The 2023 MDPI Annual Report has
been released!
 
14 pages, 3815 KiB  
Article
Human-Induced Range Expansions Result in a Recent Hybrid Zone between Sister Species of Ducks
by Philip Lavretsky, Kevin J. Kraai, David Butler, James Morel, Jay A. VonBank, Joseph R. Marty, Vergie M. Musni and Daniel P. Collins
Genes 2024, 15(6), 651; https://doi.org/10.3390/genes15060651 (registering DOI) - 21 May 2024
Abstract
Landscapes are consistently under pressure from human-induced ecological change, often resulting in shifting species distributions. For some species, changing the geographical breadth of their niche space results in matching range shifts to regions other than those in which they are formally found. In [...] Read more.
Landscapes are consistently under pressure from human-induced ecological change, often resulting in shifting species distributions. For some species, changing the geographical breadth of their niche space results in matching range shifts to regions other than those in which they are formally found. In this study, we employ a population genomics approach to assess potential conservation issues arising from purported range expansions into the south Texas Brush Country of two sister species of ducks: mottled (Anas fulvigula) and Mexican (Anas diazi) ducks. Specifically, despite being non-migratory, both species are increasingly being recorded outside their formal ranges, with the northeastward and westward expansions of Mexican and mottled ducks, respectively, perhaps resulting in secondary contact today. We assessed genetic ancestry using thousands of autosomal loci across the ranges of both species, as well as sampled Mexican- and mottled-like ducks from across overlapping regions of south Texas. First, we confirm that both species are indeed expanding their ranges, with genetically pure Western Gulf Coast mottled ducks confirmed as far west as La Salle county, Texas, while Mexican ducks recorded across Texas counties near the USA–Mexico border. Importantly, the first confirmed Mexican × mottled duck hybrids were found in between these regions, which likely represents a recently established contact zone that is, on average, ~100 km wide. We posit that climate- and land use-associated changes, including coastal habitat degradation coupled with increases in artificial habitats in the interior regions of Texas, are facilitating these range expansions. Consequently, continued monitoring of this recent contact event can serve to understand species’ responses in the Anthropocene, but it can also be used to revise operational survey areas for mottled ducks. Full article
(This article belongs to the Special Issue Genomics of Evolution and Adaptation in Animals)
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25 pages, 5345 KiB  
Article
Energy-Efficient and Highly Reliable Geographic Routing Based on Link Detection and Node Collaborative Scheduling in WSN
by Minghua Wang, Ziyan Zhu, Yan Wang and Shujing Xie
Sensors 2024, 24(11), 3263; https://doi.org/10.3390/s24113263 (registering DOI) - 21 May 2024
Abstract
Energy efficiency and data reliability are important indicators to measure network performance in wireless sensor networks. In existing research schemes of routing protocols, the impact of node coverage on the network is often ignored, and the possibility that multiple sensor nodes may sense [...] Read more.
Energy efficiency and data reliability are important indicators to measure network performance in wireless sensor networks. In existing research schemes of routing protocols, the impact of node coverage on the network is often ignored, and the possibility that multiple sensor nodes may sense the same spatial point is not taken into account, which results in a waste of network resources, especially in large-scale networks. Apart from that, the blindness of geographic routing in data transmission has been troubling researchers, which means that the nodes are unable to determine the validity of data transmission. In order to solve the above problems, this paper innovatively combines the routing protocol with the coverage control technique and proposes the node collaborative scheduling algorithm, which fully considers the correlation characteristics between sensor nodes to reduce the number of active working nodes and the number of packets generated, to further reduce energy consumption and network delay and improve packet delivery rate. In order to solve the problem of unreliability of geographic routing, a highly reliable link detection and repair scheme is proposed to check the communication link status and repair the invalid link, which can greatly improve the packet delivery rate and throughput of the network, and has good robustness. A large number of experiments demonstrate the effectiveness and superiority of our proposed scheme and algorithm. Full article
(This article belongs to the Section Sensor Networks)
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14 pages, 679 KiB  
Article
Replacing Fishmeal and Fish Oil with Complex Protein and Canola Oil: Effect on Organoleptic and Nutritional Quality of Triploid Rainbow Trout (Oncorhynchus mykiss)
by Yongna Song, Guoliang Sun, Fulei Wei, Zezhong Wu, Haining Tian, Yuqiong Meng and Rui Ma
Foods 2024, 13(11), 1591; https://doi.org/10.3390/foods13111591 (registering DOI) - 21 May 2024
Abstract
A twelve-week feeding experiment was undertaken to explore the impact of substituting dietary fish meal (FM) and fish oil (FO) with complex protein (CP) and canola oil (CO) in the diet of triploid rainbow trout on the quality of their fillets. The control [...] Read more.
A twelve-week feeding experiment was undertaken to explore the impact of substituting dietary fish meal (FM) and fish oil (FO) with complex protein (CP) and canola oil (CO) in the diet of triploid rainbow trout on the quality of their fillets. The control diet (F100) contained FM (60%) and FO (18.6%) as the main protein and lipid sources. Based on this, 50% and 100% of FM and FO were substituted by CP and CO and they were named as F50 and F0, respectively. The results showed that there were no significant differences in the specific growth rates, condition factors, gutted yields, fillet yields and yellowness values as the substitution levels increased (p > 0.05). The F50 treatment obtained the highest values of fillet springiness and chewiness, improved the umami and bitter taste of the fillets by increasing the contents of inosine-5′-monophosphate and histidine, and increased lipid, protein, C18: 1n-9 and C18: 2n-6 contents (p < 0.05). The F0 treatment obtained the highest values of fillet hardness and pH, attenuated the sweet taste of the fillets by decreasing the content of glycine, and decreased the contents of EPA and DHA (p < 0.05). Both F50 and F0 treatments could increase the redness value, decrease the lightness and hue values of fillets, and increase the odor intensity, resulting in the typical fillet odors of green, fatty, orange and fishy (p < 0.05). In general, 50% and 100% of FM and FO substitution did not affect the growth of trout, but it did affect quality. Compared to the F100 treatment, the fillet quality of the F0 treatment was similar to the F50 treatment and could improve the appearance and odor intensity of the fillets. However, the difference was that the F50 treatment increased the springiness, umami, bitterness and lipid nutritional value of the fillets, but the F0 treatment increased the hardness, decreased the sweetness, and decreased the lipid, EPA and DHA contents of the fillets. Full article
(This article belongs to the Section Foods of Marine Origin)
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16 pages, 533 KiB  
Article
Zooming into the Complex Dynamics of Electrodermal Activity Recorded during Emotional Stimuli: A Multiscale Approach
by Laura Lavezzo, Andrea Gargano, Enzo Pasquale Scilingo and Mimma Nardelli
Bioengineering 2024, 11(6), 520; https://doi.org/10.3390/bioengineering11060520 (registering DOI) - 21 May 2024
Abstract
Physiological phenomena exhibit complex behaviours arising at multiple time scales. To investigate them, techniques derived from chaos theory were applied to physiological signals, providing promising results in distinguishing between healthy and pathological states. Fractal-like properties of electrodermal activity (EDA), a well-validated tool for [...] Read more.
Physiological phenomena exhibit complex behaviours arising at multiple time scales. To investigate them, techniques derived from chaos theory were applied to physiological signals, providing promising results in distinguishing between healthy and pathological states. Fractal-like properties of electrodermal activity (EDA), a well-validated tool for monitoring the autonomic nervous system state, have been reported in previous literature. This study proposes the multiscale complexity index of electrodermal activity (MComEDA) to discern different autonomic responses based on EDA signals. This method builds upon our previously proposed algorithm, ComEDA, and it is empowered with a coarse-graining procedure to provide a view at multiple time scales of the EDA response. We tested MComEDA’s performance on the EDA signals of two publicly available datasets, i.e., the Continuously Annotated Signals of Emotion (CASE) dataset and the Affect, Personality and Mood Research on Individuals and Groups (AMIGOS) dataset, both containing physiological data recorded from healthy participants during the view of ultra-short emotional video clips. Our results highlighted that the values of MComEDA were significantly different (p-value < 0.05 after Wilcoxon signed rank test with Bonferroni’s correction) when comparing high- and low-arousal stimuli. Furthermore, MComEDA outperformed the single-scale approach in discriminating among different valence levels of high-arousal stimuli, e.g., showing significantly different values for scary and amusing stimuli (p-value = 0.024). These findings suggest that a multiscale approach to the nonlinear analysis of EDA signals can improve the information gathered on task-specific autonomic response, even when ultra-short time series are considered. Full article
(This article belongs to the Special Issue Advances in Multivariate and Multiscale Physiological Signal Analysis)
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15 pages, 6115 KiB  
Article
Profibrotic Inflammatory Cytokines and Growth Factors Are Predicted as the Key Targets of Uncaria gambir (Hunter) Roxb. in Keloids: An Epistatic and Molecular Simulation Approach
by Sri Suciati Ningsih, Fadilah Fadilah, Sri Widia A. Jusman, Rahimi Syaidah and Takashi Yashiro
Pharmaceuticals 2024, 17(6), 662; https://doi.org/10.3390/ph17060662 (registering DOI) - 21 May 2024
Abstract
Keloid is characterized as the fibrotic tissue resulting from the increase of fibroblast activity. Uncaria gambir (Hunter) Roxb. possesses bioactive compounds that have potential as antifibrotic agents, while the mechanism of action in keloid has not yet been elucidated. The aim of this [...] Read more.
Keloid is characterized as the fibrotic tissue resulting from the increase of fibroblast activity. Uncaria gambir (Hunter) Roxb. possesses bioactive compounds that have potential as antifibrotic agents, while the mechanism of action in keloid has not yet been elucidated. The aim of this study was to investigate the interaction of gambir bioactive compounds with keloid target proteins using an epistatic and molecular simulation approach. The known bioactive compounds of gambir targets and keloid-related protein targets were screened using databases. The network was constructed and analyzed to obtain the core protein targets. The targets were enriched to describe the Gene Ontology (GO) and pathway related to the proteins. Eleven targets were defined as the main targets of gambir bioactive compounds related to keloid disease. Gambiriin C, Isogambirine, and Procyanidin B1 were identified as the most promising compounds with the highest binding energy to transforming growth factor beta 1 (TGFβ1), AKT serine/threonine kinase 1 (AKT1), and matrix metallopeptidase 1 (MMP1) as the target proteins. GO enrichment and pathway analysis found that gambir bioactive compounds may act on keloid-related target proteins to regulate cell proliferation, migration, transcription, and signal transduction activity via profibrotic cytokine and growth factor signaling pathways. This study provides a reference for potential targets, compounds, and pathways to explain the mechanism of gambir against keloid. Full article
(This article belongs to the Special Issue Multi-Targeted Natural Products as Therapeutics)
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10 pages, 5017 KiB  
Review
Hybrid Management of Dysphagia Lusoria with Tevar Implantation and Bilateral Subclavian Arteries Debranching: A Review of the Literature and a Case Report
by Ovidiu Stiru, Mircea Robu, Pavel Platon, Serban-Ion Bubenek-Turconi, Vlad Anton Iliescu and Catalina Parasca
J. Pers. Med. 2024, 14(6), 547; https://doi.org/10.3390/jpm14060547 (registering DOI) - 21 May 2024
Abstract
Aberrant right subclavian artery (ARSA) causing dysphagia, the so-called “dysphagia lusoria”, is a frequent embryologic anomaly of the aortic arch. In symptomatic patients, studies report several management options including surgical, hybrid, and totally endovascular strategies. Hybrid techniques have the advantage of no chest [...] Read more.
Aberrant right subclavian artery (ARSA) causing dysphagia, the so-called “dysphagia lusoria”, is a frequent embryologic anomaly of the aortic arch. In symptomatic patients, studies report several management options including surgical, hybrid, and totally endovascular strategies. Hybrid techniques have the advantage of no chest opening with reduced morbidity, but the problem of the ARSA stump causing recurrent or persistent dysphagia remains challenging in some cases. We conducted a literature review on the management strategies of ARSA and presented the case of a 72-year-old female patient with ARSA and dysphagia managed with thoracic endovascular repair of the aorta (TEVAR) and bilateral carotid–subclavian artery bypass. This technique was chosen because of the severe calcifications at the level of ARSA origin that would make surgical ligation difficult, or if an occluder device not suitable. We think that a patient-tailored approach should be considered in cases of dysphagia lusoria, considering that a multitude of strategies are reported. Full article
(This article belongs to the Special Issue Current Updates on Cardiovascular Diseases in Emergency Medicine)
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24 pages, 5522 KiB  
Article
Characterization and Performance Evaluation of Digital Light Processing 3D Printed Functional Anion Exchange Membranes in Electrodialysis
by Xue Yu, Hongyi Yang, Xinran Lv, Xin Zhang, Veeriah Jegatheesan, Xiaobin Zhou and Yang Zhang
Processes 2024, 12(6), 1043; https://doi.org/10.3390/pr12061043 (registering DOI) - 21 May 2024
Abstract
With the rapid development of 3D printing technologies, more attention has been focused on using 3D printing for the fabrication of membranes. This study investigated the application of digital light processing (DLP) 3D printing combined with quaternization processes to develop dense anion exchange [...] Read more.
With the rapid development of 3D printing technologies, more attention has been focused on using 3D printing for the fabrication of membranes. This study investigated the application of digital light processing (DLP) 3D printing combined with quaternization processes to develop dense anion exchange membranes (AEMs) for electrodialysis (ED) separation of Cl and SO42− ions. It was discovered that at optimal curing times of 40 min, the membrane pore density was significantly enhanced and the surface roughness was reduced, and this resulted in an elevation of desalination rates (97.5–98.7%) and concentration rates (165.8–174.1%) of the ED process. Furthermore, increasing the number of printed layers improved the membranes’ overall polymerization and performance, with double-layer printing showing superior ion flux. This study also highlights the impact of the polyethylene glycol diacrylate (PEGDA) molecular weight on membrane efficacy, where PEGDA-700 outperformed PEGDA-400 in ion transport capabilities and desalination efficiency. Additionally, higher 4-vinylbenzyl chloride (VBC) content improved the quaternary ammonium group concentration and membrane conductivity, and hence elevated the ED performance. Under optimized conditions, DLP 3D printed membranes demonstrated exceptional selectivity of 24.0 for Cl/SO42− and a selective purity of 81.4%. With a current density of 400 A/m2, the current efficiency and energy consumption were in the range of 82.4% to 99.7%, and 17.2 to 25.4 kW‧h‧kg−1, respectively, showcasing the potential of advanced manufacturing techniques in creating efficient and functional ion exchange membranes. Full article
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14 pages, 7269 KiB  
Article
Synthesis of S-Allyl-O, O′-Dibutyl Phosphorodithioate and Its Adsorption Mechanism on Chalcopyrite Surface
by Luhuai Kong, Miaoqing Wang, Rongfang Wang, Hui Wang, Dayong Sun and Xingrong Zhang
Minerals 2024, 14(6), 528; https://doi.org/10.3390/min14060528 (registering DOI) - 21 May 2024
Abstract
The demand for non-ferrous copper metals has increased dramatically with the development of the global economy; accordingly, some refractory copper sulfide ores with low grade and their associated minerals are beginning to be utilized, making the flotation separation of copper concentrates exceptionally difficult, [...] Read more.
The demand for non-ferrous copper metals has increased dramatically with the development of the global economy; accordingly, some refractory copper sulfide ores with low grade and their associated minerals are beginning to be utilized, making the flotation separation of copper concentrates exceptionally difficult, especially the separation of chalcopyrite and pyrite. In this paper, S-allyl-O, O′-dibutyl phosphorodithioate (ADTP) was synthesized by a one-pot method and used as a chalcopyrite collector in the flotation separation of chalcopyrite and pyrite. Flotation experiments results have shown that ADTP exhibits better selectivity and greater collecting power for chalcopyrite under neutral or weak base conditions. The 95% recovery of chalcopyrite can be achieved at pH 8.0 and 8.0 mg/L ADTP. From the analysis results of the contact angle, the SEM-EDS spectrogram, and elemental mapping, it was found that ADTP adsorbed uniformly on a chalcopyrite surface and made a significant contribution to the hydrophobicity of the surface. Confirmed by FTIR and XPS analysis, ADTP was able to form P–S–Cu bonds on a chalcopyrite surface, proving that it was adsorbed on the chalcopyrite surface in the form of chemisorption. Full article
(This article belongs to the Special Issue Advances in Reagents for Mineral Processing, 2nd Edition)
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19 pages, 5114 KiB  
Review
Rotavirus NSP2: A Master Orchestrator of Early Viral Particle Assembly
by Sarah L. Nichols, Cyril Haller, Alexander Borodavka and Sarah M. Esstman
Viruses 2024, 16(6), 814; https://doi.org/10.3390/v16060814 (registering DOI) - 21 May 2024
Abstract
Rotaviruses (RVs) are 11-segmented, double-stranded (ds) RNA viruses and important causes of acute gastroenteritis in humans and other animal species. Early RV particle assembly is a multi-step process that includes the assortment, packaging and replication of the 11 genome segments in close connection [...] Read more.
Rotaviruses (RVs) are 11-segmented, double-stranded (ds) RNA viruses and important causes of acute gastroenteritis in humans and other animal species. Early RV particle assembly is a multi-step process that includes the assortment, packaging and replication of the 11 genome segments in close connection with capsid morphogenesis. This process occurs inside virally induced, cytosolic, membrane-less organelles called viroplasms. While many viral and cellular proteins play roles during early RV assembly, the octameric nonstructural protein 2 (NSP2) has emerged as a master orchestrator of this key stage of the viral replication cycle. NSP2 is critical for viroplasm biogenesis as well as for the selective RNA–RNA interactions that underpin the assortment of 11 viral genome segments. Moreover, NSP2’s associated enzymatic activities might serve to maintain nucleotide pools for use during viral genome replication, a process that is concurrent with early particle assembly. The goal of this review article is to summarize the available data about the structures, functions and interactions of RV NSP2 while also drawing attention to important unanswered questions in the field. Full article
(This article belongs to the Special Issue Rotaviruses and Rotavirus Vaccines)
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13 pages, 2450 KiB  
Article
Effect of a Chitosan-Based Packaging Material on the Domestic Storage of “Ready-to-Cook” Meat Products: Evaluation of Biogenic Amines Production, Phthalates Migration, and In Vitro Antimicrobic Activity’s Impact on Aspergillus Niger
by Antonella Maria Aresta, Nicoletta De Vietro, Giovanna Mancini and Carlo Zambonin
Separations 2024, 11(6), 159; https://doi.org/10.3390/separations11060159 (registering DOI) - 21 May 2024
Abstract
The consumption of “ready-to-cook” foods has been experiencing rapid expansion due to modern lifestyles, and they are often sold in economical multipacks. These foods necessitate packaging that maintains their quality for extended periods of time during home storage once the original packaging is [...] Read more.
The consumption of “ready-to-cook” foods has been experiencing rapid expansion due to modern lifestyles, and they are often sold in economical multipacks. These foods necessitate packaging that maintains their quality for extended periods of time during home storage once the original packaging is opened. This study evaluates a chitosan-based film derived from low- and high-molecular-weight (MW) chitosan in acetic acid without synthetic additives as an alternative packaging material for “ready-to-cook” beef burgers. The burgers were stored at 8 °C after being removed from their sales packaging. A commercial polyethylene (PE) film designed for food use, devoid of polyvinylchloride (PVC) and additives, served as the reference material. The production of six biogenic amines (BAs), indicative of putrefactive processes, was monitored. Additionally, the release of four phthalates (PAEs), unintentionally present in the packaging films, was assessed using solid-phase microextraction coupled with gas chromatography/mass spectrometry (SPME-GC/MS). Microbiological tests were conducted to investigate the antimicrobial efficacy of the packaging against Aspergillus Niger NRR3112. The results showed that the chitosan-based films, particularly those with low MW (LMW), exhibited superior meat preservation compared to the PE films. Furthermore, they released PAEs below legal limits and demonstrated the complete inhibition of fungal growth. These findings highlight the potential of chitosan-based packaging as a viable and effective option for extending the shelf-life and maintaining the quality of “ready-to-cook” meat products during domestic storage. Full article
(This article belongs to the Section Analysis of Food and Beverages)
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25 pages, 2847 KiB  
Article
Public Service Media in the Platform Era: The Cases of Britain, Denmark, and Greece
by Achilleas Karadimitriou and Stylianos Papathanassopoulos
Journal. Media 2024, 5(2), 646-670; https://doi.org/10.3390/journalmedia5020043 (registering DOI) - 21 May 2024
Abstract
Public service media (PSM) are grappling with structural shifts in the audio-visual sector, notably the shift of audiences towards over-the-top (OTT) or subscription video-on-demand (SVOD) services. They have also heavily invested in online platforms, adapting their policies to engage digital users on their [...] Read more.
Public service media (PSM) are grappling with structural shifts in the audio-visual sector, notably the shift of audiences towards over-the-top (OTT) or subscription video-on-demand (SVOD) services. They have also heavily invested in online platforms, adapting their policies to engage digital users on their video-on-demand (VOD) platforms. This paper assesses PSM policies in Britain, Denmark, and Greece, examining initiatives regarding adaptation to the digital era. It explores whether they implement new strategies to expand their digital reach. Data from policy documents and interviews with BBC, DR, and ERT leading executives inform the analysis. Findings showed varied responses among PSM organisations, influenced by market dynamics and the evolution of broadcasting traditions. Full article
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13 pages, 1913 KiB  
Article
Oleuropein, a Component of Extra Virgin Olive Oil, Improves Liver Steatosis and Lobular Inflammation by Lipopolysaccharides–TLR4 Axis Downregulation
by Leonardo Schirone, Diletta Overi, Guido Carpino, Roberto Carnevale, Elena De Falco, Cristina Nocella, Alessandra D’Amico, Simona Bartimoccia, Vittoria Cammisotto, Valentina Castellani, Giacomo Frati, Sebastiano Sciarretta, Eugenio Gaudio, Pasquale Pignatelli, Domenico Alvaro and Francesco Violi
Int. J. Mol. Sci. 2024, 25(11), 5580; https://doi.org/10.3390/ijms25115580 (registering DOI) - 21 May 2024
Abstract
Gut-dysbiosis-induced lipopolysaccharides (LPS) translocation into systemic circulation has been suggested to be implicated in nonalcoholic fatty liver disease (NAFLD) pathogenesis. This study aimed to assess if oleuropein (OLE), a component of extra virgin olive oil, lowers high-fat-diet (HFD)-induced endotoxemia and, eventually, liver steatosis. [...] Read more.
Gut-dysbiosis-induced lipopolysaccharides (LPS) translocation into systemic circulation has been suggested to be implicated in nonalcoholic fatty liver disease (NAFLD) pathogenesis. This study aimed to assess if oleuropein (OLE), a component of extra virgin olive oil, lowers high-fat-diet (HFD)-induced endotoxemia and, eventually, liver steatosis. An immunohistochemistry analysis of the intestine and liver was performed in (i) control mice (CTR; n = 15), (ii) high-fat-diet fed (HFD) mice (HFD; n = 16), and (iii) HFD mice treated with 6 µg/day of OLE for 30 days (HFD + OLE, n = 13). The HFD mice developed significant liver steatosis compared to the controls, an effect that was significantly reduced in the HFD + OLE-treated mice. The amount of hepatocyte LPS localization and the number of TLR4+ macrophages were higher in the HFD mice in the than controls and were lowered in the HFD + OLE-treated mice. The number of CD42b+ platelets was increased in the liver sinusoids of the HFD mice compared to the controls and decreased in the HFD + OLE-treated mice. Compared to the controls, the HFD-treated mice showed a high percentage of intestine PAS+ goblet cells, an increased length of intestinal crypts, LPS localization and TLR4+ expression, and occludin downregulation, an effect counteracted in the HFD + OLE-treated mice. The HFD-fed animals displayed increased systemic levels of LPS and zonulin, but they were reduced in the HFD + OLE-treated animals. It can be seen that OLE administration improves liver steatosis and inflammation in association with decreased LPS translocation into the systemic circulation, hepatocyte localization of LPS and TLR4 downregulation in HFD-induced mouse model of NAFLD. Full article
(This article belongs to the Special Issue Olive Oil and Derivatives for Human Health)
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25 pages, 3912 KiB  
Article
The Triterpenoid CDDO-Methyl Ester Reduces Tumor Burden, Reprograms the Immune Microenvironment, and Protects from Chemotherapy-Induced Toxicity in a Preclinical Mouse Model of Established Lung Cancer
by Jessica A. Moerland and Karen T. Liby
Antioxidants 2024, 13(6), 621; https://doi.org/10.3390/antiox13060621 (registering DOI) - 21 May 2024
Abstract
NRF2 activation protects epithelial cells from malignancy, but cancer cells can upregulate the pathway to promote survival. NRF2 activators including CDDO-Methyl ester (CDDO-Me) inhibit cancer in preclinical models, suggesting NRF2 activation in other cell types may promote anti-tumor activity. However, the immunomodulatory effects [...] Read more.
NRF2 activation protects epithelial cells from malignancy, but cancer cells can upregulate the pathway to promote survival. NRF2 activators including CDDO-Methyl ester (CDDO-Me) inhibit cancer in preclinical models, suggesting NRF2 activation in other cell types may promote anti-tumor activity. However, the immunomodulatory effects of NRF2 activation remain poorly understood in the context of cancer. To test CDDO-Me in a murine model of established lung cancer, tumor-bearing wildtype (WT) and Nrf2 knockout (KO) mice were treated with 50–100 mg CDDO-Me/kg diet, alone or combined with carboplatin/paclitaxel (C/P) for 8–12 weeks. CDDO-Me decreased tumor burden in an Nrf2-dependent manner. The combination of CDDO-Me plus C/P was significantly (p < 0.05) more effective than either drug alone, reducing tumor burden by 84% in WT mice. CDDO-Me reduced the histopathological grade of WT tumors, with a significantly (p < 0.05) higher proportion of low-grade tumors and a lower proportion of high-grade tumors. These changes were augmented by combination with C/P. CDDO-Me also protected WT mice from C/P-induced toxicity and improved macrophage and T cell phenotypes in WT mice, reducing the expression of CD206 and PD-L1 on macrophages, decreasing immunosuppressive FoxP3+ CD4+ T cells, and increasing activation of CD8+ T cells in a Nrf2-dependent manner. Full article
(This article belongs to the Special Issue Oxidative Stress and NRF2 in Health and Disease)
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16 pages, 7017 KiB  
Article
Rapid and Scalable Production of Functional SARS-CoV-2 Virus-like Particles (VLPs) by a Stable HEK293 Cell Pool
by Sitthiphol Puarattana-aroonkorn, Kannan Tharakaraman, Disapan Suriyawipada, Mathuros Ruchirawat, Mayuree Fuangthong, Ram Sasisekharan and Charlermchai Artpradit
Vaccines 2024, 12(6), 561; https://doi.org/10.3390/vaccines12060561 (registering DOI) - 21 May 2024
Abstract
At times of pandemics, such as the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, the situation demands rapid development and production timelines of safe and effective vaccines for delivering life-saving medications quickly to patients. Typical biologics production relies on using the lengthy [...] Read more.
At times of pandemics, such as the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, the situation demands rapid development and production timelines of safe and effective vaccines for delivering life-saving medications quickly to patients. Typical biologics production relies on using the lengthy and arduous approach of stable single-cell clones. Here, we used an alternative approach, a stable cell pool that takes only weeks to generate compared to a stable single-cell clone that needs several months to complete. We employed the membrane, envelope, and highly immunogenic spike proteins of SARS-CoV-2 to produce virus-like particles (VLPs) using the HEK293-F cell line as a host system with an economical transfection reagent. The cell pool showed the stability of protein expression for more than one month. We demonstrated that the production of SARS-CoV-2 VLPs using this cell pool was scalable up to a stirred-tank 2 L bioreactor in fed-batch mode. The purified VLPs were properly assembled, and their size was consistent with the authentic virus. Our particles were functional as they specifically entered the cell that naturally expresses ACE-2. Notably, this work reports a practical and cost-effective manufacturing platform for scalable SARS-CoV-2 VLPs production and chromatographic purification. Full article
(This article belongs to the Special Issue Host–Virus Interactions and Vaccine Development)
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22 pages, 2070 KiB  
Article
Improved Galaxy Morphology Classification with Convolutional Neural Networks
by Raul Urechiatu and Marc Frincu
Universe 2024, 10(6), 230; https://doi.org/10.3390/universe10060230 (registering DOI) - 21 May 2024
Abstract
The increased volume of images and galaxies surveyed by recent and upcoming projects consolidates the need for accurate and scalable automated AI-driven classification methods. This paper proposes a new algorithm based on a custom neural network architecture for classifying galaxies from deep space [...] Read more.
The increased volume of images and galaxies surveyed by recent and upcoming projects consolidates the need for accurate and scalable automated AI-driven classification methods. This paper proposes a new algorithm based on a custom neural network architecture for classifying galaxies from deep space surveys. The convolutional neural network (CNN) presented is trained using 10,000 galaxy images obtained from the Galaxy Zoo 2 dataset. It is designed to categorize galaxies into five distinct classes: completely round smooth, in-between smooth (falling between completely round and cigar-shaped), cigar-shaped smooth, edge-on, and spiral. The performance of the proposed CNN is assessed using a set of metrics such as accuracy, precision, recall, F1 score, and area under the curve. We compare our solution with well-known architectures like ResNet-50, DenseNet, EfficientNet, Inception, MobileNet, and one proposed model for galaxy classification found in the recent literature. The results show an accuracy rate of 96.83%, outperforming existing algorithms. Full article
(This article belongs to the Section Galaxies and Clusters)
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16 pages, 505 KiB  
Article
Does the Workforce and Sustainability Reporting Strengthen the Relationship between Gender Diversity and Sustainability Performance Reporting?
by Albertina Paula Monteiro, Catarina Cepêda and Amélia Ferreira da Silva
Adm. Sci. 2024, 14(6), 105; https://doi.org/10.3390/admsci14060105 (registering DOI) - 21 May 2024
Abstract
The relevance of gender diversity and environmental, social, and governance (ESG) performance reporting is critical to corporate sustainability. This study aims to analyze the impact of gender diversity on ESG performance reporting and analyze the mediating effect of the workforce and sustainability reports, [...] Read more.
The relevance of gender diversity and environmental, social, and governance (ESG) performance reporting is critical to corporate sustainability. This study aims to analyze the impact of gender diversity on ESG performance reporting and analyze the mediating effect of the workforce and sustainability reports, considering that these variables are crucial for ESG performance reporting. To achieve the objective, an empirical analysis was conducted with 207 European-listed companies belonging to the healthcare sector for the economic years 2017–2021. Our results prove that board gender diversity influences ESG performance reporting. In addition, this research shows that the workforce and sustainability reports have a positive impact on ESG performance reporting. This study does not show that the workforce and sustainability reports act as mediating variables in the relationship between gender diversity and ESG information transparency, but its inclusiveness has a significant impact on ESG performance reporting. Our results are useful for companies, investors, governments, and organizations in developing sustainability reporting standards. Full article
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17 pages, 986 KiB  
Review
Underutilized Fruit Crops at a Crossroads: The Case of Annona cherimola—From Pre-Columbian to Present Times
by Nerea Larranaga, Jorge A. Agustín, Federico Albertazzi, Gustavo Fontecha, Wilson Vásquez-Castillo, Ricardo Cautín, Edward Quiroz, Carla Ragonezi and Jose I. Hormaza
Horticulturae 2024, 10(6), 531; https://doi.org/10.3390/horticulturae10060531 (registering DOI) - 21 May 2024
Abstract
Fruits of the cherimoya tree (Annona cherimola Mill.) were consumed by native cultures in Central America, from where the crop was disseminated to South America in pre-Columbian times. Despite its historical significance and cultivation in subtropical regions worldwide, cherimoya remains an underutilized [...] Read more.
Fruits of the cherimoya tree (Annona cherimola Mill.) were consumed by native cultures in Central America, from where the crop was disseminated to South America in pre-Columbian times. Despite its historical significance and cultivation in subtropical regions worldwide, cherimoya remains an underutilized crop, particularly in its area of origin where the conservation of its genetic diversity is under threat. In this study, we provide a comprehensive overview of the research performed on this fruit tree over the past two decades, shedding light on its current status in terms of commercial production and germplasm conservation efforts in the main cherimoya producing countries in the Americas and Europe. Full article
(This article belongs to the Section Fruit Production Systems)
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11 pages, 1090 KiB  
Article
The Tryptophan Index Is Associated with Risk of Ischemic Stroke: A Community-Based Nested Case–Control Study
by Dong Liu, Yan Hong, Zhenting Chen, Yifan Ma, Shangyu Xia, Shujun Gu and Hui Zuo
Nutrients 2024, 16(11), 1544; https://doi.org/10.3390/nu16111544 (registering DOI) - 21 May 2024
Abstract
Background: The relative availability of the essential amino acid tryptophan in the brain, as indicated by the tryptophan index, which is the ratio of tryptophan to its competing amino acids (CAAs) in circulation, has been related to major depression. However, it remains unknown [...] Read more.
Background: The relative availability of the essential amino acid tryptophan in the brain, as indicated by the tryptophan index, which is the ratio of tryptophan to its competing amino acids (CAAs) in circulation, has been related to major depression. However, it remains unknown whether tryptophan availability is involved in the pathogenesis of ischemic stroke. Aims: We aimed to investigate the relationship between the tryptophan index and the risk of ischemic stroke. Methods: We performed a nested case–control study within a community-based cohort in eastern China over the period 2013 to 2018. The analysis included 321 cases of ischemic stroke and 321 controls matched by sex and date of birth. The plasma levels of tryptophan and CAAs, including tyrosine, valine, phenylalanine, leucine, and isoleucine, were measured by ultra-high-performance liquid chromatography–tandem mass spectrometry. Conditional logistic regression analyses were employed to determine incidence rate ratios (IRRs) and their 95% confidence intervals (CIs). Results: After adjustment for body mass index, current smoking status, educational attainment, physical activity, family history of stroke, hypertension, diabetes, hyperlipidemia, and estimated glomerular filtration rate, an elevated tryptophan index was significantly associated with a reduced risk of ischemic stroke in a dose–response manner (IRR, 0.76; 95% CI, 0.63–0.93, per standard deviation increment). The plasma tryptophan or CAAs were not separately associated with the risk of ischemic stroke. Conclusions: The tryptophan index was inversely associated with the risk of ischemic stroke. Our novel observations suggest that the availability of the essential amino acid tryptophan in the brain is involved in the pathogenesis of ischemic stroke. Full article
(This article belongs to the Section Nutritional Epidemiology)
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12 pages, 4675 KiB  
Article
TGF-β Signalling Regulates Cytokine Production in Inflammatory Cardiac Macrophages during Experimental Autoimmune Myocarditis
by Karolina Tkacz, Filip Rolski, Monika Stefańska, Kazimierz Węglarczyk, Rafał Szatanek, Maciej Siedlar, Gabriela Kania and Przemysław Błyszczuk
Int. J. Mol. Sci. 2024, 25(11), 5579; https://doi.org/10.3390/ijms25115579 (registering DOI) - 21 May 2024
Abstract
Myocarditis is characterized by an influx of inflammatory cells, predominantly of myeloid lineage. The progression of myocarditis to a dilated cardiomyopathy is markedly influenced by TGF-β signalling. Here, we investigate the role of TGF-β signalling in inflammatory cardiac macrophages in the development of [...] Read more.
Myocarditis is characterized by an influx of inflammatory cells, predominantly of myeloid lineage. The progression of myocarditis to a dilated cardiomyopathy is markedly influenced by TGF-β signalling. Here, we investigate the role of TGF-β signalling in inflammatory cardiac macrophages in the development of myocarditis and post-inflammatory fibrosis. Experimental autoimmune myocarditis (EAM) was induced in the LysM-Cre × R26-stop-EYFP × Tgfbr2-fl/fl transgenic mice showing impaired TGF-β signalling in the myeloid lineage and the LysM-Cre × R26-stop-EYFP control mice. In EAM, immunization led to acute myocarditis on day 21, followed by cardiac fibrosis on day 40. Both strains showed a similar severity of myocarditis and the extent of cardiac fibrosis. On day 21 of EAM, an increase in cardiac inflammatory macrophages was observed in both strains. These cells were sorted and analysed for differential gene expression using whole-genome transcriptomics. The analysis revealed activation and regulation of the inflammatory response, particularly the production of both pro-inflammatory and anti-inflammatory cytokines and cytokine receptors as TGF-β-dependent processes. The analysis of selected cytokines produced by bone marrow-derived macrophages confirmed their suppressed secretion. In conclusion, our findings highlight the regulatory role of TGF-β signalling in cytokine production within inflammatory cardiac macrophages during myocarditis. Full article
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10 pages, 1859 KiB  
Article
Fomentariol, a Fomes fomentarius Compound, Exhibits Anti-Diabetic Effects in Fungal Material: An In Vitro Analysis
by Matjaž Ravnikar, Borut Štrukelj, Biljana Otašević and Mateja Sirše
Nutraceuticals 2024, 4(2), 273-282; https://doi.org/10.3390/nutraceuticals4020017 (registering DOI) - 21 May 2024
Abstract
The present study screened various fungal species for inhibitors of alpha-glucosidase, alpha-amylase, and DPP-4, enzymes that are crucial in carbohydrate metabolism. Ethanolic extracts exhibited superior inhibitory activity compared to water extracts, suggesting their potential as sources of anti-diabetic agents. Further fractionation revealed fomentariol [...] Read more.
The present study screened various fungal species for inhibitors of alpha-glucosidase, alpha-amylase, and DPP-4, enzymes that are crucial in carbohydrate metabolism. Ethanolic extracts exhibited superior inhibitory activity compared to water extracts, suggesting their potential as sources of anti-diabetic agents. Further fractionation revealed fomentariol from Fomes fomentarius as a potent inhibitor of alpha-glucosidase and DPP-4, with higher activity against alpha-glucosidase than acarbose. Fomentariol presents a novel avenue for diabetes management, demonstrating the simultaneous inhibition of key enzymes in glucose metabolism. However, comprehensive clinical studies are needed to evaluate its safety and efficacy in humans. Full article
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13 pages, 6528 KiB  
Article
Residual Magnetic Field Testing System with Tunneling Magneto-Resistive Arrays for Crack Inspection in Ferromagnetic Pipes
by Shuxiang Zhao, Junqi Gao, Jiamin Chen and Lindong Pan
Sensors 2024, 24(11), 3259; https://doi.org/10.3390/s24113259 (registering DOI) - 21 May 2024
Abstract
Ferromagnetic pipes are widely used in the oil and gas industry. They are subject to cracks due to corrosion, pressure, and fatigue. It is significant to detect cracks for the safety of pipes. A residual magnetic field testing (RMFT) system is developed for [...] Read more.
Ferromagnetic pipes are widely used in the oil and gas industry. They are subject to cracks due to corrosion, pressure, and fatigue. It is significant to detect cracks for the safety of pipes. A residual magnetic field testing (RMFT) system is developed for crack detection in ferromagnetic pipes. Based on this background, a detection probe based on an array of tunneling magneto-resistive (TMR) sensors and permanent magnets is exploited. The probe is able to partially magnetize the pipe wall and collect magnetic signals simultaneously. First, a theoretical analysis of RMFT is presented. The physics principle of RMFT is introduced, and a finite element model is built. In the finite element simulations, the effects of the crack length and depth on the RMFT signal are analyzed, and the signal characteristics are selected to represent the crack size. Next, the validated experiments are conducted to demonstrate the feasibility of the proposed RMFT method in this paper. Full article
(This article belongs to the Special Issue Sensors in Nondestructive Testing)
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19 pages, 318 KiB  
Review
Stereotactic Body Radiotherapy in Recurrent and Oligometastatic Head and Neck Tumours
by Jodie L. M. Tham, Sweet Ping Ng, Richard Khor, Morikatsu Wada, Hui Gan, Alesha A. Thai, June Corry, Houda Bahig, Antti A. Mäkitie, Sandra Nuyts, Remco De Bree, Primož Strojan, Wai Tong Ng, Avraham Eisbruch, James C. H. Chow and Alfio Ferlito
J. Clin. Med. 2024, 13(11), 3020; https://doi.org/10.3390/jcm13113020 (registering DOI) - 21 May 2024
Abstract
The treatment of head and neck cancers (HNCs) encompasses a complex paradigm involving a combination of surgery, radiotherapy, and systemic treatment. Locoregional recurrence is a common cause of treatment failure, and few patients are suitable for salvage surgery. Reirradiation with conventional radiation techniques [...] Read more.
The treatment of head and neck cancers (HNCs) encompasses a complex paradigm involving a combination of surgery, radiotherapy, and systemic treatment. Locoregional recurrence is a common cause of treatment failure, and few patients are suitable for salvage surgery. Reirradiation with conventional radiation techniques is challenging due to normal tissue tolerance limits and the risk of significant toxicities. Stereotactic body radiotherapy (SBRT) has emerged as a highly conformal modality that offers the potential for cure while limiting the dose to surrounding tissue. There is also growing research that shows that those with oligometastatic disease can benefit from curative intent local ablative therapies such as SBRT. This review will look at published evidence regarding the use of SBRT in locoregional recurrent and oligometastatic HNCs. Full article
(This article belongs to the Special Issue Targeted Treatment in Head–Neck Cancer)
19 pages, 2500 KiB  
Article
Link Prediction in Complex Networks Using Average Centrality-Based Similarity Score
by Y. V. Nandini, T. Jaya Lakshmi, Murali Krishna Enduri and Hemlata Sharma
Entropy 2024, 26(6), 433; https://doi.org/10.3390/e26060433 (registering DOI) - 21 May 2024
Abstract
Link prediction plays a crucial role in identifying future connections within complex networks, facilitating the analysis of network evolution across various domains such as biological networks, social networks, recommender systems, and more. Researchers have proposed various centrality measures, such as degree, clustering coefficient, [...] Read more.
Link prediction plays a crucial role in identifying future connections within complex networks, facilitating the analysis of network evolution across various domains such as biological networks, social networks, recommender systems, and more. Researchers have proposed various centrality measures, such as degree, clustering coefficient, betweenness, and closeness centralities, to compute similarity scores for predicting links in these networks. These centrality measures leverage both the local and global information of nodes within the network. In this study, we present a novel approach to link prediction using similarity score by utilizing average centrality measures based on local and global centralities, namely Similarity based on Average Degree (SACD), Similarity based on Average Betweenness (SACB), Similarity based on Average Closeness (SACC), and Similarity based on Average Clustering Coefficient (SACCC). Our approach involved determining centrality scores for each node, calculating the average centrality for the entire graph, and deriving similarity scores through common neighbors. We then applied centrality scores to these common neighbors and identified nodes with above average centrality. To evaluate our approach, we compared proposed measures with existing local similarity-based link prediction measures, including common neighbors, the Jaccard coefficient, Adamic–Adar, resource allocation, preferential attachment, as well as recent measures like common neighbor and the Centrality-based Parameterized Algorithm (CCPA), and keyword network link prediction (KNLP). We conducted experiments on four real-world datasets. The proposed similarity scores based on average centralities demonstrate significant improvements. We observed an average enhancement of 24% in terms of Area Under the Receiver Operating Characteristic (AUROC) compared to existing local similarity measures, and a 31% improvement over recent measures. Furthermore, we witnessed an average improvement of 49% and 51% in the Area Under Precision-Recall (AUPR) compared to existing and recent measures. Our comprehensive experiments highlight the superior performance of the proposed method. Full article
(This article belongs to the Special Issue Advances in Complex Networks and Artificial Intelligence)
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