The 2023 MDPI Annual Report has
been released!
 
13 pages, 1377 KiB  
Article
In Silico CRISPR-Cas-Mediated Base Editing Strategies for Early-Onset, Severe Cone–Rod Retinal Degeneration in Three Crumbs homolog 1 Patients, including the Novel Variant c.2833G>A
by Hoda Shamsnajafabadi, Maria Kaukonen, Julia-Sophia Bellingrath, Robert E. MacLaren and Jasmina Cehajic-Kapetanovic
Genes 2024, 15(5), 625; https://doi.org/10.3390/genes15050625 (registering DOI) - 15 May 2024
Abstract
Pathogenic variants in the Crumbs homolog 1 (CRB1) gene lead to severe, childhood-onset retinal degeneration leading to blindness in early adulthood. There are no approved therapies, and traditional adeno-associated viral vector-based gene therapy approaches are challenged by the existence of multiple CRB1 isoforms. [...] Read more.
Pathogenic variants in the Crumbs homolog 1 (CRB1) gene lead to severe, childhood-onset retinal degeneration leading to blindness in early adulthood. There are no approved therapies, and traditional adeno-associated viral vector-based gene therapy approaches are challenged by the existence of multiple CRB1 isoforms. Here, we describe three CRB1 variants, including a novel, previously unreported variant that led to retinal degeneration. We offer a CRISPR-Cas-mediated DNA base editing strategy as a potential future therapeutic approach. This study is a retrospective case series. Clinical and genetic assessments were performed, including deep phenotyping by retinal imaging. In silico analyses were used to predict the pathogenicity of the novel variant and to determine whether the variants are amenable to DNA base editing strategies. Case 1 was a 24-year-old male with cone–rod dystrophy and retinal thickening typical of CRB1 retinopathy. He had a relatively preserved central outer retinal structure and a best corrected visual acuity (BCVA) of 60 ETDRS letters in both eyes. Genetic testing revealed compound heterozygous variants in exon 9: c.2843G>A, p.(Cys948Tyr) and a novel variant, c.2833G>A, p.(Gly945Arg), which was predicted to likely be pathogenic by an in silico analysis. Cases 2 and 3 were two brothers, aged 20 and 24, who presented with severe cone–rod dystrophy and a significant disruption of the outer nuclear layers. The BCVA was reduced to hand movements in both eyes in Case 2 and to 42 ETDRS letters in both eyes in Case 3. Case 2 was also affected with marked cystoid macular lesions, which are common in CRB1 retinopathy, but responded well to treatment with oral acetazolamide. Genetic testing revealed two c.2234C>T, p.(Thr745Met) variants in both brothers. As G-to-A and C-to-T variants, all three variants are amenable to adenine base editors (ABEs) targeting the forward strand in the Case 1 variants and the reverse strand in Cases 2 and 3. Available PAM sites were detected for KKH-nSaCas9-ABE8e for the c.2843G>A variant, nSaCas9-ABE8e and KKH-nSaCas9-ABE8e for the c.2833G>A variant, and nSpCas9-ABE8e for the c.2234C>T variant. In this case series, we report three pathogenic CRB1 variants, including a novel c.2833G>A variant associated with early-onset cone–rod dystrophy. We highlight the severity and rapid progression of the disease and offer ABEs as a potential future therapeutic approach for this devastating blinding condition. Full article
(This article belongs to the Special Issue Study of Inherited Retinal Diseases—Volume II)
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18 pages, 3733 KiB  
Review
Historical Perspective and Current Trends in Anticancer Drug Development
by Katarzyna Gach-Janczak, Joanna Drogosz-Stachowicz, Anna Janecka, Karol Wtorek and Marek Mirowski
Cancers 2024, 16(10), 1878; https://doi.org/10.3390/cancers16101878 (registering DOI) - 15 May 2024
Abstract
Cancer is considered one of the leading causes of death in the 21st century. The intensive search for new anticancer drugs has been actively pursued by chemists and pharmacologists for decades, focusing either on the isolation of compounds with cytotoxic properties from plants [...] Read more.
Cancer is considered one of the leading causes of death in the 21st century. The intensive search for new anticancer drugs has been actively pursued by chemists and pharmacologists for decades, focusing either on the isolation of compounds with cytotoxic properties from plants or on screening thousands of synthetic molecules. Compounds that could potentially become candidates for new anticancer drugs must have the ability to inhibit proliferation and/or induce apoptosis in cancer cells without causing too much damage to normal cells. Some anticancer compounds were discovered by accident, others as a result of long-term research. In this review, we have presented a brief history of the development of the most important groups of anticancer drugs, pointing to the fact that they all have many side effects. Full article
(This article belongs to the Special Issue Feature Review for Cancer Therapy)
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25 pages, 7782 KiB  
Article
Deciphering the Genetic Links between Psychological Stress, Autophagy, and Dermatological Health: Insights from Bioinformatics, Single-Cell Analysis, and Machine Learning in Psoriasis and Anxiety Disorders
by Xiao-Ling Liu and Long-Sen Chang
Int. J. Mol. Sci. 2024, 25(10), 5387; https://doi.org/10.3390/ijms25105387 (registering DOI) - 15 May 2024
Abstract
The relationship between psychological stress, altered skin immunity, and autophagy-related genes (ATGs) is currently unclear. Psoriasis is a chronic skin inflammation of unclear etiology that is characterized by persistence and recurrence. Immune dysregulation and emotional disturbances are recognized as significant risk factors. Emerging [...] Read more.
The relationship between psychological stress, altered skin immunity, and autophagy-related genes (ATGs) is currently unclear. Psoriasis is a chronic skin inflammation of unclear etiology that is characterized by persistence and recurrence. Immune dysregulation and emotional disturbances are recognized as significant risk factors. Emerging clinical evidence suggests a possible connection between anxiety disorders, heightened immune system activation, and altered skin immunity, offering a fresh perspective on the initiation of psoriasis. The aim of this study was to explore the potential shared biological mechanisms underlying the comorbidity of psoriasis and anxiety disorders. Psoriasis and anxiety disorders data were obtained from the GEO database. A list of 3254 ATGs was obtained from the public database. Differentially expressed genes (DEGs) were obtained by taking the intersection of DEGs between psoriasis and anxiety disorder samples and the list of ATGs. Five machine learning algorithms used screening hub genes. The ROC curve was performed to evaluate diagnostic performance. Then, GSEA, immune infiltration analysis, and network analysis were carried out. The Seurat and Monocle algorithms were used to depict T-cell evolution. Cellchat was used to infer the signaling pathway between keratinocytes and immune cells. Four key hub genes were identified as diagnostic genes related to psoriasis autophagy. Enrichment analysis showed that these genes are indeed related to T cells, autophagy, and immune regulation, and have good diagnostic efficacy validated. Using single-cell RNA sequencing analysis, we expanded our understanding of key cellular participants, including inflammatory keratinocytes and their interactions with immune cells. We found that the CASP7 gene is involved in the T-cell development process, and correlated with γδ T cells, warranting further investigation. We found that anxiety disorders are related to increased autophagy regulation, immune dysregulation, and inflammatory response, and are reflected in the onset and exacerbation of skin inflammation. The hub gene is involved in the process of immune signaling and immune regulation. The CASP7 gene, which is related with the development and differentiation of T cells, deserves further study. Potential biomarkers between psoriasis and anxiety disorders were identified, which are expected to aid in the prediction of disease diagnosis and the development of personalized treatments. Full article
(This article belongs to the Section Molecular Informatics)
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12 pages, 2253 KiB  
Article
Sentinel Lymph Node Mapping in Lung Cancer: A Pilot Study for the Detection of Micrometastases in Stage I Non-Small Cell Lung Cancer
by Gaetano Romano, Carmelina Cristina Zirafa, Fabrizia Calabrò, Greta Alì, Gianpiero Manca, Annalisa De Liperi, Agnese Proietti, Beatrice Manfredini, Iosè Di Stefano, Andrea Marciano, Federico Davini, Duccio Volterrani and Franca Melfi
Tomography 2024, 10(5), 761-772; https://doi.org/10.3390/tomography10050058 (registering DOI) - 15 May 2024
Abstract
Lymphadenectomy represents a fundamental step in the staging and treatment of non-small cell lung cancer (NSCLC). To date, the extension of lymphadenectomy in early-stage NSCLC is a debated topic due to its possible complications. The detection of sentinel lymph nodes (SLNs) is a [...] Read more.
Lymphadenectomy represents a fundamental step in the staging and treatment of non-small cell lung cancer (NSCLC). To date, the extension of lymphadenectomy in early-stage NSCLC is a debated topic due to its possible complications. The detection of sentinel lymph nodes (SLNs) is a strategy that can improve the selection of patients in which a more extended lymphadenectomy is necessary. This pilot study aimed to refine lymph nodal staging in early-stage NSCLC patients who underwent robotic lung resection through the application of innovative intraoperative sentinel lymph node (SLN) identification and the pathological evaluation using one-step nucleic acid amplification (OSNA). Clinical N0 NSCLC patients planning to undergo robotic lung resection were selected. The day before surgery, all patients underwent radionuclide computed tomography (CT)-guided marking of the primary lung lesion and subsequently Single Photon Emission Computed Tomography (SPECT) to identify tracer migration and, consequently, the area with higher radioactivity. On the day of surgery, the lymph nodal radioactivity was detected intraoperatively using a gamma camera. SLN was defined as the lymph node with the highest numerical value of radioactivity. The OSNA amplification, detecting the mRNA of CK19, was used for the detection of nodal metastases in the lymph nodes, including SLN. From March to July 2021, a total of 8 patients (3 female; 5 male), with a mean age of 66 years (range 48–77), were enrolled in the study. No complications relating to the CT-guided marking or preoperative SPECT were found. An average of 5.3 lymph nodal stations were examined (range 2–8). N2 positivity was found in 3 out of 8 patients (37.5%). Consequently, pathological examination of lymph nodes with OSNA resulted in three upstages from the clinical IB stage to pathological IIIA stage. Moreover, in 1 patient (18%) with nodal upstaging, a positive node was intraoperatively identified as SLN. Comparing this protocol to the usual practice, no difference was found in terms of the operating time, conversion rate, and complication rate. Our preliminary experience suggests that sentinel lymph node detection, in association with the accurate pathological staging of cN0 patients achieved using OSNA, is safe and effective in the identification of metastasis, which is usually undetected by standard diagnostic methods. Full article
(This article belongs to the Section Cancer Imaging)
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19 pages, 6076 KiB  
Article
The Effect of the PhoP/PhoQ System on the Regulation of Multi-Stress Adaptation Induced by Acid Stress in Salmonella Typhimurium
by Xu Gao, Jina Han, Lixian Zhu, George-John E. Nychas, Yanwei Mao, Xiaoyin Yang, Yunge Liu, Xueqing Jiang, Yimin Zhang and Pengcheng Dong
Foods 2024, 13(10), 1533; https://doi.org/10.3390/foods13101533 (registering DOI) - 15 May 2024
Abstract
Acidic stress in beef cattle slaughtering abattoirs can induce the acid adaptation response of in-plant contaminated Salmonella. This may further lead to multiple resistance responses threatening public health. Therefore, the acid, heat, osmotic and antibiotic resistances of Salmonella typhimurium (ATCC14028) were evaluated after [...] Read more.
Acidic stress in beef cattle slaughtering abattoirs can induce the acid adaptation response of in-plant contaminated Salmonella. This may further lead to multiple resistance responses threatening public health. Therefore, the acid, heat, osmotic and antibiotic resistances of Salmonella typhimurium (ATCC14028) were evaluated after a 90 min adaption in a pH = 5.4 “mild acid” Luria–Bertani medium. Differences in such resistances were also determined between the ∆phoP mutant and wild-type Salmonella strains to confirm the contribution of the PhoP/PhoQ system. The transcriptomic differences between the acid-adapted and ∆phoP strain were compared to explore the role of the PhoP/Q two-component system in regulating multi-stress resistance. Acid adaptation was found to increase the viability of Salmonella to lethal acid, heat and hyperosmotic treatments. In particular, acid adaptation significantly increased the resistance of Salmonella typhimurium to Polymyxin B, and such resistance can last for 21 days when the adapted strain was stored in meat extract medium at 4 °C. Transcriptomics analysis revealed 178 up-regulated and 274 down-regulated genes in the ∆phoP strain. The Salmonella infection, cationic antimicrobial peptide (CAMP) resistance, quorum sensing and two-component system pathways were down-regulated, while the bacterial tricarboxylic acid cycle pathways were up-regulated. Transcriptomics and RT-qPCR analyses revealed that the deletion of the phoP gene resulted in the down-regulation of the expression of genes related to lipid A modification and efflux pumps. These changes in the gene expression result in the change in net negative charge and the mobility of the cell membrane, resulting in enhanced CAMP resistance. The confirmation of multiple stress resistance under acid adaptation and the transcriptomic study in the current study may provide valuable information for the control of multiple stress resistance and meat safety. Full article
(This article belongs to the Special Issue Foodborne Pathogenic Bacteria: Prevalence and Control—Volume II)
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2 pages, 156 KiB  
Editorial
Recent Approaches to Wound Treatment—Second Edition
by Cinzia Pagano, César Antonio Viseras Iborra and Luana Perioli
Int. J. Mol. Sci. 2024, 25(10), 5388; https://doi.org/10.3390/ijms25105388 (registering DOI) - 15 May 2024
Abstract
Wound healing is a complex process involving a number of mechanisms [...] Full article
(This article belongs to the Special Issue Recent Approaches for Wound Treatment—2nd Edition)
20 pages, 739 KiB  
Review
Research Progress in the Separation of Chemical Components from Essential Oils by High-Speed Countercurrent Chromatography
by Linhong He, Zihao Zhong, Lijuan Zhang and Xi Bai
Separations 2024, 11(5), 152; https://doi.org/10.3390/separations11050152 (registering DOI) - 15 May 2024
Abstract
Essential oils (EOs) are vital secondary metabolites in plants. They have garnered substantial attention owing to their distinct flavors and desirable attributes, including potent antioxidant, antibacterial, and antitumor properties. Nevertheless, the active constituents of EOs exhibit intricate chemical structures, and conventional separation techniques [...] Read more.
Essential oils (EOs) are vital secondary metabolites in plants. They have garnered substantial attention owing to their distinct flavors and desirable attributes, including potent antioxidant, antibacterial, and antitumor properties. Nevertheless, the active constituents of EOs exhibit intricate chemical structures, and conventional separation techniques are inadequate for purifying the individual chemical components from EOs. High-speed countercurrent chromatography, based on the principles of a hydrodynamic equilibrium system, has emerged as a liquid–liquid chromatographic separation method renowned for its ability to handle substantial single injection volumes and the absence of irreversible adsorption. Consequently, in recent years, this technique has been widely employed in the isolation and refinement of natural products. In this review, a comprehensive analysis is conducted, contrasting the merits and demerits of high-speed countercurrent chromatography with conventional separation methods. The solvent systems, elution modes, commonly employed detectors, and practical applications are reviewed in the context of high-speed countercurrent chromatography for essential oil separation and purification. Furthermore, this review offers a glimpse into the potential prospects of applying this technique, with the intention of serving as a valuable reference for the use of high-speed countercurrent chromatography in the purification of EOs. Full article
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14 pages, 2740 KiB  
Article
Raman Spectroscopy of Disperse Systems with Varying Particle Sizes and Correction of Signal Losses
by Erik Spoor, Viktoria Oerke, Matthias Rädle and Jens-Uwe Repke
Sensors 2024, 24(10), 3132; https://doi.org/10.3390/s24103132 (registering DOI) - 15 May 2024
Abstract
In this paper, a dispersion of glass beads of different sizes in an ammonium nitrate solution is investigated with the aid of Raman spectroscopy. The signal losses caused by the dispersion are quantified by an additional scattered light measurement and used to correct [...] Read more.
In this paper, a dispersion of glass beads of different sizes in an ammonium nitrate solution is investigated with the aid of Raman spectroscopy. The signal losses caused by the dispersion are quantified by an additional scattered light measurement and used to correct the measured ammonium nitrate concentration. Each individual glass bead represents an interface at which the excitation laser is deflected from its direction causing distortion in the received Raman signal. It is shown that the scattering losses measured with the scattered light probe correlate with the loss of the Raman signal, which means that the data obtained can be used to correct the measured values. The resulting correction function considers different particle sizes in the range of 2–99 µm as well as ammonium nitrate concentrations of 0–20 wt% and delivers an RMSEP of 1.952 wt%. This correction provides easier process access to dispersions that were previously difficult or impossible to measure. Full article
(This article belongs to the Special Issue Spectral Detection Technology, Sensors and Instruments)
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14 pages, 3598 KiB  
Article
PGPB Consortium Formulation to Increase Fermentable Sugar in Agave tequilana Weber var. Blue: A Study in the Field
by Beatriz G. Guardado-Fierros, Diego A. Tuesta-Popolizio, Miguel A. Lorenzo-Santiago, Ramón Rubio-Cortés, Rosa M. Camacho-Ruíz, José J. Castañeda-Nava, Antonia Gutiérrez-Mora and Silvia M. Contreras-Ramos
Plants 2024, 13(10), 1371; https://doi.org/10.3390/plants13101371 (registering DOI) - 15 May 2024
Abstract
Agave tequilana Weber var. Blue is used as the primary raw material in tequila production due to its fructans (inulin) content. This study evaluates the formulation of a plant-growth-promoting bacteria (PGPB) consortium (Pseudomonas sp. and Shimwellia sp.) to increase sugars in A. [...] Read more.
Agave tequilana Weber var. Blue is used as the primary raw material in tequila production due to its fructans (inulin) content. This study evaluates the formulation of a plant-growth-promoting bacteria (PGPB) consortium (Pseudomonas sp. and Shimwellia sp.) to increase sugars in A. tequilana under field conditions. A total of three doses were tested: low (5 L ha−1), medium (10 L ha−1), and high (15 L ha−1), with a cellular density of 1 × 108 CFU mL−1 and one control treatment (without application). Total reducing sugars (TRS), inulin, sucrose, glucose, fructose, and plant growth were measured in agave plants aged 4–5 years at 0 (T0), 3 (T3), 6 (T6), and 12 (T12) months. Yield was recorded at T12. The TRS increased by 3%, and inulin by 5.3% in the high-dose treatment compared to the control at T12. Additionally, a low content of sucrose, glucose, and fructose (approximately 1%) was detected. At T12, the weight of agave heads increased by 31.2% in the medium dose and 22.3% in the high dose compared to the control. The high dose provided a higher inulin content. The A. tequilana plants were five years old and exhibited growth comparable to the standards for 6–7-year-old plants. This study demonstrates a sustainable strategy for tequila production, optimizing the use of natural resources and enhancing industry performance through increased sugar content and yield. Full article
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18 pages, 5196 KiB  
Article
Screening Antioxidant Components in Different Parts of Dandelion Using Online Gradient Pressure Liquid Extraction Coupled with High-Performance Liquid Chromatography Antioxidant Analysis System and Molecular Simulations
by Xia Cao, Gaoquan Li, Juying Xie, Mengqi Wu, Wenhao Wang, Li Xiao and Zhengming Qian
Molecules 2024, 29(10), 2315; https://doi.org/10.3390/molecules29102315 (registering DOI) - 15 May 2024
Abstract
Utilizing online gradient pressure liquid extraction (OGPLE) coupled with a high-performance liquid chromatography antioxidant analysis system, we examined the antioxidative active components present in both the aerial parts and roots of dandelion. By optimizing the chromatographic conditions, we identified the ferric reducing–antioxidant power [...] Read more.
Utilizing online gradient pressure liquid extraction (OGPLE) coupled with a high-performance liquid chromatography antioxidant analysis system, we examined the antioxidative active components present in both the aerial parts and roots of dandelion. By optimizing the chromatographic conditions, we identified the ferric reducing–antioxidant power system as the most suitable for online antioxidant reactions in dandelion. Compared to offline ultrasonic extraction, the OGPLE method demonstrated superior efficiency in extracting chemical components with varying polarities from the samples. Liquid chromatography–mass spectrometry revealed twelve compounds within the dandelion samples, with nine demonstrating considerable antioxidant efficacy. Of these, the aerial parts and roots of dandelion contained nine and four antioxidant constituents, respectively. Additionally, molecular docking studies were carried out to investigate the interaction between these nine antioxidants and four proteins associated with oxidative stress (glutathione peroxidase, inducible nitric oxide synthase, superoxide dismutase, and xanthine oxidase). The nine antioxidant compounds displayed notable binding affinities below −5.0 kcal/mol with the selected proteins, suggesting potential receptor–ligand interactions. These findings contribute to enhancing our understanding of dandelion and provide a comprehensive methodology for screening the natural antioxidant components from herbs. Full article
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31 pages, 3930 KiB  
Article
Perception of Locals on Multiple Contributions of NTFPs to the Livelihoods of Forest Fringe Communities in Ghana
by Obed Asamoah, Jones Abrefa Danquah, Dastan Bamwesigye, Emmanuel Amoah Boakye, Mark Appiah and Ari Pappinen
Forests 2024, 15(5), 861; https://doi.org/10.3390/f15050861 (registering DOI) - 15 May 2024
Abstract
Forest-dwelling residents frequently collect non-timber forest products (NTFPs) for various reasons, such as food, medicine, firewood, religious reasons, or handicrafts. This study examines the multiple benefits derived from NTFPs and how they contribute to the livelihoods of Ghanaian communities to alleviate poverty. Resources [...] Read more.
Forest-dwelling residents frequently collect non-timber forest products (NTFPs) for various reasons, such as food, medicine, firewood, religious reasons, or handicrafts. This study examines the multiple benefits derived from NTFPs and how they contribute to the livelihoods of Ghanaian communities to alleviate poverty. Resources and services provided by NTFPs have an essential role in providing economic, nutritional, medicinal, cultural, and environmental benefits. This study examines the diverse range of NTFPs locals collect, such as chewing sticks, games, herbs, honey, leaves, mushrooms, pestles, raffia and palms, snails, and straws. In addition to serving different purposes, these NTFPs contribute to income generation, food security, health care, cultural practices, and the protection of the environment. A qualitative research approach was used in this study to collect data through semi-structured interviews and focus groups with members on multiple collections of NTFPs and their multiple benefits. We interviewed 732 residents regarding their multiple NTFPs and their potential to improve the livelihood of the locals. The data for the study were analysed using descriptive statistics. As a result of the survey, the frequency and percentages of responses were analysed for each indicator related to multiple values of NTFPs. Both males and females collected a list of NTFPs during the survey. Regarding NTFPs used for sale, 275 were reported, representing 37.57% of the total. In addition to emphasising the importance of sustainable management practices and equitable distribution of benefits, the study explores the multiple benefits of NTFPs for poverty alleviation in Ghanaian communities. It is essential to ensure the conservation of forest ecosystems and promote inclusive policies to harness the potential of NTFPs and maximise their positive impact on livelihoods. NTFPs provide multiple benefits for Ghanaian communities, including income, nutrition, healthcare, cultural preservation, and environmental sustainability. To promote sustainable development, it is imperative to understand the role of NTFPs and implement appropriate strategies. Full article
(This article belongs to the Special Issue Economic Valuation of Forest Resources)
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15 pages, 4006 KiB  
Article
What Is New about the Semimembranosus Distal Tendon? Ultrasound, Anatomical, and Histological Study with Clinical and Therapeutic Application
by Pere Iglesias-Chamorro, Albert Pérez-Bellmunt, Sara Ortiz-Miguel, Ingrid Möller, Juan Blasi, Juan Ortiz-Sagristà, Carlo Martinoli, Xavier Sanjuan and Maribel Miguel-Pérez
Life 2024, 14(5), 631; https://doi.org/10.3390/life14050631 (registering DOI) - 15 May 2024
Abstract
The semimembranosus muscle inserts into several tendons that are associated with some pathologies. Although ultrasound is useful for studying, diagnosing, and managing these pathologies, the correct interpretation of any images requires a clear knowledge of the related anatomical structures and the inter-related functions. [...] Read more.
The semimembranosus muscle inserts into several tendons that are associated with some pathologies. Although ultrasound is useful for studying, diagnosing, and managing these pathologies, the correct interpretation of any images requires a clear knowledge of the related anatomical structures and the inter-related functions. We studied 38 cryopreserved non-paired knees from adult anatomical specimens and 4 non-paired knees from 29 to 38-week-old fetuses. The semimembranosus muscle and its tendons were located, observed, and injected under ultrasound guidance. The macroscopic anatomy was studied using dissection and anatomical cuts and the tendons were analyzed histologically. Measurements of muscle were taken 10 cm from the medial epicondyle and just before the tendon divided. The ultrasound facilitated the identification of the different divisions of the tendon of semimembranosus muscle and the rotation of the muscle and tendon from medial to posterior. An anatomical study confirmed this rotation and revealed an average width, thickness, and diameter of 38.29 mm, 14.36 mm, and 112.64 mm, respectively. Important relationships were observed between the divisions of the main tendons and the medial collateral ligament, the posterior side of the knee and popliteus muscle. This information can help to explain knee pathologies and facilitate rehabilitation after surgery. Full article
(This article belongs to the Special Issue Topographic and Functional Anatomy of Musculoskeletal System)
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13 pages, 10556 KiB  
Article
Influence of HiPIMS Pulse Widths on the Structure and Properties of Copper Films
by Xincheng Liu, Heda Bai, Yongjie Ren, Jin Li and Xiangli Liu
Materials 2024, 17(10), 2342; https://doi.org/10.3390/ma17102342 (registering DOI) - 15 May 2024
Abstract
High-power pulse magnetron sputtering is a new type of magnetron sputtering technology that has advantages such as high peak power density and a high ionization rate compared to DC magnetron sputtering. In this paper, we report the effects of different pulse widths on [...] Read more.
High-power pulse magnetron sputtering is a new type of magnetron sputtering technology that has advantages such as high peak power density and a high ionization rate compared to DC magnetron sputtering. In this paper, we report the effects of different pulse widths on the current waveform and plasma spectrum of target material sputtering, as well as the structure and properties of Cu films prepared under the same sputtering voltage and duty cycle. Extending the pulse width can make the sputtering enter the self-sputtering (SS) stage and improve the ion quantity of sputtered particles. The Cu film prepared by HiPIMS with long pulse width has higher bond strength and lower electrical resistivity compared to the Cu film prepared by short pulse width. In terms of microstructure, the Cu film prepared by HiPIMS with the long pulse width has a larger grain size and lower micro-surface roughness. When the pulse width is bigger than 200 μs, the microstructure of the Cu film changes from granular to branched. This transformation reduces the interface on the Cu film, further reducing the resistivity of the Cu film. Compared to short pulses, long pulse width HiPIMS can obtain higher quality Cu films. This result provides a new process approach for preparing high-quality Cu films using HiPIMS technology. Full article
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14 pages, 1530 KiB  
Article
Coordinated Reconfiguration with Energy Storage System for Load Restoration in Integrated Electric and Heating Systems
by Ke Wang, Jing Wang, Pengfei Su and Song Zhang
Electronics 2024, 13(10), 1931; https://doi.org/10.3390/electronics13101931 (registering DOI) - 15 May 2024
Abstract
Coordinated load restoration of integrated electric and heating systems (IEHSs) has become indispensable following natural disasters due to the increasingly relevant integration between power distribution systems (PDS) and district heating systems (DHS). In this paper, a coordinated reconfiguration with an energy storage system [...] Read more.
Coordinated load restoration of integrated electric and heating systems (IEHSs) has become indispensable following natural disasters due to the increasingly relevant integration between power distribution systems (PDS) and district heating systems (DHS). In this paper, a coordinated reconfiguration with an energy storage system is introduced to optimize load restoration in the aftermath of natural catastrophes. By modifying the DHS network topology, it is possible to maintain an uninterrupted energy supply in unfaulty zones by shifting heat loads among sources and adjusting the operation of coupled devices. Additionally, energy storage systems with rapid response times are implemented to enhance load restoration efficiency, especially when working in conjunction with multiple energy sources. Comprehensive case analyses have been systematically conducted to demonstrate the impact of coordinated reconfiguration with energy storage systems on improving load restoration. Full article
(This article belongs to the Special Issue Hydrogen and Fuel Cells: Innovations and Challenges)
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16 pages, 1667 KiB  
Article
Feasibility of Different Methods for Separating n-Hexane and Ethanol
by Aleksandra Sander, Ana Petračić, Marko Rogošić, Mirela Župan, Leonarda Frljak and Matija Cvetnić
Separations 2024, 11(5), 151; https://doi.org/10.3390/separations11050151 (registering DOI) - 15 May 2024
Abstract
Conventional distillation methods cannot effectively separate the components of an azeotropic mixture since both phases have the same composition, thereby preventing further separation. Additional techniques such as pressure swing distillation or distillation with entrainers are often employed to overcome this limitation and achieve [...] Read more.
Conventional distillation methods cannot effectively separate the components of an azeotropic mixture since both phases have the same composition, thereby preventing further separation. Additional techniques such as pressure swing distillation or distillation with entrainers are often employed to overcome this limitation and achieve separation. The aim of this investigation was to select the most effective method for separating n-hexane and ethanol. The feasibility of three methods was analyzed: reduced pressure distillation, extractive distillation, and liquid–liquid extraction. The mutual solubility of n-hexane and prepared deep eutectic solvents (DESs) (nine hydrophilic: choline chloride with glycerol, ethylene glycol, or carboxylic acid (malic, citric, glycolic); tetramethylammonium chloride with glycolic acid; lactic acid with glycerol; K2CO3 with glycerol or ethylene glycol; two hydrophobic: menthol with decanoic or dodecanoic acid) was experimentally determined. Extraction experiments were conducted to test the solubility of DESs in the feed mixture. The effect of changing DES-to-feed mass ratio was further investigated with choline chloride–glycerol (1:2). The same DES and both hydrophobic DESs were able to increase the relative volatility and enhance the separation of ethanol and n-hexane. Based on the obtained results, extraction was selected as the most effective method for the separation of n-hexane and ethanol. Full article
(This article belongs to the Section Purification Technology)
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32 pages, 1481 KiB  
Review
Green Synthesis, Characterization and Application of Silver Nanoparticles Using Bioflocculant: A Review
by Nkanyiso C. Nkosi, Albertus K. Basson, Zuzingcebo G. Ntombela, Nkosinathi G. Dlamini and Rajasekhar V. S. R. Pullabhotla
Bioengineering 2024, 11(5), 492; https://doi.org/10.3390/bioengineering11050492 (registering DOI) - 15 May 2024
Abstract
Nanotechnology has emerged as an effective means of removing contaminants from water. Traditional techniques for producing nanoparticles, such as physical methods (condensation and evaporation) and chemical methods (oxidation and reduction), have demonstrated high efficiency. However, these methods come with certain drawbacks, including the [...] Read more.
Nanotechnology has emerged as an effective means of removing contaminants from water. Traditional techniques for producing nanoparticles, such as physical methods (condensation and evaporation) and chemical methods (oxidation and reduction), have demonstrated high efficiency. However, these methods come with certain drawbacks, including the significant energy requirement and the use of costly and hazardous chemicals that may cause nanoparticles to adhere to surfaces. To address these limitations, researchers are actively developing alternative procedures that are cost-effective, environmentally safe, and user-friendly. One promising approach involves biological synthesis, which utilizes plants or microorganisms as reducing and capping agents. This review discusses various methods of nanoparticle synthesis, with a focus on biological synthesis using naturally occurring bioflocculants from microorganisms. Bioflocculants offer several advantages, including harmlessness, biodegradability, and minimal secondary pollution. Furthermore, the review covers the characterization of synthesized nanoparticles, their antimicrobial activity, and cytotoxicity. Additionally, it explores the utilization of these NPs in water purification and dye removal processes. Full article
(This article belongs to the Special Issue Biological Wastewater Treatment and Resource Recovery)
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13 pages, 820 KiB  
Communication
Catalytic Activity of 2-Imino-1,10-phenthrolyl Fe/Co Complexes via Linear Machine Learning
by Zubair Sadiq, Wenhong Yang, Md Mostakim Meraz, Weisheng Yang and Wen-Hua Sun
Molecules 2024, 29(10), 2313; https://doi.org/10.3390/molecules29102313 (registering DOI) - 15 May 2024
Abstract
In anticipation of the correlations between catalyst structures and their properties, the catalytic activities of 2-imino-1,10-phenanthrolyl iron and cobalt metal complexes are quantitatively investigated via linear machine learning (ML) algorithms. Comparatively, the Ridge Regression (RR) model has captured more robust predictive performance compared [...] Read more.
In anticipation of the correlations between catalyst structures and their properties, the catalytic activities of 2-imino-1,10-phenanthrolyl iron and cobalt metal complexes are quantitatively investigated via linear machine learning (ML) algorithms. Comparatively, the Ridge Regression (RR) model has captured more robust predictive performance compared with other linear algorithms, with a correlation coefficient value of R2 = 0.952 and a cross-validation value of Q2 = 0.871. It shows that different algorithms select distinct types of descriptors, depending on the importance of descriptors. Through the interpretation of the RR model, the catalytic activity is potentially related to the steric effect of substituents and negative charged groups. This study refines descriptor selection for accurate modeling, providing insights into the variation principle of catalytic activity. Full article
(This article belongs to the Special Issue Deep Learning in Molecular Science and Technology)
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19 pages, 539 KiB  
Article
Research Data Management in the Croatian Academic Community: A Research Study
by Radovan Vrana
Publications 2024, 12(2), 16; https://doi.org/10.3390/publications12020016 (registering DOI) - 15 May 2024
Abstract
This paper presents the results of an empirical research study of Croatian scientists’ use and management of research data. This research study was carried out from 28 June 2023 until 31 August 2023 using an online questionnaire consisting of 28 questions. The answers [...] Read more.
This paper presents the results of an empirical research study of Croatian scientists’ use and management of research data. This research study was carried out from 28 June 2023 until 31 August 2023 using an online questionnaire consisting of 28 questions. The answers of 584 respondents working in science were filtered out for further analysis. About three-quarters of the respondents used the research data of other scientists successfully. Research data were mostly acquired from colleagues from the same department or institution. Roughly half of the respondents did not ask other scientists directly for their research data. Research data are important to the respondents mostly for raising the quality of research. Repeating someone else’s research by using their research data is still a problem. Less than one-third of the respondents provided full access to their research data mostly due to their fear of misuse. The benefits of research data sharing were recognized but few of the respondents received any reward for it. Archiving research data is a significant problem for the respondents as they dominantly use their own computers prone to failure for that activity and do not think about long-term preservation. Finally, the respondents lacked deeper knowledge of research data management. Full article
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16 pages, 18541 KiB  
Article
Changes in Metabolite Profiles of Chinese Soy Sauce at Different Time Durations of Fermentation Studied by 1H-NMR-Based Metabolomics
by Jalal Uddin, Samra Yasmin, Ghulam Mustafa Kamal, Mufarreh Asmari, Muhammad Saqib and Heyu Chen
Metabolites 2024, 14(5), 285; https://doi.org/10.3390/metabo14050285 (registering DOI) - 15 May 2024
Abstract
Fermentation parameters, especially the duration, are important in imparting a peculiar taste and flavor to soy sauce. The main purpose of this research was to monitor metabolic changes occurring during the various time intervals of the fermentation process. NMR-based metabolomics was used to [...] Read more.
Fermentation parameters, especially the duration, are important in imparting a peculiar taste and flavor to soy sauce. The main purpose of this research was to monitor metabolic changes occurring during the various time intervals of the fermentation process. NMR-based metabolomics was used to monitor the compositional changes in soy sauce during fermentation. The 1H-NMR spectra of the soy sauce samples taken from the fermentation tanks at 0 to 8 months were analyzed using 1H-NMR spectroscopy, and the obtained spectra were analyzed by multivariate statistical analysis. The Principal Component Analysis (PCA) and Partial Least Square Discriminate analysis (PLSDA) revealed the separation of samples fermented for various time durations under identical conditions. Key metabolites shown by corresponding loading plots exhibited variations in amino acids (lysine, threonine, isoleucine, etc.), acetate, glucose, fructose, sucrose, ethanol, glycerol, and others. The levels of ethanol in soy sauce increased with longer fermentation durations, which can be influenced by both natural fermentation and the intentional addition of ethanol as a preservative. The study shows that the variation in metabolite can be very efficiently monitored using 1H-NMR-based metabolomics, thus suggestion to optimize the time duration to get the soy sauce product with the desired taste and flavor. Full article
(This article belongs to the Special Issue Application of Metabolomics in Food Fermentation)
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20 pages, 9234 KiB  
Article
Study on Spatial-Temporal Disparities and Factors Influencing Electricity Consumption Carbon Emissions in China
by Pinjie Xie, Sheng Wang, Jie Liao and Feihu Sun
Sustainability 2024, 16(10), 4128; https://doi.org/10.3390/su16104128 (registering DOI) - 15 May 2024
Abstract
Investigating the factors influencing the spatial-temporal disparities in China’s electricity consumption carbon emissions (ECCEs) will be of great help to advancing the reduction in carbon emissions on the consumption side of electricity. Based on the measurement of the ECCEs in 30 Chinese provinces [...] Read more.
Investigating the factors influencing the spatial-temporal disparities in China’s electricity consumption carbon emissions (ECCEs) will be of great help to advancing the reduction in carbon emissions on the consumption side of electricity. Based on the measurement of the ECCEs in 30 Chinese provinces between 2005 and 2021, we utilized the natural breakpoint method and the Dagum Gini coefficient to analyze the spatial-temporal disparities in ECCEs at the provincial and regional levels, and then we used Geodetector to explore the factors influencing the spatial-temporal disparities in ECCEs. The results revealed the following: (1) There were obvious inter-provincial spatial disparities in ECCEs, with coastal provinces such as Jiangsu and Guangdong consistently ranking at the top of the country and inland provinces such as Qinghai and Yunnan having relatively low carbon emission values. (2) The overall disparities in China’s ECCEs fluctuated and rose, with inter-regional disparities being the primary source of the overall disparities. (3) Economic development, industrialization level, population density, and foreign direct investment all had strong explanations for the spatial-temporal disparities in China’s ECCEs. When all these influencing factors were spatially superimposed, their effects were enhanced. Full article
(This article belongs to the Special Issue Energy Economy and Sustainable Energy)
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18 pages, 5376 KiB  
Article
Preparation of Steamed Purple Sweet Potato-Based Films Containing Mandarin Essential Oil for Smart Packaging
by Ruixue Yue, Yiren Zhang, Jun Liu and Jian Sun
Molecules 2024, 29(10), 2314; https://doi.org/10.3390/molecules29102314 (registering DOI) - 15 May 2024
Abstract
Anthocyanin-rich steamed purple sweet potato (SPSP) is a suitable raw material to produce smart packaging films. However, the application of SPSP-based films is restricted by the low antimicrobial activity of anthocyanins. In this study, SPSP-based smart packaging films were produced by adding mandarin [...] Read more.
Anthocyanin-rich steamed purple sweet potato (SPSP) is a suitable raw material to produce smart packaging films. However, the application of SPSP-based films is restricted by the low antimicrobial activity of anthocyanins. In this study, SPSP-based smart packaging films were produced by adding mandarin essential oil (MEO) as an antimicrobial agent. The impact of MEO content (3%, 6%, and 9%) on the structures, properties, and application of SPSP-based films was measured. The results showed that MEO created several pores within films and reduced the hydrogen bonding system and crystallinity of films. The dark purple color of the SPSP films was almost unchanged by MEO. MEO significantly decreased the light transmittance, water vapor permeability, and tensile strength of the films, but remarkably increased the oxygen permeability, thermal stability, and antioxidant and antimicrobial properties of the films. The SPSP-MEO films showed intuitive color changes at different acid-base conditions. The purple-colored SPSP-MEO films turned blue when chilled shrimp and pork were not fresh. The MEO content greatly influenced the structures, physical properties, and antioxidant and antimicrobial activities of the films. However, the MEO content had no impact on the color change ability of the films. The results suggested that SPSP-MEO films have potential in the smart packaging of protein-rich foods. Full article
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16 pages, 4315 KiB  
Article
A Variational Mode Decomposition Analysis and Prediction Simulation of DO in the Water Environment of the Chengdu Area, China
by Mei Li, Deke Wang, Rui Xu and Kexing Chen
Water 2024, 16(10), 1405; https://doi.org/10.3390/w16101405 (registering DOI) - 15 May 2024
Abstract
DO is an important index to characterize environmental water quality. The time series fluctuation of DO can be analyzed via frequency band decomposition, which is very valuable for water quality simulations. In this paper, DO in the Chengdu area of China was studied [...] Read more.
DO is an important index to characterize environmental water quality. The time series fluctuation of DO can be analyzed via frequency band decomposition, which is very valuable for water quality simulations. In this paper, DO in the Chengdu area of China was studied using variational mode decomposition with daily meteorological data and water quality data from 2020 to 2022. After variable decomposition, the DO data were first decomposed into different frequency band signals named IMF1, IMF2, IMF3, IMF4, and IMF5. IMF1 represented the low-frequency signal with long-term trend characteristics of the data. IMF2 to IMF5 represented the high-frequency signal with short-term mutation characteristics of the data. By combining the variable decomposition results with the correlation analysis, it was found that the long-term trend characteristics of DO are affected by the superposition of meteorological factors, hydrological factors, and water pollution factors but have a weak correlation with any single determining factor. The air temperature, water temperature, phosphorus, air pressure, pH value, chemical oxygen demand, and nitrogen were relatively strongly correlated with the long-term trend characteristics of DO. The short-term mutation characteristics of DO were mainly determined using the characteristics of the water body itself, while the influence of the meteorological factors could basically be ignored. The water temperature, pH value, and eutrophication were the biggest influencing factors. Then, a predictive framework combining frequency division with a deep learning model or a machine learning model was constructed to predict DO. The predicted results of GRU, random forest, and XGBoost with and without the framework were compared. It was shown that, after removing the interference factors with correlations less than 0.3, the predicted value of DO was much closer to the actual value. The XGBoost and random forest models with decomposed signals had a high degree of simulation fitting and could be used to predict DO in the Chengdu area. The above research approach can be applied to further explore the prediction of various pollution factors in different areas of China. Full article
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14 pages, 738 KiB  
Review
Modifications to Enhance Outcomes of Family-Based Treatment for Anorexia Nervosa: A Scoping Review
by Signe Holm Pedersen, Lasse Carlsson and Mette Bentz
Psychiatry Int. 2024, 5(2), 217-230; https://doi.org/10.3390/psychiatryint5020015 (registering DOI) - 15 May 2024
Abstract
Family-based treatment (FBT) is recommended for anorexia nervosa (AN) in young people (YP). However, a substantial proportion of YP undergoing FBT do not recover. Several modifications to standard FBT have been tested to improve recovery rates. This review provides an updated overview of [...] Read more.
Family-based treatment (FBT) is recommended for anorexia nervosa (AN) in young people (YP). However, a substantial proportion of YP undergoing FBT do not recover. Several modifications to standard FBT have been tested to improve recovery rates. This review provides an updated overview of empirically tested modifications to FBT for AN in YP and estimates whether such modifications increase the percentage recovering. Computerized searches performed in five databases resulted in the inclusion of 43 papers (representing 40 original studies), highlighting that a variety of modifications to standard FBT have been tested and appear promising. However, only 11 studies compared the results of a modification to standard FBT. In conclusion, some modifications, such as parent-focused treatment, the addition of home treatment, or interventions for families at risk of non-response, appear to have the potential to improve the recovery rate, either at the group or subgroup level. Other modifications, such as FBT-based guided self-help, virtually delivered FBT, or FBT delivered during in- or day-patient stays, enable the dissemination of FBT principles to other contexts and to patient groups with limited access. Small additions to FBT, such as a workshop or parent-to-parent consultation, do not seem to improve the recovery rate. Full article
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