield (dMY, p = 0.028), fat (dFP, p = 0.027) and protein (dPP, p = 0.050) percentages were observed for the LPL. Conversely, the SCD did not show any association with milk traits. This is the first example of a confirmation study carried out in the Mediterranean river buffalo for genes of economic interest in the dairy field, and it represents a very important indication for the preselection of young bulls destined for breeding programs aimed at more sustainable dairy production. Full article
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11 pages, 1581 KiB  
Article
Exploring Consumer Preferences and Challenges in Hybrid Meat Products: A Conjoint Analysis of Hotdogs
by Kashmira Salgaonkar and Alissa A. Nolden
Foods 2024, 13(10), 1460; https://doi.org/10.3390/foods13101460 (registering DOI) - 9 May 2024
Abstract
Plant-based meat has been the primary strategy to reducing meat consumption. While this category has demonstrated success, with the market value estimated to reach USD 20 billion by 2023, the subsequent reduction in meat consumption has not been proportionate. An alternative approach is [...] Read more.
Plant-based meat has been the primary strategy to reducing meat consumption. While this category has demonstrated success, with the market value estimated to reach USD 20 billion by 2023, the subsequent reduction in meat consumption has not been proportionate. An alternative approach is hybrid products, which are thought to produce products that more closely resemble meat products. However, whether consumers will be willing to purchase hybrid products remains uncertain. Therefore, the present study uses a conjoint analysis approach to assess the product features driving the selection of a hybrid hotdog. This approach uncovers factors driving consumers’ purchase intentions for hybrid meat products when offered as a choice against 100% plant-based and 100% beef products. In an online survey, participants (n = 454; 45.6% female) were asked to select the product they would be most willing to purchase, varying in four characteristics: protein source, price, fat content, and price. Following this task, participants answered questions related to meat attachment, food neophobia, health, ecological, social, and moral motives regarding food consumption. The results revealed that protein source was the most important factor driving product selection, followed by price, fat, and packaging claims (35%, 24%, 21%, and 20% relative importance, respectively). In this study, hybrid hotdogs were the least preferred to beef and plant-based (−16, −2.5, and 18 part-worth utility, respectively). These product-specific attributes (protein, fat, and price) had distinct relationships with the choices of hybrid, plant-based, and hybrid hotdogs, with these factors together explaining slightly more variability in the selection of hybrid (9%) compared to plant-based (7%) and beef hotdogs (4%). For hybrid hotdogs, protein had the greatest influence (B = −1.2) followed by fat (B = −0.8) and price (B = −0.5). Interestingly, person-related parameters (health, meat attachment, ethics, and food neophobia) had no relationship with the selection of hybrid hotdogs, contrary to plant-based (7%) and beef hotdogs (5%). This influence of the different parameters on the selection of hybrid meat is thought to be due to the lack of consumer knowledge and familiarity with hybrid products. The current understanding of plant-based products may not correspond to hybrid products. Engaging with consumers during the development of these products is critical to ensure consumer acceptance and thus support the transition to a more sustainable diet. Full article
(This article belongs to the Special Issue Sensory Analysis of Plant-Based Products: Series II)
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14 pages, 2020 KiB  
Article
Enterobacteriaceae as a Key Indicator of Huanglongbing Infection in Diaphorina citri
by Xing-Zhi Duan, Guo-Sen Guo, Ling-Fei Zhou, Le Li, Ze-Min Liu, Cheng Chen, Bin-Hua Wang and Lan Wu
Int. J. Mol. Sci. 2024, 25(10), 5136; https://doi.org/10.3390/ijms25105136 (registering DOI) - 9 May 2024
Abstract
Extensive microbial interactions occur within insect hosts. However, the interactions between the Huanglongbing (HLB) pathogen and endosymbiotic bacteria within the Asian citrus psyllid (ACP, Diaphorina citri Kuwayama) in wild populations remain elusive. Thus, this study aimed to detect the infection rates of HLB [...] Read more.
Extensive microbial interactions occur within insect hosts. However, the interactions between the Huanglongbing (HLB) pathogen and endosymbiotic bacteria within the Asian citrus psyllid (ACP, Diaphorina citri Kuwayama) in wild populations remain elusive. Thus, this study aimed to detect the infection rates of HLB in the ACP across five localities in China, with a widespread prevalence in Ruijin (RJ, 58%), Huidong (HD, 28%), and Lingui (LG, 15%) populations. Next, microbial communities of RJ and LG populations collected from citrus were analyzed via 16S rRNA amplicon sequencing. The results revealed a markedly higher microbial diversity in the RJ population compared to the LG population. Moreover, the PCoA analysis identified significant differences in microbial communities between the two populations. Considering that the inter-population differences of Bray–Curtis dissimilarity in the RJ population exceeded those between populations, separate analyses were performed. Our findings indicated an increased abundance of Enterobacteriaceae in individuals infected with HLB in both populations. Random forest analysis also identified Enterobacteriaceae as a crucial indicator of HLB infection. Furthermore, the phylogenetic analysis suggested a potential regulatory role of ASV4017 in Enterobacteriaceae for ACP, suggesting its possible attractant activity. This research contributes to expanding the understanding of microbial communities associated with HLB infection, holding significant implications for HLB prevention and treatment. Full article
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16 pages, 4248 KiB  
Article
Molecular Composition of Humic Acids of Different Aged Fallow Lands and Soils of Different Types of Use in Northwest of Russia
by Vyacheslav Polyakov, Timur Nizamutdinov and Evgeny Abakumov
Agronomy 2024, 14(5), 996; https://doi.org/10.3390/agronomy14050996 (registering DOI) - 9 May 2024
Abstract
Post-agrogenic transformation of fallow soils leads to changes in soil carbon content, the molecular composition of humic substances, and rates of organic matter stabilization, which can affect climate change on the planet. In this regard, we analyzed the molecular composition of humic acids [...] Read more.
Post-agrogenic transformation of fallow soils leads to changes in soil carbon content, the molecular composition of humic substances, and rates of organic matter stabilization, which can affect climate change on the planet. In this regard, we analyzed the molecular composition of humic acids isolated from natural and fallow soils in the southern Taiga zone of northwest Russia. Different-aged soils on fallow lands represent a model of soil transformation in time, and data on the transformation of soil humic acid molecular composition make a significant contribution to the understanding of soil organic matter stabilization aspect issues. In this case, the molecular structure of humic acids isolated from natural and fallow soils in northwest Russia was analyzed. To study the molecular composition of HAs, the elemental composition was analyzed, and 13C (CP/MAS) NMR spectroscopy of HAs isolated from different aged abandoned soils and soils of different types of use was carried out. The obtained data showed that with the increasing age of soils in the fallow state, there is an increase in the carbon content of humic acids as well as a decrease in nitrogen content. As a result of the increasing age of soils in the fallow state, there are dynamics in the content of aromatic structural fragments in humic acids: 34% for 40 years old, 28% for 80 years old, and 31% for 120 years old. This is due to changes in the precursors of humification and the further transformation of plant residues in the soil. Re-involved fallow land soils lead to an increase in the content of aromatic structural fragments in the composition of HA in relation to HA extracted from mature soils. The lowest content of aromatic structural fragments was observed in the humic acids of 130-year-old agricultural soil, which is associated with the long-term application of organic fertilizers. Full article
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19 pages, 14002 KiB  
Article
An Assessment of the Role of the Timex Sampling Strategy on the Precision of Shoreline Detection Analysis
by Siegmund Nuyts, Eugene J. Farrell, Sheena Fennell and Stephen Nash
Coasts 2024, 4(2), 347-365; https://doi.org/10.3390/coasts4020018 (registering DOI) - 9 May 2024
Abstract
Remote video imagery using shoreline edge detection is widely used in coastal monitoring in order to acquire measurements of nearshore and swash features. Some of these systems are constrained by their long setup time, positioning requirements and considerable hardware costs. As such, there [...] Read more.
Remote video imagery using shoreline edge detection is widely used in coastal monitoring in order to acquire measurements of nearshore and swash features. Some of these systems are constrained by their long setup time, positioning requirements and considerable hardware costs. As such, there is a need for an autonomous low-cost system (~EUR 500), such as Timex cameras, that can be rapidly deployed in the field, while still producing the outcomes required for coastal monitoring. This research presents an assessment of the effect of the sampling strategy (time-lapse intervals) on the precision of shoreline detection for two low-cost cameras located in a remote coastal area in western Ireland, overlooking a dissipative beach–dune system. The analysis shows that RMSD in the detected shoreline is similar to other studies for sampling intervals ranging between 1 s and 30 s (i.e., RMSDmean for Camera 1 = 1.4 m and Camera 2 = 0.9 m), and an increase in the sampling interval from 1 s to 30 s had no significant adverse effect on the precision of shoreline detection. The research shows that depending on the intended use of the detected shorelines, the current standard of 1 s image sampling interval when using Timex cameras can be increased up to 30 s without any significant loss of accuracy. This positively impacts battery life and memory storage, making the systems more autonomous; for example, the battery life increased from ~10 days to ~100 days when the sampling interval was increased from 1 to 5 s. Full article
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21 pages, 3712 KiB  
Article
Towards Personally Relevant Navigation: The Differential Effects of Cognitive Style and Map Orientation on Spatial Knowledge Development
by Hannah Park, Manish K. Dixit and Fatemeh Pariafsai
Appl. Sci. 2024, 14(10), 4012; https://doi.org/10.3390/app14104012 (registering DOI) - 9 May 2024
Abstract
Under emergencies such as floods and fires or during indoor navigation where cues from local landmarks and a Global Positioning System (GPS) are no longer available, the acquisition of comprehensive environmental representation becomes particularly important. Several studies demonstrated that individual differences in cognitive [...] Read more.
Under emergencies such as floods and fires or during indoor navigation where cues from local landmarks and a Global Positioning System (GPS) are no longer available, the acquisition of comprehensive environmental representation becomes particularly important. Several studies demonstrated that individual differences in cognitive style might play an important role in creating a complete environmental representation and spatial navigation. However, this relationship between cognitive style and spatial navigation is not well researched. This study hypothesized that a specific type of map orientation (north-up vs. forward-up) might be more efficient for individuals with different cognitive styles. Forty participants were recruited to perform spatial tasks in a virtual maze environment to understand how cognitive style may relate to spatial navigation abilities, particularly the acquisition of survey and route knowledge. To measure survey knowledge, pointing direction tests and sketch map tests were employed, whereas, for route knowledge, the landmark sequencing test and route retracing test were employed. The results showed that both field-dependent and field-independent participants showed more accurate canonical organization in their sketch map task with a north-up map than with a forward-up map, with field-independent participants outperforming field-dependent participants in canonical organization scores. The map orientation did not influence the performance of Field-Independent participants on the pointing direct test, with field-dependent participants showing higher angular error with north-up maps. Regarding route knowledge, field-independent participants had more accurate responses in the landmark sequencing tests with a north-up map than with a forward-up map. On the other hand, field-dependent participants had higher accuracy in landmark sequencing tests in the forward-up map condition than in the north-up map condition. In the route retracing test, however, the map orientation had no statistically significant effect on different cognitive style groups. The results indicate that cognitive style may affect the relationship between map orientation and spatial knowledge acquisition. Full article
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18 pages, 918 KiB  
Article
Modelling the Combined Effect of Green Leadership and Human Resource Management in Moving to Green Supply Chain Performance Enhancement in Saudi Arabia
by Benameur Dahinine, Abderrazak Laghouag, Wassila Bensahel, Majed Alsolami and Tarek Guendouz
Sustainability 2024, 16(10), 3953; https://doi.org/10.3390/su16103953 (registering DOI) - 9 May 2024
Abstract
Previous research has been limited in examining the causal relationship between green transformational leadership (GTL) and green supply chain management (GSCM), with the intermediary influence of green human resource management (GHRM), within the pharmaceutical sector of the Kingdom of Saudi Arabia (KSA). This [...] Read more.
Previous research has been limited in examining the causal relationship between green transformational leadership (GTL) and green supply chain management (GSCM), with the intermediary influence of green human resource management (GHRM), within the pharmaceutical sector of the Kingdom of Saudi Arabia (KSA). This gap persisted despite the recognition in Saudi Vision 2030 of logistics, specifically, supply chain management (SCM), as fundamental to the national development agenda, given that contemporary competitiveness lies in the efficacy of supply chains (SCs) rather than individual companies. Moreover, the achievement of economic progress hinges significantly on how well these accomplishments align with sustainability demands and obstacles. This paper aims to investigate the extent to which GTL fosters GRHM practices to enhance the maturity of GSCM performance in the pharmaceutical industry in the KSA. In other words, the research goal is to explain the variance of GSCM due to GHRM and GTL. Drawing upon the Resource-Based View (RBV) and the Ability–Motivation–Opportunity theory (AMO), GTL can enhance many aspects of GHRM, such as employee performance measurement, training content design, recruitment criteria, and green-based rewards policies, which positively influence GSCM practices. The methodology employed is deductive and translated into a questionnaire derived from a comprehensive review of the existing literature. This questionnaire was subsequently tested through the collection of 111 responses from pharmaceutical companies operating in the KSA. The results show the critical effects of GTL and GHRM on GSCM in this sector. The research provides fresh theoretical perspectives and actionable recommendations based on the outcomes. As for originality, this research explores the contribution of transformational leadership and green human resource management in enhancing SC sustainability. The research provides directions for future research to investigate the mediating or moderating impacts of other significant factors, such as green thinking or eco-friendly behaviour, on SCM sustainability. As for practical implications, this research came up with an in-depth understanding of SC managers and professionals regarding their practices related to sustainability. Full article
(This article belongs to the Special Issue Supply Chain Performance Measurement in Industry 4.0)
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12 pages, 1118 KiB  
Review
Advancements in Neurosurgical Intraoperative Histology
by Ali A. Mohamed, Emma Sargent, Cooper Williams, Zev Karve, Karthik Nair and Brandon Lucke-Wold
Tomography 2024, 10(5), 693-704; https://doi.org/10.3390/tomography10050054 (registering DOI) - 9 May 2024
Abstract
Despite their relatively low incidence globally, central nervous system (CNS) tumors remain amongst the most lethal cancers, with only a few other malignancies surpassing them in 5-year mortality rates. Treatment decisions for brain tumors heavily rely on histopathological analysis, particularly intraoperatively, to guide [...] Read more.
Despite their relatively low incidence globally, central nervous system (CNS) tumors remain amongst the most lethal cancers, with only a few other malignancies surpassing them in 5-year mortality rates. Treatment decisions for brain tumors heavily rely on histopathological analysis, particularly intraoperatively, to guide surgical interventions and optimize patient outcomes. Frozen sectioning has emerged as a vital intraoperative technique, allowing for highly accurate, rapid analysis of tissue samples, although it poses challenges regarding interpretive errors and tissue distortion. Raman histology, based on Raman spectroscopy, has shown great promise in providing label-free, molecular information for accurate intraoperative diagnosis, aiding in tumor resection and the identification of neurodegenerative disease. Techniques including Stimulated Raman Scattering (SRS), Coherent Anti-Stokes Raman Scattering (CARS), Surface-Enhanced Raman Scattering (SERS), and Tip-Enhanced Raman Scattering (TERS) have profoundly enhanced the speed and resolution of Raman imaging. Similarly, Confocal Laser Endomicroscopy (CLE) allows for real-time imaging and the rapid intraoperative histologic evaluation of specimens. While CLE is primarily utilized in gastrointestinal procedures, its application in neurosurgery is promising, particularly in the context of gliomas and meningiomas. This review focuses on discussing the immense progress in intraoperative histology within neurosurgery and provides insight into the impact of these advancements on enhancing patient outcomes. Full article
(This article belongs to the Section Neuroimaging)
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18 pages, 51367 KiB  
Article
Drone-Acquired Short-Wave Infrared (SWIR) Imagery in Landscape Archaeology: An Experimental Approach
by Jesse Casana and Carolin Ferwerda
Remote Sens. 2024, 16(10), 1671; https://doi.org/10.3390/rs16101671 (registering DOI) - 9 May 2024
Abstract
Many rocks, minerals, and soil types reflect short-wave infrared (SWIR) imagery (900–2500 nm) in distinct ways, and geologists have long relied on this property to aid in the mapping of differing surface lithologies. Although surface archaeological features including artifacts, anthrosols, or structural remains [...] Read more.
Many rocks, minerals, and soil types reflect short-wave infrared (SWIR) imagery (900–2500 nm) in distinct ways, and geologists have long relied on this property to aid in the mapping of differing surface lithologies. Although surface archaeological features including artifacts, anthrosols, or structural remains also likely reflect SWIR wavelengths of light in unique ways, archaeological applications of SWIR imagery are rare, largely due to the low spatial resolution and high acquisition costs of these data. Fortunately, a new generation of compact, drone-deployable sensors now enables the collection of ultra-high-resolution (<10 cm), hyperspectral (>100 bands) SWIR imagery using a consumer-grade drone, while the analysis of these complex datasets is now facilitated by powerful imagery-processing software packages. This paper presents an experimental effort to develop a methodology that would allow archaeologists to collect SWIR imagery using a drone, locate surface artifacts in the resultant data, and identify different artifact types in the imagery based on their reflectance values across the 900–1700 nm spectrum. Our results illustrate both the potential of this novel approach to exploring the archaeological record, as we successfully locate and characterize many surface artifacts in our experimental study, while also highlighting challenges in successful data collection and analysis, largely related to current limitations in sensor and drone technology. These findings show that as underlying hardware sees continued improvements in the coming years, drone-acquired SWIR imagery can become a powerful tool for the discovery, documentation, and analysis of archaeological landscapes. Full article
(This article belongs to the Special Issue Applications of Remote Sensing in Landscape Archaeology)
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19 pages, 5278 KiB  
Article
A Foam Line Position Detection Algorithm for A/O Pool Based on YOLOv5
by Yubin Xu, Yihao Wu and Yinzhang Guo
Electronics 2024, 13(10), 1834; https://doi.org/10.3390/electronics13101834 (registering DOI) - 9 May 2024
Abstract
During the biochemical pretreatment process of leachate in urban landfill sites, if the foam in the A/O pool is not promptly addressed, it can lead to overflow, posing hazards to the surrounding environment and personnel. Therefore, a real-time foam line detection algorithm based [...] Read more.
During the biochemical pretreatment process of leachate in urban landfill sites, if the foam in the A/O pool is not promptly addressed, it can lead to overflow, posing hazards to the surrounding environment and personnel. Therefore, a real-time foam line detection algorithm based on YOLOv5x was proposed, which enhances feature information and improves anchor box regression prediction to accurately detect the position of foam lines. Firstly, in the preprocessing stage, employing a rectangular box to simultaneously label the foam line and the edge of the A/O pool within the same region, enhances the feature information of the foam line. Then, the C3NAM module was proposed, which applies weight sparse penalties to attention modules in the feature extraction section, to enhance the capability of extracting foam line features. Subsequently, a B-SPPCSPC module was proposed to enhance the fusion of shallow and deep feature information, addressing the issue of susceptibility to background interference during foam line detection. Next, the Focal_EIOU was introduced to ameliorate the issue of class imbalance in detection, providing more accurate bounding box predictions. Lastly, optimizing the detection layer scale improves the detection performance for smaller targets. The experimental results demonstrate that the accuracy of this algorithm reaches 98.9%, and the recall reaches 88.1%, with a detection frame rate of 26.2 frames per second, which can meet the actual detection requirements of real-world application scenarios. Full article
(This article belongs to the Special Issue Deep Learning-Based Object Detection/Classification)
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14 pages, 3119 KiB  
Article
Cloning, Characterization and Functional Analysis of Caspase 8-like Gene in Apoptosis of Crassostrea hongkongensis Response to Hyper-Salinity Stress
by Jinji Lin, Ziqi Yu, Yang Leng, Jiexiong Zhu, Feifei Yu, Yishan Lu, Jiayu Chen, Wenhao He, Yixin Zhang and Yaoshen Wen
Fishes 2024, 9(5), 172; https://doi.org/10.3390/fishes9050172 (registering DOI) - 9 May 2024
Abstract
Caspase-8, a member of the caspase family, is an initiating caspase and plays a crucial role in apoptosis. In this study, the full-length cDNA of caspase8-like (CASP8-like) was isolated from Crassostrea hongkongensis (C. hongkongensis) by RACE-PCR. ChCASP8-like contained [...] Read more.
Caspase-8, a member of the caspase family, is an initiating caspase and plays a crucial role in apoptosis. In this study, the full-length cDNA of caspase8-like (CASP8-like) was isolated from Crassostrea hongkongensis (C. hongkongensis) by RACE-PCR. ChCASP8-like contained a 1599-bp open reading frame (ORF) encoding 533 amino acids with two conserved death effector domains (DEDs) and a cysteine aspartase cysteine structural domain (CASc). Amino acid sequence comparison showed that ChCASP8-like shared the highest identity (85.4%) with CASP8-like of C. angulata. The tissue expression profile showed that ChCASP8-like was constitutively expressed in gills, hepatopancreas, mantle, adductor muscle, hemocytes and gonads, and was significantly upregulated in hemocytes, hepatopancreas and gills under hyper-salinity stress. The apoptosis-related genes, including ATR, CHK1, BCL-XL, CASP8-like, CASP9 and CASP3, were significantly activated by hyper-salinity stress, but were remarkably inhibited by ChCASP8-like silencing. The caspase 8 activity was increased by 1.7-fold after hyper-salinity stress, and was inhibited by 9.4% by ChCASP8-like silencing. Moreover, ChCASP8-like silencing clearly alleviated the apoptosis resulting from hyper-salinity stress. These results collectively demonstrated that ChCASP8-like played a crucial role in inducing apoptosis against hyper-salinity stress. Full article
(This article belongs to the Section Aquatic Invertebrates)
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14 pages, 11304 KiB  
Article
Storage Temperature Affects the Accumulation of Phenolics in Fresh-Cut Melon by Accelerating the Sucrose Decomposition
by Zhangfei Wu, Zhiguo Zhou, Yafang Liu, Zengyan Yang, Libin Wang, Yuanyuan Guo, Chunyan Xie and Zhifang Yu
Horticulturae 2024, 10(5), 488; https://doi.org/10.3390/horticulturae10050488 (registering DOI) - 9 May 2024
Abstract
To accurately evaluate the role of storage temperature in improving the quality of fresh-cut fruits and vegetables, the effects of two storage temperatures (5 °C and 15 °C) on the phenylpropanoid pathway and sucrose metabolism in fresh-cut melon (cv. Yugu) cubes were determined. [...] Read more.
To accurately evaluate the role of storage temperature in improving the quality of fresh-cut fruits and vegetables, the effects of two storage temperatures (5 °C and 15 °C) on the phenylpropanoid pathway and sucrose metabolism in fresh-cut melon (cv. Yugu) cubes were determined. A higher temperature (15 °C) expedited sucrose decomposition in the melon cubes at the early stage of storage, resulting in higher levels of glucose and fructose. This effect was corroborated by increased activities of acid invertase (AI), neutral invertase (NI), and sucrose synthase cleavage (SS-c), along with higher expressions of CmAI1/2, CmNI1/2, and CmSS1/2 in the melon cubes at 15 °C. Additionally, the higher activity and gene expression of hexokinase in melon cubes at 15 °C led to an increase in the utilization rate of sugars toward downstream metabolic pathways. Moreover, the melon cube storage at 15 °C elevated the activities and gene expressions of phenylalanine ammonia lyase (PAL), cinnamic acid 4-hydroxylase (C4H), and 4-coumaric acid: CoA ligase (4CL), thereby increasing the synthesis of phenolics. Sucrose showed a significant negative correlation with PAL, C4H, and 4CL, as well as with CmPAL5/7 and CmC4H1/3. However, hexokinase displayed a significant positive correlation with PAL, C4H, and 4CL, as well as with CmPAL1, CmPAL3-9, CmC4Hs, and Cm4CLs. These findings demonstrate that a higher-temperature storage of melon cubes can accelerate the phenylpropanoid pathway and sucrose metabolism by regulating the activity and gene expression of related enzymes, thereby inducing phenolic accumulation. These results also indicate that lower-temperature storage is not conducive to the conversion of sugars into phenolics in fresh-cut melon. Therefore, the temperature can be appropriately and briefly raised in the production and preservation process of fresh-cut melon to obtain higher levels of phenolics. Full article
(This article belongs to the Special Issue Postharvest Biology and Molecular Research of Horticulture Crops)
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13 pages, 3638 KiB  
Article
The Expression of Adipogenic Marker Is Significantly Increased in Estrogen-Treated Lipedema Adipocytes Differentiated from Adipose Stem Cells In Vitro
by Sara Al-Ghadban, Spencer U. Isern, Karen L. Herbst and Bruce A. Bunnell
Biomedicines 2024, 12(5), 1042; https://doi.org/10.3390/biomedicines12051042 (registering DOI) - 9 May 2024
Abstract
Lipedema is a chronic, idiopathic, and painful disease characterized by an excess of adipose tissue in the extremities. The goal of this study is to characterize the gene expression of estrogen receptors (ERα and ERβ), G protein-coupled estrogen receptor (GPER), and ER-metabolizing enzymes: [...] Read more.
Lipedema is a chronic, idiopathic, and painful disease characterized by an excess of adipose tissue in the extremities. The goal of this study is to characterize the gene expression of estrogen receptors (ERα and ERβ), G protein-coupled estrogen receptor (GPER), and ER-metabolizing enzymes: hydroxysteroid 17-beta dehydrogenase (HSD17B1, 7, B12), cytochrome P450 (CYP19A1), hormone-sensitive lipase (LIPE), enzyme steroid sulfatase (STS), and estrogen sulfotransferase (SULT1E1), which are markers in Body Mass Index (BMI) and age-matched non-lipedema (healthy) and lipedema ASCs and spheroids. Flow cytometry and cellular proliferation assays, RT-PCR, and Western Blot techniques were used to determine the expression of ERs and estrogen-metabolizing enzymes. In 2D monolayer culture, estrogen increased the proliferation and the expression of the mesenchymal marker, CD73, in hormone-depleted (HD) healthy ASCs compared to lipedema ASCs. The expression of ERβ was significantly increased in HD lipedema ASCs and spheroids compared to corresponding healthy cells. In contrast, ERα and GPER gene expression was significantly decreased in estrogen-treated lipedema spheroids. CYP19A1 and LIPE gene expressions were significantly increased in estrogen-treated healthy ASCs and spheroids, respectively, while estrogen upregulated the expression of PPAR-ϒ2 and ERα in estrogen-treated lipedema-differentiated adipocytes and spheroids. These results indicate that estrogen may play a role in adipose tissue dysregulation in lipedema. Full article
(This article belongs to the Section Gene and Cell Therapy)
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12 pages, 1491 KiB  
Article
Assessing the Impact of Various Decontamination Instruments on Titanium and Zirconia Dental Implants: An In Vitro Study
by Louisa Vierling, Chun Ching Liu, Daniel Wiedemeier, Andrea Gubler and Patrick R. Schmidlin
Dent. J. 2024, 12(5), 136; https://doi.org/10.3390/dj12050136 (registering DOI) - 9 May 2024
Abstract
This study investigates the impact of various instrumentation techniques on material removal and surface changes in titanium (Ti)- and zirconia (Zr) implant discs. Ti- and Zr discs were subjected to standardized experiments using various instruments including airflow, ultrasound, carbide, and diamond burs. Instrumentation [...] Read more.
This study investigates the impact of various instrumentation techniques on material removal and surface changes in titanium (Ti)- and zirconia (Zr) implant discs. Ti- and Zr discs were subjected to standardized experiments using various instruments including airflow, ultrasound, carbide, and diamond burs. Instrumentation was performed for 60 s with continuous automatic motion. Abrasion and changes in surface roughness were assessed using profilometry, while scanning electron microscopy was used to examine morphological changes and particle size. Carbide burs predominantly caused abrasion on Ti discs, while diamond burs caused more abrasion on Zr discs. The Ti discs were more susceptible to surface changes. However, among the materials tested, machined Zr discs treated with diamond burs produced the largest particle. In certain cases, a statistical significance (p < 0.05) was observed between the groups, while in others, there was no considerable difference among the means (p > 0.05). These results highlighted the statistical significance of our findings. These results found diverse alterations in surface characteristics of Ti- and Zr discs due to different instruments, with carbide and diamond burs causing notable effects. The findings highlight the need for a careful balance between promoting healing and minimizing harm during implantoplasty. Full article
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16 pages, 13655 KiB  
Article
The Synthesis of Ag/TiO2 via the DC Magnetron Sputtering Method and Its Application in the Photocatalytic Degradation of Methyl Orange in Na2SO4 Solution
by Li Sun, Zhuoqun Que, Ting Ruan, Zhigang Yuan, Wenbang Gong, Shunqi Mei, Zhen Chen and Ying Liu
Appl. Sci. 2024, 14(10), 4014; https://doi.org/10.3390/app14104014 (registering DOI) - 9 May 2024
Abstract
TiO2 and TiO2 films modified with Ag (Ag/TiO2) were prepared via the DC magnetron sputtering method and the degree of modification was controlled via the sputtering power and time of Ag. The microstructures and properties of these films were [...] Read more.
TiO2 and TiO2 films modified with Ag (Ag/TiO2) were prepared via the DC magnetron sputtering method and the degree of modification was controlled via the sputtering power and time of Ag. The microstructures and properties of these films were characterized using field emission scanning electron microscopy, X-ray diffractometry, ultraviolet–visible diffuse reflectance spectrometry, atomic force microscopy, and X-ray photoelectron spectroscopy (XPS). The results show that the prepared films have an anatase structure. Compared with pure TiO2, Ag deposition can improve the utilization of light. The three-dimensional images of Ag/TiO2 clearly show that with the increase in Ag sputtering power and sputtering time, Ag particles on the surface of the film gradually increase, and the structure of the film is relatively dense. The photocatalytic effect of Ag/TiO2 films is the best when the Ag sputtering power is 5 W and the sputtering time is 50 s. Under high-pressure mercury lamp irradiation, the photocatalytic degradation rate of methyl orange (MO) in pure MO solution with Ag/TiO2-5 W-50 s can reach 100% within 55 min, whereas that in MO-Na2SO4 mixed solution can reach 99.55% within 65 min. The results suggest that the presence of Na2SO4 in MO solution can inhibit the degradation of MO using Ag/TiO2, the result of XPS suggests that Na2SO4 accelerates the oxidation of Ag, which may lead to an increase in the recombination rate of photogenerated electron–hole pairs and a decrease in the degradation rate. During the process of recycling photocatalysts, the degradation rate of MO was apparently reduced. A possible reason is that the Ag particles have been oxidized and products of photocatalytic degradation are on the surface of the photocatalyst. The photocatalytic degradation mechanism was studied. Full article
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