The 2023 MDPI Annual Report has
been released!
 
67 pages, 5953 KiB  
Review
N-Heterocycles as Promising Antiviral Agents: A Comprehensive Overview
by Gulraiz Ahmad, Maria Sohail, Muhammad Bilal, Nasir Rasool, Muhammad Usman Qamar, Codrut Ciurea, Luigi Geo Marceanu and Catalin Misarca
Molecules 2024, 29(10), 2232; https://doi.org/10.3390/molecules29102232 (registering DOI) - 10 May 2024
Abstract
Viruses are a real threat to every organism at any stage of life leading to extensive infections and casualties. N-heterocycles can affect the viral life cycle at many points, including viral entrance into host cells, viral genome replication, and the production of [...] Read more.
Viruses are a real threat to every organism at any stage of life leading to extensive infections and casualties. N-heterocycles can affect the viral life cycle at many points, including viral entrance into host cells, viral genome replication, and the production of novel viral species. Certain N-heterocycles can also stimulate the host’s immune system, producing antiviral cytokines and chemokines that can stop the reproduction of viruses. This review focused on recent five- or six-membered synthetic N-heterocyclic molecules showing antiviral activity through SAR analyses. The review will assist in identifying robust scaffolds that might be utilized to create effective antiviral drugs with either no or few side effects. Full article
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18 pages, 7925 KiB  
Communication
GreenTray®, a TIS Bioreactor for Plant Micropropagation and Abiotic or Biotic Stress Bioassays
by Ramon Dolcet-Sanjuan, Maria Casanovas, Sandra Franquesa, Eva Alsina, Francisca Carrasco-Cuello, Estanis Torres, Josep Rufat, Cristina Solsona and Neus Teixido
Appl. Sci. 2024, 14(10), 4051; https://doi.org/10.3390/app14104051 (registering DOI) - 10 May 2024
Abstract
The temporary immersion system bioreactor named GreenTray® presents advantages over the existing ones. Firstly, there is no need to use forceps to move the shoots or plantlets in or out of the recipient, nor is the use of a scalpel necessary to [...] Read more.
The temporary immersion system bioreactor named GreenTray® presents advantages over the existing ones. Firstly, there is no need to use forceps to move the shoots or plantlets in or out of the recipient, nor is the use of a scalpel necessary to divide them. Secondly, the basis of the shoot can remain in the GreenTray® and can sprout again over several cycles of growth. These two characteristics reduce the costs in the process of micropropagation. In addition, shoot or plantlet development is enhanced by the aeration of the recipient, thus enriching the recipient’s atmospheric CO2. This article describes and provides images and values of interest in (1) the micropropagation process of some commercial Prunus or Pyrus rootstocks; (2) the plantlet growth under autotrophic conditions; and (3) the inoculation of plants with pathogens that reproduce in vitro the symptoms observed in vivo, using the GreenTray® bioreactor. Full article
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25 pages, 307 KiB  
Article
Non-Linear Association of Exercise with Animal Protein Consumption among U.S. Adults
by Justin D. Bina and Glynn T. Tonsor
Nutrients 2024, 16(10), 1438; https://doi.org/10.3390/nu16101438 (registering DOI) - 10 May 2024
Abstract
Supply chain disruptions, human and animal health concerns, and environmental impacts of livestock production have spurred renewed attention to animal protein consumption in the U.S. Prior research has sought to better understand animal protein consumption by assessing demographic and socioeconomic determinants. However, physical [...] Read more.
Supply chain disruptions, human and animal health concerns, and environmental impacts of livestock production have spurred renewed attention to animal protein consumption in the U.S. Prior research has sought to better understand animal protein consumption by assessing demographic and socioeconomic determinants. However, physical exercise represents a behavioral determinant of consumption that is societally important and, thus far, has not been considered in empirical assessments. Our objective was to quantify the association of exercise with the consumption of total protein, beef, pork, poultry, seafood, eggs, and dairy among U.S. adults. We analyzed 24 h dietary recall and physical activity data from adults in the 2007–2018 National Health and Nutrition Examination Survey (NHANES). The association of exercise with protein consumption (total and disaggregated animal protein) was assessed using ordinary least squares and multivariate Tobit regression. Non-linear associations of exercise with total protein consumption were found, with the magnitude of association highest at 121–180 min per day of exercise. Non-linear associations were also found with animal protein consumption, which differed in sign and magnitude across protein sources. The magnitudes of association, paired with a sizable share of the study sample engaged in exercise, suggest a substantial influence of exercise on protein consumption habits in the U.S. Full article
(This article belongs to the Special Issue Nutritional Habits in a Sports Context)
14 pages, 1565 KiB  
Article
Activity of NAD(P)H-Oxidoreductases in Ovarian Cancer
by Maria V. Fedorova, Vladimir I. Voznesensky, Elena A. Sosnova and Elena V. Proskurnina
Biomedicines 2024, 12(5), 1052; https://doi.org/10.3390/biomedicines12051052 (registering DOI) - 10 May 2024
Abstract
Reactive oxygen species (ROS) play an important and controversial role in carcinogenesis. Microsomal redox chains containing NADH- and NADPH-dependent oxidoreductases are among the main sites of intracellular ROS synthesis, but their role in the oxidative balance has not been fully studied. Here, we [...] Read more.
Reactive oxygen species (ROS) play an important and controversial role in carcinogenesis. Microsomal redox chains containing NADH- and NADPH-dependent oxidoreductases are among the main sites of intracellular ROS synthesis, but their role in the oxidative balance has not been fully studied. Here, we studied the activity of cytochrome b5 reductase (CYB5R) and cytochrome P450 reductase (CYPOR) in ovarian cancer tissues and cells isolated from peritoneal fluid, along with the antioxidant capacity of peritoneal fluid. We used the developed a chemiluminescence assay based on stimulation with NADH and NADPH, which reflects the activity of CYB5R and CYPOR, respectively. The activity of CYB5R and CYPOR was significantly higher in moderately and poorly differentiated ovarian adenocarcinomas compared with well-differentiated adenocarcinomas and cystadenomas. For the chemotherapy-resistant tumors, the activity of tissue CYB5R and CYPOR was lower compared to the non-resistant tumors. In the peritoneal fluid, the antioxidant capacity significantly increased in this series, benign tumors < well-differentiated < moderately and poorly differentiated adenocarcinomas, so the antioxidant excess was observed for moderately and poorly differentiated adenocarcinomas. The antioxidant capacity of peritoneal fluid and the activity of CYB5R and CYPOR of cells isolated from peritoneal fluid were characterized by a direct moderate correlation for moderately and poorly differentiated adenocarcinomas. These results indicate the significant role of NAD(P)H oxidoreductases and the antioxidant potential of peritoneal fluid in cancer biochemistry. The parameters studied are useful for diagnostics and prognostics. The developed assay can be used to analyze CYB5R and CYPOR activity in other tissues and cells. Full article
(This article belongs to the Section Cancer Biology and Oncology)
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14 pages, 287 KiB  
Article
Analyzing Strawberry Preferences: Best–Worst Scaling Methodology and Purchase Styles
by Antonina Sparacino, Selene Ollani, Lorenzo Baima, Michael Oliviero, Danielle Borra, Mingze Rui and Giulia Mastromonaco
Foods 2024, 13(10), 1474; https://doi.org/10.3390/foods13101474 (registering DOI) - 10 May 2024
Abstract
This research has investigated Italian consumers’ preferences for and purchasing behaviors of strawberries utilizing the Best–Worst Scaling methodology (BWS). This approach enables the key factors that influence strawberry purchasing decisions to be identified and different choice groups to be characterized. To achieve this [...] Read more.
This research has investigated Italian consumers’ preferences for and purchasing behaviors of strawberries utilizing the Best–Worst Scaling methodology (BWS). This approach enables the key factors that influence strawberry purchasing decisions to be identified and different choice groups to be characterized. To achieve this goal, a survey was conducted on a sample of 496 respondents living in the metropolitan area of Milan (North Italy). The declared preferences of the individuals for 12 strawberry characteristics, divided into intrinsic, extrinsic, and credence attributes, were first measured. A Latent Class Analysis (LCA) was then performed to identify different clusters of consumers according to the individuals’ preferences. Subsequently, the heterogeneity of the clusters was tested, using the Chi-square test, and sociodemographic characteristics and purchasing habits were considered. The results suggest that the most important attribute in the choice of strawberries was appearance, highlighting the importance of preserving it throughout the supply chain, followed by one of the increasingly important aspects of diets, which is health benefits. The attribute considered the least important was the brand. This study demonstrates, from a holistic point of view, that sociodemographic characteristics, food habits, and perceptions of different strawberry attributes influence consumers’ preferences and behaviors. Practical implications suggest a new prospective for communication marketing strategies for producers, creating a better brand identity and highlighting in their marketing all of the aspects that consumers would like to know about the fruits they choose as quality certifications. Full article
(This article belongs to the Topic Consumer Behaviour and Healthy Food Consumption)
16 pages, 2006 KiB  
Review
Excess of Nutrients in Prefabricated or Compact Wastewater Treatment Plants: Review, Solution Alternative, and Modeling for Verification
by Marco Antonio Díaz, David Blanco, Rosa Chandia-Jaure, Danny Lobos Calquin, Alejandra Decinti, Pedro Naranjo and María Belén Almendro-Candel
Water 2024, 16(10), 1354; https://doi.org/10.3390/w16101354 (registering DOI) - 10 May 2024
Abstract
Chile has numerous areas that lack sewage collection, including in the capital city. Sanitation in these cases is managed through individual solutions like septic tanks or small wastewater treatment plants (WWTPs) that use biological treatment, usually activated sludge with extended aeration. In general, [...] Read more.
Chile has numerous areas that lack sewage collection, including in the capital city. Sanitation in these cases is managed through individual solutions like septic tanks or small wastewater treatment plants (WWTPs) that use biological treatment, usually activated sludge with extended aeration. In general, the design of these systems adheres to the quality standards mandated by regulations for discharge, infiltration, or irrigation. In this scenario, traditional methods like increasing dissolved oxygen (DO) or hydraulic retention time (HRT) were unable to effectively reduce excessive nutrients. Therefore, literature related to nutrient excess and denitrification systems is consulted and reviewed to compile different solutions suitable for the presented issue. Potential solutions were modeled and verified using the free simulation software WRc STOAT. The software accurately predicted the unsatisfactory results of the current setup and provided parameters for the proposed modifications. Experience, precise user definition, influential characteristics, and modeling are essential in the design of WWTPs. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
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22 pages, 8863 KiB  
Article
LKB1 Loss Correlates with STING Loss and, in Cooperation with β-Catenin Membranous Loss, Indicates Poor Prognosis in Patients with Operable Non-Small Cell Lung Cancer
by Eleni D. Lagoudaki, Anastasios V. Koutsopoulos, Maria Sfakianaki, Chara Papadaki, Georgios C. Manikis, Alexandra Voutsina, Maria Trypaki, Eleftheria Tsakalaki, Georgia Fiolitaki, Dora Hatzidaki, Emmanuel Yiachnakis, Dimitra Koumaki, Dimitrios Mavroudis, Maria Tzardi, Efstathios N. Stathopoulos, Kostas Marias, Vassilis Georgoulias and John Souglakos
Cancers 2024, 16(10), 1818; https://doi.org/10.3390/cancers16101818 (registering DOI) - 10 May 2024
Abstract
To investigate the incidence and prognostically significant correlations and cooperations of LKB1 loss of expression in non-small cell lung cancer (NSCLC), surgical specimens from 188 metastatic and 60 non-metastatic operable stage I-IIIA NSCLC patients were analyzed to evaluate their expression of LKB1 and [...] Read more.
To investigate the incidence and prognostically significant correlations and cooperations of LKB1 loss of expression in non-small cell lung cancer (NSCLC), surgical specimens from 188 metastatic and 60 non-metastatic operable stage I-IIIA NSCLC patients were analyzed to evaluate their expression of LKB1 and pAMPK proteins in relation to various processes. The investigated factors included antitumor immunity response regulators STING and PD-L1; pro-angiogenic, EMT and cell cycle targets, as well as metastasis-related (VEGFC, PDGFRα, PDGFRβ, p53, p16, Cyclin D1, ZEB1, CD24) targets; and cell adhesion (β-catenin) molecules. The protein expression levels were evaluated via immunohistochemistry; the RNA levels of LKB1 and NEDD9 were evaluated via PCR, while KRAS exon 2 and BRAFV600E mutations were evaluated by Sanger sequencing. Overall, loss of LKB1 protein expression was observed in 21% (51/248) patients and correlated significantly with histotype (p < 0.001), KRAS mutations (p < 0.001), KC status (concomitant KRAS mutation and p16 downregulation) (p < 0.001), STING loss (p < 0.001), and high CD24 expression (p < 0.001). STING loss also correlated significantly with loss of LKB1 expression in the metastatic setting both overall (p = 0.014) and in lung adenocarcinomas (LUACs) (p = 0.005). Additionally, LKB1 loss correlated significantly with a lack of or low β-catenin membranous expression exclusively in LUACs, both independently of the metastatic status (p = 0.019) and in the metastatic setting (p = 0.007). Patients with tumors yielding LKB1 loss and concomitant nonexistent or low β-catenin membrane expression experienced significantly inferior median overall survival of 20.50 vs. 52.99 months; p < 0.001 as well as significantly greater risk of death (HR: 3.32, 95% c.i.: 1.71–6.43; p <0.001). Our findings underscore the impact of the synergy of LKB1 with STING and β-catenin in NSCLC, in prognosis. Full article
(This article belongs to the Special Issue Advancements in Lung Cancer Surgical Treatment and Prognosis)
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17 pages, 8464 KiB  
Article
CRTED: Few-Shot Object Detection via Correlation-RPN and Transformer Encoder–Decoder
by Jinlong Chen, Kejian Xu, Yi Ning, Lianyuan Jiang and Zhi Xu
Electronics 2024, 13(10), 1856; https://doi.org/10.3390/electronics13101856 (registering DOI) - 10 May 2024
Abstract
Few-shot object detection (FSOD) aims to address the challenge of requiring a substantial number of annotations for training in conventional object detection, which is very labor-intensive. However, the existing few-shot methods achieve high precision with the sacrifice of time for exhaustive fine-tuning or [...] Read more.
Few-shot object detection (FSOD) aims to address the challenge of requiring a substantial number of annotations for training in conventional object detection, which is very labor-intensive. However, the existing few-shot methods achieve high precision with the sacrifice of time for exhaustive fine-tuning or have poor performance in novel-class adaptation. We presume the major reason is that the valuable correlation feature among different categories is insufficiently exploited, hindering the generalization of knowledge from base to novel categories for object detection. In this paper, we propose few-shot object detection via Correlation-RPN and transformer encoder–decoder (CRTED), a novel training network to learn object-relevant features of inter-class correlation and intra-class compactness while suppressing object-agnostic features in the background with limited annotated samples. And we also introduce a four-way tuple-contrast training strategy to positively activate the training progress of our object detector. Experiments over two few-shot benchmarks (Pascal VOC, MS-COCO) demonstrate that our proposed CRTED without further fine-tuning can achieve comparable performance with current state-of-the-art fine-tuned works. The codes and pre-trained models will be released. Full article
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19 pages, 2104 KiB  
Article
Effect of Fiber and Insect Powder Addition on Selected Organoleptic and Nutritional Characteristics of Gluten-Free Bread
by Alexandra Tauferová, Martina Pečová, Aneta Czerniková, Dani Dordević and Bohuslava Tremlová
Processes 2024, 12(5), 970; https://doi.org/10.3390/pr12050970 (registering DOI) - 10 May 2024
Abstract
A wide range of gluten-free bakery products are already available on the market. However, they often have a low proportion of fiber and inferior sensory properties when compared to classic baked goods. The aim of this work was to evaluate the influence of [...] Read more.
A wide range of gluten-free bakery products are already available on the market. However, they often have a low proportion of fiber and inferior sensory properties when compared to classic baked goods. The aim of this work was to evaluate the influence of the addition of different types of fiber and insect powder on selected organoleptic and nutritional properties of gluten-free pieces of bread and to reformulate a recipe for gluten-free bread. Twenty experimental samples were prepared with different types and percentages of fiber, either alone or in combination. Sensory analysis, instrumental texture analysis, and chemical analyses, including predicted glycemic index, were carried out. A total of 16 of the 24 fiber-enriched samples received an average or slightly above-average rating. The samples containing the fiber mixture without insect powder and the sample containing 9% flaxseed performed best in the overall evaluation. The combination of different types of plant fibers simultaneously with the incorporation of insect powder in a low concentration appears to be advantageous, both from the viewpoint of sensory acceptability and also from the viewpoint of the potential for increasing the polyphenol content and antioxidant capacity. This study lists the sensorially acceptable range of fiber concentrations, which can be a guide for the bakery industry. Full article
(This article belongs to the Section Food Process Engineering)
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12 pages, 2032 KiB  
Article
Metal–Organic Framework Fe-BTC as Heterogeneous Catalyst for Electro-Fenton Treatment of Tetracycline
by Taylor Mackenzie Fisher, Alexsandro J. dos Santos and Sergi Garcia-Segura
Catalysts 2024, 14(5), 314; https://doi.org/10.3390/catal14050314 (registering DOI) - 10 May 2024
Abstract
This study explores the use of the iron-containing metal–organic framework (MOF), Basolite®F300, as a heterogeneous catalyst for electrochemically-driven Fenton processes. Electrochemical advanced oxidation processes (EAOPs) have shown promise on the abatement of recalcitrant organic pollutants such as pharmaceuticals. Tetracyclines (TC) are [...] Read more.
This study explores the use of the iron-containing metal–organic framework (MOF), Basolite®F300, as a heterogeneous catalyst for electrochemically-driven Fenton processes. Electrochemical advanced oxidation processes (EAOPs) have shown promise on the abatement of recalcitrant organic pollutants such as pharmaceuticals. Tetracyclines (TC) are a frequently used class of antibiotics that are now polluting surface water and groundwater sources worldwide. Acknowledging the fast capability of EAOPs to treat persistent pharmaceutical pollutants, we propose an electrochemical Fenton treatment process that is catalyzed by the use of a commercially available MOF material to degrade TC. The efficiency of H2O2 generation in the IrO2/carbon felt setup is highlighted. However, electrochemical oxidation with H2O2 production (ECO-H2O2) alone is not enough to achieve complete TC removal, attributed to the formation of weak oxidant species. Incorporating Basolite®F300 in the heterogeneous electro-Fenton (HEF) process results in complete TC removal within 40 min, showcasing its efficacy. Additionally, this study explores the effect of varying MOF concentrations, indicating optimal removal rates at 100 mg L−1 due to a balance of kinetics and limitation of active sites of the catalysts. Furthermore, the impact of the applied current on TC removal is investigated, revealing a proportional relationship between current and removal rates. The analysis of energy efficiency emphasizes 50 mA as the optimal current, however, balancing removal efficiency with electrical energy consumption. This work highlights the potential of Basolite®F300 as an effective catalyst in the HEF process for pollutant abatement, providing valuable insights into optimizing electrified water treatment applications with MOF nanomaterials to treat organic pollutants. Full article
(This article belongs to the Section Environmental Catalysis)
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12 pages, 2896 KiB  
Article
A Systematic Study of the Temperature Dependence of the Dielectric Function of GaSe Uniaxial Crystals from 27 to 300 K
by Long V. Le, Tien-Thanh Nguyen, Xuan Au Nguyen, Do Duc Cuong, Thi Huong Nguyen, Van Quang Nguyen, Sunglae Cho, Young Dong Kim and Tae Jung Kim
Nanomaterials 2024, 14(10), 839; https://doi.org/10.3390/nano14100839 (registering DOI) - 10 May 2024
Abstract
We report the temperature dependences of the dielectric function ε = ε1 + iε2 and critical point (CP) energies of the uniaxial crystal GaSe in the spectral energy region from 0.74 to 6.42 eV and at temperatures from 27 to [...] Read more.
We report the temperature dependences of the dielectric function ε = ε1 + iε2 and critical point (CP) energies of the uniaxial crystal GaSe in the spectral energy region from 0.74 to 6.42 eV and at temperatures from 27 to 300 K using spectroscopic ellipsometry. The fundamental bandgap and strong exciton effect near 2.1 eV are detected only in the c-direction, which is perpendicular to the cleavage plane of the crystal. The temperature dependences of the CP energies were determined by fitting the data to the phenomenological expression that incorporates the Bose–Einstein statistical factor and the temperature coefficient to describe the electron–phonon interaction. To determine the origin of this anisotropy, we perform first-principles calculations using the mBJ method for bandgap correction. The results clearly demonstrate that the anisotropic dielectric characteristics can be directly attributed to the inherent anisotropy of p orbitals. More specifically, this prominent excitonic feature and fundamental bandgap are derived from the band-to-band transition between s and pz orbitals at the Γ-point. Full article
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10 pages, 7074 KiB  
Article
Creation of a Corneal Flap for Laser In Situ Keratomileusis Using a Three-Dimensional Femtosecond Laser Cut: Clinical and Optical Coherence Tomography Features
by Antonio Leccisotti, Stefania V. Fields, Giuseppe De Bartolo, Christian Crudale and Matteo Posarelli
Optics 2024, 5(2), 267-276; https://doi.org/10.3390/opt5020019 (registering DOI) - 10 May 2024
Abstract
Laser in situ keratomileusis (LASIK) is the most frequently used technique for the surgical correction of refractive errors on the cornea. It entails the creation of a superficial hinged corneal flap using a femtosecond laser, ablation of the underlying stromal bed using an [...] Read more.
Laser in situ keratomileusis (LASIK) is the most frequently used technique for the surgical correction of refractive errors on the cornea. It entails the creation of a superficial hinged corneal flap using a femtosecond laser, ablation of the underlying stromal bed using an excimer laser, and repositioning of the flap. A corneal flap with an angled side cut reduces the risk of flap dislocation and infiltration of epithelial cells and confers unique biomechanical properties to the cornea. A new laser software creating three-dimensional (3D) flaps using a custom angle side cut was retrospectively evaluated, comparing optical coherence tomography 3D (with intended 90° side cut) and 2D flaps (with tapered side cuts) as well as respective intra- and early postoperative complications. Four hundred consecutive eyes were included, two hundred for each group. In the 3D group, the mean edge angle was 92°, and the procedure was on average 5.2 s slower (p = 0). Non-visually significant flap folds were found in thirteen eyes of the 2D group and in seven eyes of the 3D group (p = 0.17). In conclusion, the creation of a LASIK flap using a 3D femtosecond laser cut, although slightly slower, was safe and effective. The side cut angle was predictable and accurate. Full article
(This article belongs to the Section Biomedical Optics)
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17 pages, 15115 KiB  
Article
Emerging Trends and Challenges in Pink Hydrogen Research
by Pablo Fernández-Arias, Álvaro Antón-Sancho, Georgios Lampropoulos and Diego Vergara
Energies 2024, 17(10), 2291; https://doi.org/10.3390/en17102291 (registering DOI) - 10 May 2024
Abstract
Pink hydrogen is the name given to the technological variant of hydrogen generation from nuclear energy. This technology aims to address the environmental challenges associated with conventional hydrogen production, positioning itself as a more sustainable and eco-efficient alternative, while offering a viable alternative [...] Read more.
Pink hydrogen is the name given to the technological variant of hydrogen generation from nuclear energy. This technology aims to address the environmental challenges associated with conventional hydrogen production, positioning itself as a more sustainable and eco-efficient alternative, while offering a viable alternative to nuclear power as a source of electricity generation. The present research analyzes the landscape of pink hydrogen research, an innovative strand of renewable energy research. The methodology included a comprehensive search of scientific databases, which revealed a steady increase in the number of publications in recent years. This increase suggests a growing interest in and recognition of the importance of pink hydrogen in the transition to cleaner and more sustainable energy sources. The results reflect the immaturity of this technology, where there is no single international strategy and where there is some diversity of research topic areas, as well as a small number of relevant topics. It is estimated that the future development of Gen IV nuclear reactors, as well as Small Modular Reactor (SMR) designs, will also favor the implementation of pink hydrogen. Full article
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17 pages, 4141 KiB  
Article
NMR Precision Metabolomics: Dynamic Peak Sum Thresholding and Navigators for Highly Standardized and Reproducible Metabolite Profiling of Clinical Urine Samples
by Alessia Trimigno, Nicole R. Holderman, Chen Dong, Kari D. Boardman, Jifang Zhao and Elizabeth M. O’Day
Metabolites 2024, 14(5), 275; https://doi.org/10.3390/metabo14050275 (registering DOI) - 10 May 2024
Abstract
Metabolomics, especially urine-based studies, offers incredible promise for the discovery and development of clinically impactful biomarkers. However, due to the unique challenges of urine, a highly precise and reproducible workflow for NMR-based urine metabolomics is lacking. Using 1D and 2D non-uniform sampled (NUS) [...] Read more.
Metabolomics, especially urine-based studies, offers incredible promise for the discovery and development of clinically impactful biomarkers. However, due to the unique challenges of urine, a highly precise and reproducible workflow for NMR-based urine metabolomics is lacking. Using 1D and 2D non-uniform sampled (NUS) 1H-13C NMR spectroscopy, we systematically explored how changes in hydration or specific gravity (SG) and pH can impact biomarker discovery. Further, we examined additional sources of error in metabolomics studies and identified Navigator molecules that could monitor for those biases. Adjustment of SG to 1.002–1.02 coupled with a dynamic sum-based peak thresholding eliminates false positives associated with urine hydration and reduces variation in chemical shift. We identified Navigator molecules that can effectively monitor for inconsistencies in sample processing, SG, protein contamination, and pH. The workflow described provides quality assurance and quality control tools to generate high-quality urine metabolomics data, which is the first step in biomarker discovery. Full article
(This article belongs to the Section Metabolomic Profiling Technology)
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26 pages, 4865 KiB  
Article
The Attention-Based Autoencoder for Network Traffic Classification with Interpretable Feature Representation
by Jun Cui, Longkun Bai, Xiaofeng Zhang, Zhigui Lin and Qi Liu
Symmetry 2024, 16(5), 589; https://doi.org/10.3390/sym16050589 (registering DOI) - 10 May 2024
Abstract
Network traffic classification is crucial for identifying network applications and defending against network threats. Traditional traffic classification approaches struggle to extract structural features and suffer from poor interpretability of feature representations. The high symmetry between network traffic classification and its interpretable feature representation [...] Read more.
Network traffic classification is crucial for identifying network applications and defending against network threats. Traditional traffic classification approaches struggle to extract structural features and suffer from poor interpretability of feature representations. The high symmetry between network traffic classification and its interpretable feature representation is vital for network traffic analysis. To address these issues, this paper proposes a traffic classification and feature representation model named the attention mechanism autoencoder (AMAE). The AMAE model extracts the global spatial structural features of network traffic through attention mechanisms and employs an autoencoder to extract local structural features and perform dimensionality reduction. This process maps different network traffic features into one-dimensional coordinate systems in the form of spectra, termed FlowSpectrum. The spectra of different network traffic represent different intervals in the coordinate system. This paper tests the interpretability and classification performance of network traffic features of the AMAE model using the ISCX-VPN2016 dataset. Experimental results demonstrate that by analyzing the overall distribution of attention weights and local weight values of network traffic, the model effectively explains the differences in the spectral representation intervals of different types of network traffic. Furthermore, our approach achieves the highest classification accuracy of up to 100% for non-VPN-encrypted traffic and 99.69% for VPN-encrypted traffic, surpassing existing traffic classification schemes. Full article
(This article belongs to the Section Computer)
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12 pages, 2744 KiB  
Article
Effects of Intracerebral Aminophylline Dosing on Catalepsy and Gait in an Animal Model of Parkinson’s Disease
by Érica de Moraes Santos Corrêa, Gustavo Christofoletti and Albert Schiaveto de Souza
Int. J. Mol. Sci. 2024, 25(10), 5191; https://doi.org/10.3390/ijms25105191 (registering DOI) - 10 May 2024
Abstract
Parkinson’s disease (PD) is a progressive disorder characterized by the apoptosis of dopaminergic neurons in the basal ganglia. This study explored the potential effects of aminophylline, a non-selective adenosine A1 and A2A receptor antagonist, on catalepsy and gait in a haloperidol-induced [...] Read more.
Parkinson’s disease (PD) is a progressive disorder characterized by the apoptosis of dopaminergic neurons in the basal ganglia. This study explored the potential effects of aminophylline, a non-selective adenosine A1 and A2A receptor antagonist, on catalepsy and gait in a haloperidol-induced PD model. Sixty adult male Swiss mice were surgically implanted with guide cannulas that targeted the basal ganglia. After seven days, the mice received intraperitoneal injections of either haloperidol (experimental group, PD-induced model) or saline solution (control group, non-PD-induced model), followed by intracerebral infusions of aminophylline. The assessments included catalepsy testing on the bar and gait analysis using the Open Field Maze. A two-way repeated-measures analysis of variance (ANOVA), followed by Tukey’s post hoc tests, was employed to evaluate the impact of groups (experimental × control), aminophylline (60 nM × 120 nM × saline/placebo), and interactions. Significance was set at 5%. The results revealed that the systemic administration of haloperidol in the experimental group increased catalepsy and dysfunction of gait that paralleled the observations in PD. Co-treatment with aminophylline at 60 nM and 120 nM reversed catalepsy in the experimental group but did not restore the normal gait pattern of the animals. In the non-PD induced group, which did not present any signs of catalepsy or motor dysfunctions, the intracerebral dose of aminophylline did not exert any interference on reaction time for catalepsy but increased walking distance in the Open Field Maze. Considering the results, this study highlights important adenosine interactions in the basal ganglia of animals with and without signs comparable to those of PD. These findings offer valuable insights into the neurobiology of PD and emphasize the importance of exploring novel therapeutic strategies to improve patient’s catalepsy and gait. Full article
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16 pages, 7842 KiB  
Article
Impact of Relational Coordination on Job Satisfaction and Willingness to Stay: A Cross-Sectional Survey of Healthcare Professionals in South Tyrol, Italy
by Christian J. Wiedermann, Verena Barbieri, Adolf Engl and Giuliano Piccoliori
Behav. Sci. 2024, 14(5), 397; https://doi.org/10.3390/bs14050397 (registering DOI) - 10 May 2024
Abstract
Job satisfaction and willingness to stay are critical for workforce stability in a challenging healthcare environment. This study examined how relational coordination, a key factor in teamwork and communication, influences outcomes among healthcare professionals in a bilingual, culturally mixed region of Italy. This [...] Read more.
Job satisfaction and willingness to stay are critical for workforce stability in a challenging healthcare environment. This study examined how relational coordination, a key factor in teamwork and communication, influences outcomes among healthcare professionals in a bilingual, culturally mixed region of Italy. This cross-sectional survey included general practitioners, hospital physicians, nurses, and administrators from the South Tyrol Health Service, using the ‘Relational Coordination Survey’ and additional measures of job satisfaction and willingness to stay. The analytical methods used included descriptive statistics, correlations, and regression analyses. This study applied path analysis, including mediation and moderation techniques, to investigate the roles of relational coordination and job satisfaction in influencing the willingness to stay. It employs Conditional Process Analysis with the PROCESS macro in SPSS, focusing on models for moderated mediation analysis. The results indicated a critical influence of relational coordination on both job satisfaction and willingness to stay among the 525 healthcare professionals. Job satisfaction varied by health district and years of service, with midcareer professionals being the least satisfied. The findings highlight the central role of relational coordination in job satisfaction and willingness to stay and confirm that low job satisfaction increases turnover intentions. Relational coordination directly enhanced job satisfaction and willingness to stay, while also serving as a mediating factor that amplifies the impact of job satisfaction on retention intentions. This study reinforces the need for strong teamwork and communication to stabilize the healthcare workforce. Targeted interventions aimed at improving relational coordination could significantly enhance job satisfaction and retention among healthcare professionals, particularly in culturally diverse settings such as South Tyrol. Full article
(This article belongs to the Special Issue Emerging Outlooks on Relationships in the Workplace)
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16 pages, 249 KiB  
Review
Intake Biomarkers for Nutrition and Health: Review and Discussion of Methodology Issues
by Ross L. Prentice
Metabolites 2024, 14(5), 276; https://doi.org/10.3390/metabo14050276 (registering DOI) - 10 May 2024
Abstract
Metabolomics profiles from blood, urine, or other body fluids have the potential to assess intakes of foods and nutrients objectively, thereby strengthening nutritional epidemiology research. Metabolomics platforms may include targeted components that estimate the relative concentrations for individual metabolites in a predetermined set, [...] Read more.
Metabolomics profiles from blood, urine, or other body fluids have the potential to assess intakes of foods and nutrients objectively, thereby strengthening nutritional epidemiology research. Metabolomics platforms may include targeted components that estimate the relative concentrations for individual metabolites in a predetermined set, or global components, typically involving mass spectrometry, that estimate relative concentrations more broadly. While a specific metabolite concentration usually correlates with the intake of a single food or food group, multiple metabolites may be correlated with the intake of certain foods or with specific nutrient intakes, each of which may be expressed in absolute terms or relative to total energy intake. Here, I briefly review the progress over the past 20 years on the development and application intake biomarkers for foods/food groups, nutrients, and dietary patterns, primarily by drawing from several recent reviews. In doing so, I emphasize the criteria and study designs for candidate biomarker identification, biomarker validation, and intake biomarker application. The use of intake biomarkers for diet and chronic disease association studies is still infrequent in nutritional epidemiology research. My comments here will derive primarily from our research group’s recent contributions to the Women’s Health Initiative cohorts. I will complete the contribution by describing some opportunities to build on the collective 20 years of effort, including opportunities related to the metabolomics profiling of blood and urine specimens from human feeding studies that approximate habitual diets. Full article
(This article belongs to the Special Issue Metabolomics-Based Biomarkers for Nutrition and Health)
11 pages, 2566 KiB  
Communication
The Heterogeneous Habitat of Taiga Forests Changes the Soil Microbial Functional Diversity
by Tian Zhou, Song Wu, Mingliang Gao and Libin Yang
Microorganisms 2024, 12(5), 959; https://doi.org/10.3390/microorganisms12050959 (registering DOI) - 10 May 2024
Abstract
The soil contains abundant and diverse microorganisms, which interrelate closely with the aboveground vegetation and impact the structure and function of the forest ecosystem. To explore the effect of vegetation diversity on soil microbial functional diversity in taiga forests, we selected significantly different [...] Read more.
The soil contains abundant and diverse microorganisms, which interrelate closely with the aboveground vegetation and impact the structure and function of the forest ecosystem. To explore the effect of vegetation diversity on soil microbial functional diversity in taiga forests, we selected significantly different important values of Larix gmelinii as experimental grouping treatments based on plant investigation from fixed plots in Da Xing’anling Mountains. Following that, we collected soil samples and applied the Biolog-ECO microplate method to investigate differences in carbon source utilization, features of functional diversity in soil microorganisms, and factors influencing them in taiga forests. The AWCD decreased as the important value of Larix gmelinii grew, and soil microorganisms preferred carboxylic acids, amino acids, and carbohydrates over polymers, phenolic acids, and amines. The Shannon and McIntosh indexes decreased significantly with the increase of the important value of Larix gmelinii (p < 0.05) and were positively correlated with soil SOC, MBC, C/N, and pH, but negatively with TN, AP, and AN. Redundancy analysis revealed significant effects on soil microbial functional diversity from soil C/N, SOC, AP, MBC, TN, pH, AN, and WC. To sum up, heterogeneous habitats of taiga forests with different important values altered soil microbial functional diversity. Full article
(This article belongs to the Section Environmental Microbiology)
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15 pages, 338 KiB  
Article
An Autoethnography on Intergenerational Relationships and Transnational Care for Older Parents
by Weiguo Zhang
Genealogy 2024, 8(2), 56; https://doi.org/10.3390/genealogy8020056 (registering DOI) - 10 May 2024
Abstract
I employ autoethnography to undertake a broader scholarly inquiry on intergenerational relationships and transnational care shaped by global migration and aging. Specifically, I reflect on the dynamics of my relationship with my mother, beginning with my departure from my home and spanning a [...] Read more.
I employ autoethnography to undertake a broader scholarly inquiry on intergenerational relationships and transnational care shaped by global migration and aging. Specifically, I reflect on the dynamics of my relationship with my mother, beginning with my departure from my home and spanning a period of 40 years, 8 in China and 34 outside China. In doing so, I contemplate theoretical models of intergenerational solidarity, ambivalence, and role ambiguity. I also challenge cultural assumptions of filial piety. The geographical distance, passage of time, and acculturation process have profoundly influenced my perception of filial piety, which differs markedly from my mother’s. However, this divergence in consensual solidarity—marked by variations in attitudes, beliefs, and values—does not translate into weakened affectual solidarity, characterized by positive sentiments and emotions. Furthermore, aided by advancements in transportation and social media technology, I have been able to extend crucial emotional and some “instrumental” care to my mother, along with financial support if needed, despite limited hands-on care. Nevertheless, I must negotiate my care for my mother and navigate a delicate balance in coordinating my care efforts with those of my non-migrant siblings. Full article
(This article belongs to the Special Issue Challenges in Multicultural Marriages and Families)
15 pages, 1397 KiB  
Article
Phosphate-Solubilizing Microorganisms Stimulate Physiological Responses of Perennial Ryegrass to Phosphorus Deficiency with Assistance of Straw Compost
by Chunkai Li, Zhaojuan Zheng, Yexin Zhao, Hongxin Wang, Peng Li, Jingjing Xu, Jiaguo Jiao, Li Xu, Feng Hu and Huixin Li
Agronomy 2024, 14(5), 1008; https://doi.org/10.3390/agronomy14051008 (registering DOI) - 10 May 2024
Abstract
Biofertilizers with phosphate-solubilizing microorganism (PSM) inoculations have been suggested to diminish the limitation of phosphorus (P) deficiency in plants. However, their applications in agriculture are restricted due to the inconstant effects of various PSMs. Proper carriers for the inoculations may overcome this shortcoming [...] Read more.
Biofertilizers with phosphate-solubilizing microorganism (PSM) inoculations have been suggested to diminish the limitation of phosphorus (P) deficiency in plants. However, their applications in agriculture are restricted due to the inconstant effects of various PSMs. Proper carriers for the inoculations may overcome this shortcoming and improve PSMs’ effectiveness. The objective of this study was to investigate whether straw compost, a type of organic material, can act as a carrier for improving the efficiencies of phosphate-solubilizing bacteria and fungi named Acinetobacter sp. and Aspergillus niger, respectively, in soils. We monitored the growth and cellular physiological responses of one type of model plants, named perennial ryegrass (Lolium perenne L.), under four soil treatments, including non-fertilization, PSM inoculation alone, straw compost addition alone, and the combined applications of both PSMs and straw compost. We found the combined treatments significantly improved the growth by 14.7% for shoot height and 79.7% for shoot weight, respectively, on average. P and potassium (K) uptakes of ryegrass were also increased by 102.5% and 65.3%, respectively, after the application of both PSMs and straw compost. Furthermore, physiological properties, such as photosynthetic efficiency and P-transportation capacity, of ryegrass were also significantly improved under combined treatments when compared to other treatments, regardless of the types of PSM included. The piecewise structural equation model further indicated that PSM inoculation and straw compost input are synergistically contributing to the nutrient uptake of ryegrass through many direct and indirect ways. We propose that straw compost is a good carrier material for PSMs’ survival and would improve their plant growth promotion ability in soil. Our results provide valuable insights into the exploitation and utilization of P-biofertilizers in agriculture. Full article
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16 pages, 2071 KiB  
Article
Preparation and Biological Activity Studies of Octenyl Succinic Anhydride Starch-Based Emulsions Containing Natural Essential Oils and Their Components
by Vesta Navikaite-Snipaitiene, Kamile Spirikavice, Jurate Siugzdaite, Egle Beatrice Grigonyte and Ramune Rutkaite
Appl. Sci. 2024, 14(10), 4050; https://doi.org/10.3390/app14104050 (registering DOI) - 10 May 2024
Abstract
In this study, clove essential oil (CL), eugenol (EU), and cinnamaldehyde (CI) were immobilized in starch sodium octenyl succinate (SSO) using an emulsification method. The main characteristics, stability, and biological properties of the prepared emulsions were established. Particle size analyses using dynamic light [...] Read more.
In this study, clove essential oil (CL), eugenol (EU), and cinnamaldehyde (CI) were immobilized in starch sodium octenyl succinate (SSO) using an emulsification method. The main characteristics, stability, and biological properties of the prepared emulsions were established. Particle size analyses using dynamic light scattering showed that the smaller droplets were characteristic of emulsions containing CI (205–218 nm) and EU (181–236 nm), while the largest droplets were determined for CL emulsions (293–348 nm). Moreover, the highest antioxidant activity was determined for CL (79–83%) and EU (80–88%) emulsions, while CI emulsions showed the greatest antibacterial activity. The obtained emulsions were applied to the paper sheets and the bioactive properties of coated paper were studied. Evaluation of antioxidant properties revealed that high antioxidant activity reaching 76–92% and 87–91% was characteristic of coatings containing CL and EU, respectively. Meanwhile, coatings containing CI showed quite low antioxidant activity (4–9%) but demonstrated the greatest antimicrobial effect on Gram-negative and Gram-positive bacteria as well as yeasts. Hence, CL and EU emulsions could be used as effective natural antioxidants, whereas CI emulsions could be applied as an antimicrobial agent on cellulose-based substrates for a wide range of human health protection applications. Full article
(This article belongs to the Special Issue The Role of Bioactive Natural Products in Health and Disease)
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15 pages, 4116 KiB  
Article
Friction and Wear of Hard Yet Tough TiN Coatings Deposited Using High-Power Impulse Magnetron Sputtering
by Qian Zhou, Yixiang Ou, Feiqiang Li, Changyu Ou, Wenbin Xue, Bin Liao, Qingsong Hua, Yunfei Xu, Jidong Cao and Guanshu Qu
Coatings 2024, 14(5), 598; https://doi.org/10.3390/coatings14050598 (registering DOI) - 10 May 2024
Abstract
The friction and wear response of hard coatings is complex, which largely depends on a good combination of hardness and toughness, and their service life is difficult to predict. Hence, in this work, hard yet tough TiN coatings were deposited using high-power impulse [...] Read more.
The friction and wear response of hard coatings is complex, which largely depends on a good combination of hardness and toughness, and their service life is difficult to predict. Hence, in this work, hard yet tough TiN coatings were deposited using high-power impulse magnetron sputtering at 5–10 kW. With increasing sputtering power, the coatings showed a transition in crystal texture from (200) to (111), along with a refinement in microstructure, leading to an improvement in hardness (H) of 29.8–31.2 GPa and an effective Young’s modulus (E*) of 310–365 GPa. The hard yet tough TiN coatings deposited at 6.5 kW exhibited the highest H/E* and H3/E*2 ratios of 0.097 and 0.29, respectively, as well as the highest fracture toughness of 2.1 MPa·m1/2 and elastic recovery of 42.5%. Accordingly, the coatings possessed an enhanced adhesion and cohesion, in terms of micro-scratch critical load (LC3 = 19.67 N) and HF Rockwell HF1 level. The friction and wear response of hard yet tough TiN coatings under the normal load of 1–10 N were investigated to explore their durability and predict their critical load up to failure. Wear mechanisms changed from oxidative to severe abrasive wear, with load increasing from 1 to 10 N. At 2–5 N, a combination of oxidative and abrasive wear was observed. The coatings maintained their integrity up to the critical load of 9.4 N before failure event, with a maximum wear track depth of 1.8 μm, indicating their durability under the loading conditions. Full article
(This article belongs to the Section Corrosion, Wear and Erosion)
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