The 2023 MDPI Annual Report has
been released!
 
16 pages, 6555 KiB  
Review
Research Progress on Spike-Dependent SARS-CoV-2 Fusion Inhibitors and Small Molecules Targeting the S2 Subunit of Spike
by Matthew R. Freidel and Roger S. Armen
Viruses 2024, 16(5), 712; https://doi.org/10.3390/v16050712 (registering DOI) - 30 Apr 2024
Abstract
Since the beginning of the COVID-19 pandemic, extensive drug repurposing efforts have sought to identify small-molecule antivirals with various mechanisms of action. Here, we aim to review research progress on small-molecule viral entry and fusion inhibitors that directly bind to the SARS-CoV-2 Spike [...] Read more.
Since the beginning of the COVID-19 pandemic, extensive drug repurposing efforts have sought to identify small-molecule antivirals with various mechanisms of action. Here, we aim to review research progress on small-molecule viral entry and fusion inhibitors that directly bind to the SARS-CoV-2 Spike protein. Early in the pandemic, numerous small molecules were identified in drug repurposing screens and reported to be effective in in vitro SARS-CoV-2 viral entry or fusion inhibitors. However, given minimal experimental information regarding the exact location of small-molecule binding sites on Spike, it was unclear what the specific mechanism of action was or where the exact binding sites were on Spike for some inhibitor candidates. The work of countless researchers has yielded great progress, with the identification of many viral entry inhibitors that target elements on the S1 receptor-binding domain (RBD) or N-terminal domain (NTD) and disrupt the S1 receptor-binding function. In this review, we will also focus on highlighting fusion inhibitors that target inhibition of the S2 fusion function, either by disrupting the formation of the postfusion S2 conformation or alternatively by stabilizing structural elements of the prefusion S2 conformation to prevent conformational changes associated with S2 function. We highlight experimentally validated binding sites on the S1/S2 interface and on the S2 subunit. While most substitutions to the Spike protein to date in variants of concern (VOCs) have been localized to the S1 subunit, the S2 subunit sequence is more conserved, with only a few observed substitutions in proximity to S2 binding sites. Several recent small molecules targeting S2 have been shown to have robust activity over recent VOC mutant strains and/or greater broad-spectrum antiviral activity for other more distantly related coronaviruses. Full article
(This article belongs to the Special Issue Innovative Drug Discovery for Emerging Viral Diseases)
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11 pages, 2368 KiB  
Communication
Application of Digital Holographic Imaging to Monitor Real-Time Cardiomyocyte Hypertrophy Dynamics in Response to Norepinephrine Stimulation
by Wahida Akter, Herman Huang, Jacquelyn Simmons and Alexander Y. Payumo
Appl. Sci. 2024, 14(9), 3819; https://doi.org/10.3390/app14093819 (registering DOI) - 30 Apr 2024
Abstract
Cardiomyocyte hypertrophy, characterized by an increase in cell size, is associated with various cardiovascular diseases driven by factors including hypertension, myocardial infarction, and valve dysfunction. In vitro primary cardiomyocyte culture models have yielded numerous insights into the intrinsic and extrinsic mechanisms driving hypertrophic [...] Read more.
Cardiomyocyte hypertrophy, characterized by an increase in cell size, is associated with various cardiovascular diseases driven by factors including hypertension, myocardial infarction, and valve dysfunction. In vitro primary cardiomyocyte culture models have yielded numerous insights into the intrinsic and extrinsic mechanisms driving hypertrophic growth. However, due to limitations in current approaches, the dynamics of cardiomyocyte hypertrophic responses remain poorly characterized. In this study, we evaluate the application of the Holomonitor M4 digital holographic imaging microscope to track dynamic changes in cardiomyocyte surface area and volume in response to norepinephrine treatment, a model hypertrophic stimulus. The Holomonitor M4 permits non-invasive, label-free imaging of three-dimensional changes in cell morphology with minimal phototoxicity, thus enabling long-term imaging studies. Untreated and norepinephrine-stimulated primary neonatal rat cardiomyocytes were live-imaged on the Holomonitor M4, which was followed by image segmentation and single-cell tracking using the HOLOMONITOR App Suite software version 4.0.1.546. The 24 h treatment of cultured cardiomyocytes with norepinephrine increased cardiomyocyte spreading and optical volume as expected, validating the reliability of the approach. Single-cell tracking of both cardiomyocyte surface area and three-dimensional optical volume revealed dynamic increases in these parameters throughout the 24 h imaging period, demonstrating the potential of this technology to explore cardiomyocyte hypertrophic responses with greater temporal resolution; however, technological limitations were also observed and should be considered in the experimental design and interpretation of results. Overall, leveraging the unique advantages of the Holomonitor M4 digital holographic imaging system has the potential to empower future work towards understanding the molecular and cellular mechanisms underlying cardiomyocyte hypertrophy with enhanced temporal clarity. Full article
(This article belongs to the Special Issue Novel Approaches of Digital Holographic Microscopy in Cell Biology)
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15 pages, 9273 KiB  
Article
Analysis of Spatial and Temporal Dynamics of Finland’s Boreal Forests and Types over the Past Four Decades
by Taixiang Wen, Wenxue Fu and Xinwu Li
Forests 2024, 15(5), 786; https://doi.org/10.3390/f15050786 (registering DOI) - 30 Apr 2024
Abstract
In the context of global warming, the study of the long-term spatial change characteristics of boreal forest cover is not only important for global climate change and sustainable development research but can also provide support for further research on the response of boreal [...] Read more.
In the context of global warming, the study of the long-term spatial change characteristics of boreal forest cover is not only important for global climate change and sustainable development research but can also provide support for further research on the response of boreal forest changes to climate change. Using Landsat TM/OLI images from 1980 to 2020 as the data source and Google Earth Engine (GEE) as the platform, Finland was selected as the study area of boreal forests, and typical sample points of different features were chosen to classify forested and non-forested land using the random forest algorithm combined with spectral indices and classified feature sets of tasseled cap transform to obtain the four-phase forest cover change maps of the region. GEE test sample points and random selection points of images from the GF-2 and GF-7 satellites were used for verification. The classification accuracy was 97.17% and 88.9%. The five-phase forest cover images were segmented by a 2° latitude zone, and the spatial and temporal dynamic changes in forest cover in the whole area and each latitude zone were quantified by pixel superposition analysis. The results showed that, in the past 40 years, the boreal forest cover in Finland changed significantly, and the forest cover decreased from 75.79% to 65.36%, by 10.43%. Forest change mainly occurs in coniferous forests, whereas broadleaf forests are more stable. The forest coverage in each latitude zone decreased to varying degrees, with higher changes occurring in high-latitude areas above 64° N between 1980 and 2000, and higher and more severe changes occurring in low-latitude areas below 64° N between 2000 and 2020. Coniferous forests are the dominant type of forest in Finland, and the degradation of coniferous forests in the south is likely to become more severe, whereas the north and above is likely to become more favorable for coniferous forests. More monitoring and research are needed to follow up on the very different changes in the north and south regions. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
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14 pages, 7505 KiB  
Article
Intelligent Agents and Causal Inference: Enhancing Decision-Making through Causal Reasoning
by Jairo Iván Vélez Bedoya, Manuel González Bedia and Luis Fernando Castillo Ossa
Appl. Sci. 2024, 14(9), 3818; https://doi.org/10.3390/app14093818 (registering DOI) - 30 Apr 2024
Abstract
This study examines the incorporation of causal inference methods into intelligent entities and examines the benefits of utilizing causal reasoning to improve decision-making procedures. This study entails conducting an experimental evaluation within a video game setting to evaluate the performance of three separate [...] Read more.
This study examines the incorporation of causal inference methods into intelligent entities and examines the benefits of utilizing causal reasoning to improve decision-making procedures. This study entails conducting an experimental evaluation within a video game setting to evaluate the performance of three separate agent types: ExplorerBOT, GuardBOT, and CausalBOT. The ExplorerBOT utilizes a stochastic path selection technique for task completion, whereas the GuardBOT remains immobile yet exhibits exceptional proficiency in identifying and neutralizing other bots. On the other hand, the CausalBOT utilizes sophisticated causal inference methods to examine the underlying factors contributing to the failures noticed in the task completion of the ExplorerBOT. The aforementioned feature allows CausalBOT to make informed decisions by selecting paths that have a greater likelihood of achieving success. The main purpose of these experiments is to assess and compare the effectiveness of two distinct bots, namely ExplorerBOT and CausalBOT, in accomplishing their respective objectives. To facilitate comparison, two iterations of the ExplorerBOT are utilized. The initial iteration is predicated exclusively on stochastic path selection and necessitates a more profound understanding of the variables that impact the achievement of tasks. On the other hand, the second version integrates an algorithm for informed search. In contrast, CausalBOT employs causal inference techniques to discover the underlying causes of failures exhibited by ExplorerBOTs and collect pertinent data. Through the process of discerning the fundamental causal mechanisms, CausalBOT is able to make well-informed decisions by selecting pathways that maximize the probability of successfully completing a given job. The utilization of this approach greatly boosts the decision-making powers of CausalBOT, hence enabling it to effectively adapt and overcome problems in a more efficient manner when compared to alternative agents. Full article
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22 pages, 1423 KiB  
Review
Pathophysiological Link and Treatment Implication of Heart Failure and Preserved Ejection Fraction in Patients with Chronic Kidney Disease
by Giacomo Bonacchi, Valentina Alice Rossi, Manuel Garofalo, Rocco Mollace, Giuseppe Uccello, Paolo Pieragnoli, Luca Checchi, Laura Perrotta, Luca Voltolini, Giuseppe Ricciardi and Matteo Beltrami
Biomedicines 2024, 12(5), 981; https://doi.org/10.3390/biomedicines12050981 (registering DOI) - 30 Apr 2024
Abstract
Heart failure with preserved ejection fraction (HFpEF) results from a complex interplay of age, genetic, cardiac remodeling, and concomitant comorbidities including hypertension, obesity, diabetes, and chronic kidney disease (CKD). Renal failure is an important comorbidity of HFpEF, as well as a major pathophysiological [...] Read more.
Heart failure with preserved ejection fraction (HFpEF) results from a complex interplay of age, genetic, cardiac remodeling, and concomitant comorbidities including hypertension, obesity, diabetes, and chronic kidney disease (CKD). Renal failure is an important comorbidity of HFpEF, as well as a major pathophysiological mechanism for those patients at risk of developing HFpEF. Heart failure (HF) and CKD are intertwined conditions sharing common disease pathways; the so-called “kidney tamponade”, explained by an increase in intracapsular pressure caused by fluid retention, is only the latest model to explain renal injury in HF. Recognizing the different phenotypes of HFpEF remains a real challenge; the pathophysiological mechanisms of renal dysfunction may differ across the HF spectrum, as well as the prognostic role. A better understanding of the role of cardiorenal interactions in patients with HF in terms of symptom status, disease progression, and prognosis remains essential in HF management. Historically, patients with HF and CKD have been scarcely represented in clinical trial populations. Current concerns affect the practical approach to HF treatment, and, in this context, physicians are frequently hesitant to prescribe and titrate both new and old treatments. Therefore, the extensive application of HF drugs in diverse HF subtypes with numerous comorbidities and different renal dysfunction etiologies remains a controversial matter of discussion. Numerous recently introduced drugs, such as sodium–glucose-linked transporter 2 inhibitors (SGLT2i), constitute a new therapeutic option for patients with HF and CKD. Because of their protective vascular and hormonal actions, the use of these agents may be safely extended to patients with renal dysfunction in the long term. The present review delves into the phenotype of patients with HFpEF and CKD from a pathophysiological perspective, proposing a treatment approach that suggests a practical stepwise algorithm for the proper application of life-saving therapies in clinical practice. Full article
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28 pages, 1753 KiB  
Review
Nanotechnology-Driven Therapeutic Innovations in Neurodegenerative Disorders: A Focus on Alzheimer’s and Parkinson’s Disease
by Antea Krsek and Lara Baticic
Future Pharmacol. 2024, 4(2), 352-379; https://doi.org/10.3390/futurepharmacol4020020 (registering DOI) - 30 Apr 2024
Abstract
Neurodegenerative disorders entail a progressive loss of neurons in cerebral and peripheral tissues, coupled with the aggregation of proteins exhibiting altered physicochemical properties. Crucial to these conditions is the gradual degradation of the central nervous system, manifesting as impairments in mobility, aberrant behaviors, [...] Read more.
Neurodegenerative disorders entail a progressive loss of neurons in cerebral and peripheral tissues, coupled with the aggregation of proteins exhibiting altered physicochemical properties. Crucial to these conditions is the gradual degradation of the central nervous system, manifesting as impairments in mobility, aberrant behaviors, and cognitive deficits. Mechanisms such as proteotoxic stress, neuroinflammation, oxidative stress, and programmed cell death contribute to the ongoing dysfunction and demise of neurons. Presently, neurodegenerative diseases lack definitive cures, and available therapies primarily offer palliative relief. The integration of nanotechnology into medical practices has significantly augmented both treatment efficacy and diagnostic capabilities. Nanoparticles, capable of traversing the blood–brain barrier, hold considerable potential for diagnosing and treating brain pathologies. By combining gene therapy with nanotechnology, the therapeutic effectiveness against neurodegenerative diseases can be substantially enhanced. Recent advancements in nano-biomaterial-based methodologies have fortified existing approaches to neural stem cell (NSC) differentiation therapies. NSC-targeting technologies offer a promising, potentially safe method for treating neurodegenerative diseases. This review endeavors to summarize current insights and perspectives on nanotechnology-driven therapeutic innovations in neurodegenerative disorders, with a particular emphasis on Alzheimer’s and Parkinson’s disease. Full article
(This article belongs to the Special Issue Feature Papers in Future Pharmacology 2024)
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14 pages, 5052 KiB  
Article
The Use of Boosted Regression Trees to Predict the Occurrence and Quantity of Staphylococcus aureus in Recreational Marine Waterways
by Bridgette F. Froeschke, Michelle Roux-Osovitz, Margaret L. Baker, Ella G. Hampson, Stella L. Nau and Ashley Thomas
Water 2024, 16(9), 1283; https://doi.org/10.3390/w16091283 (registering DOI) - 30 Apr 2024
Abstract
Microbial monitoring in marine recreational waterways often overlooks environmental variables associated with pathogen occurrence. This study employs a predictive boosted regression trees (BRT) model to predict Staphylococcus aureus abundance in the Tampa Bay estuary and identify related environmental variables associated with the microbial [...] Read more.
Microbial monitoring in marine recreational waterways often overlooks environmental variables associated with pathogen occurrence. This study employs a predictive boosted regression trees (BRT) model to predict Staphylococcus aureus abundance in the Tampa Bay estuary and identify related environmental variables associated with the microbial pathogen’s occurrence. We provide evidence that the BRT model’s adaptability and ability to capture complex interactions among predictors make it invaluable for research on microbial indicator research. Over 18 months, water samples from 7 recreational sites underwent microbial quantitation and S. aureus isolation, followed by genetic validation. BRT analysis of S. aureus occurrence and environmental variables revealed month, precipitation, salinity, site, temperature, and year as relevant predictors. In addition, the BRT model accurately predicted S. aureus occurrence, setting a precedent for pathogen–environment research. The approach described here is novel and informs proactive management strategies and community health initiatives in marine recreational waterways. Full article
(This article belongs to the Section Oceans and Coastal Zones)
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28 pages, 8139 KiB  
Review
The Structure and Applications of Fused Tapered Fiber Optic Sensing: A Review
by Siqi Ban and Yudong Lian
Photonics 2024, 11(5), 414; https://doi.org/10.3390/photonics11050414 (registering DOI) - 30 Apr 2024
Abstract
Tapered optical fibers have continuously evolved in areas such as distributed sensing and laser generation in recent years. Their high sensitivity, ease of integration, and real-time monitoring capabilities have positioned them as a focal point in optical fiber sensing. This paper systematically introduces [...] Read more.
Tapered optical fibers have continuously evolved in areas such as distributed sensing and laser generation in recent years. Their high sensitivity, ease of integration, and real-time monitoring capabilities have positioned them as a focal point in optical fiber sensing. This paper systematically introduces the structures and characteristics of various tapered optical fiber sensors, providing a comprehensive overview of their applications in biosensing, environmental monitoring, and industrial surveillance. Furthermore, it offers insights into the developmental trends of tapered optical fiber sensing, providing valuable references for future related research and suggesting potential directions for the further advancement of optical fiber sensing. Full article
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16 pages, 3150 KiB  
Article
Trichoderma virens and Pseudomonas chlororaphis Differentially Regulate Maize Resistance to Anthracnose Leaf Blight and Insect Herbivores When Grown in Sterile versus Non-Sterile Soils
by Pei-Cheng Huang, Peiguo Yuan, John M. Grunseich, James Taylor, Eric-Olivier Tiénébo, Elizabeth A. Pierson, Julio S. Bernal, Charles M. Kenerley and Michael V. Kolomiets
Plants 2024, 13(9), 1240; https://doi.org/10.3390/plants13091240 (registering DOI) - 30 Apr 2024
Abstract
Soil-borne Trichoderma spp. have been extensively studied for their biocontrol activities against pathogens and growth promotion ability in plants. However, the beneficial effect of Trichoderma on inducing resistance against insect herbivores has been underexplored. Among diverse Trichoderma species, consistent with previous reports, we [...] Read more.
Soil-borne Trichoderma spp. have been extensively studied for their biocontrol activities against pathogens and growth promotion ability in plants. However, the beneficial effect of Trichoderma on inducing resistance against insect herbivores has been underexplored. Among diverse Trichoderma species, consistent with previous reports, we showed that root colonization by T. virens triggered induced systemic resistance (ISR) to the leaf-infecting hemibiotrophic fungal pathogens Colletotrichum graminicola. Whether T. virens induces ISR to insect pests has not been tested before. In this study, we investigated whether T. virens affects jasmonic acid (JA) biosynthesis and defense against fall armyworm (FAW) and western corn rootworm (WCR). Unexpectedly, the results showed that T. virens colonization of maize seedlings grown in autoclaved soil suppressed wound-induced production of JA, resulting in reduced resistance to FAW. Similarly, the bacterial endophyte Pseudomonas chlororaphis 30-84 was found to suppress systemic resistance to FAW due to reduced JA. Further comparative analyses of the systemic effects of these endophytes when applied in sterile or non-sterile field soil showed that both T. virens and P. chlororaphis 30-84 triggered ISR against C. graminicola in both soil conditions, but only suppressed JA production and resistance to FAW in sterile soil, while no significant impact was observed when applied in non-sterile soil. In contrast to the effect on FAW defense, T. virens colonization of maize roots suppressed WCR larvae survival and weight gain. This is the first report suggesting the potential role of T. virens as a biocontrol agent against WCR. Full article
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11 pages, 712 KiB  
Article
Challenges in Media Attention toward COVID-19-Preventive Behaviors: Dual Roles of Threat and Perceived Capability for Information Systems and Health Care
by Suyu Chou and Rebecca Katherine Britt
Behav. Sci. 2024, 14(5), 377; https://doi.org/10.3390/bs14050377 (registering DOI) - 30 Apr 2024
Abstract
Based on the extended parallel process model, this study investigated the relationship between young adults’ media exposure to COVID-19 and their adoption of protective behaviors. This study surveyed 141 college students and found that increased risk perceptions led to greater intentions to engage [...] Read more.
Based on the extended parallel process model, this study investigated the relationship between young adults’ media exposure to COVID-19 and their adoption of protective behaviors. This study surveyed 141 college students and found that increased risk perceptions led to greater intentions to engage in COVID-19-preventive behaviors and that these intentions were mediated by normative beliefs. There was no significant difference in risk perceptions between traditional media and social media. The results showed that college students took precautions against COVID-19 because they perceived themselves to be both vulnerable and capable. Full article
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14 pages, 1537 KiB  
Article
Short-Term Panax Ginseng Extract Supplementation Reduces Fasting Blood Triacylglycerides and Oxygen Consumption during Sub-Maximal Aerobic Exercise in Male Recreational Athletes
by Didier Hernández-García, Ana Belén Granado-Serrano, Meritxell Martín-Gari, Assumpta Ensenyat, Alba Naudí and Jose C. E. Serrano
Biomolecules 2024, 14(5), 533; https://doi.org/10.3390/biom14050533 (registering DOI) - 30 Apr 2024
Abstract
Ginseng, a popular herbal supplement among athletes, is believed to enhance exercise capacity and performance. This study investigated the short-term effects of Panax ginseng extract (PG) on aerobic capacity, lipid profile, and cytokines. In a 14-day randomized, double-blind trial, male participants took 500 [...] Read more.
Ginseng, a popular herbal supplement among athletes, is believed to enhance exercise capacity and performance. This study investigated the short-term effects of Panax ginseng extract (PG) on aerobic capacity, lipid profile, and cytokines. In a 14-day randomized, double-blind trial, male participants took 500 mg of PG daily. Two experiments were conducted: one in 10 km races (n = 31) and another in a laboratory-controlled aerobic capacity test (n = 20). Blood lipid and cytokine profile, ventilation, oxygen consumption, hemodynamic and fatigue parameters, and race time were evaluated. PG supplementation led to reduced total blood lipid levels, particularly in triacylglycerides (10 km races −7.5 mg/dL (95% CI −42 to 28); sub-maximal aerobic test −14.2 mg/dL (95% CI −52 to 23)), while post-exercise blood IL-10 levels were increased (10 km 34.0 pg/mL (95% CI −2.1 to 70.1); sub-maximal aerobic test 4.1 pg/mL (95% CI −2.8 to 11.0)), and oxygen consumption decreased during the sub-maximal aerobic test (VO2: −1.4 mL/min/kg (95% CI −5.8 to −0.6)). No significant differences were noted in race time, hemodynamic, or fatigue parameters. Overall, PG supplementation for 2 weeks showed benefits in blood lipid profile and energy consumption during exercise among recreational athletes. This suggests a potential role for PG in enhancing exercise performance and metabolic health in this population. Full article
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12 pages, 2957 KiB  
Article
Programmed Death Ligand-1 and Tumor Burden Score Dictate Treatment Responses in Patients with Recurrent or Metastatic Head and Neck Squamous Cell Carcinoma
by Ming-Yu Lien, Chih-Chun Wang, Tzer-Zen Hwang, Ching-Yun Hsieh, Chuan-Chien Yang, Chien-Chung Wang, Ching-Feng Lien, Yu-Chen Shih, Shyh-An Yeh and Meng-Che Hsieh
Cancers 2024, 16(9), 1748; https://doi.org/10.3390/cancers16091748 (registering DOI) - 30 Apr 2024
Abstract
Background: The significance of tumor burden for survival is unknown for patients with recurrent or metastatic head and neck squamous cell carcinoma (R/M HNSCC). The purpose of our study was to evaluate the prognostic impact of programmed death ligand-1 (PD-L1) and tumor burden [...] Read more.
Background: The significance of tumor burden for survival is unknown for patients with recurrent or metastatic head and neck squamous cell carcinoma (R/M HNSCC). The purpose of our study was to evaluate the prognostic impact of programmed death ligand-1 (PD-L1) and tumor burden score (TBS) in patients with R/M HNSCC. Patients and Methods: R/M HNSCC patients who were treated with cisplatin, 5-fluorouracil plus cetuximab (EPF) or pembrolizumab (PPF) as first-line treatment were included in our study. PD-L1 and TBS were estimated and correlated with treatment responses. Kaplan–Meier curves were plotted for outcomes estimation. Results: A total of 252 R/M HNSCC patients were included, with 126 high tumor burden (HTB) and 126 low tumor burden (LTB) patients. Median progression-free survival (PFS) was 7.1 months in LTB and 3.9 months in HTB (p < 0.001) and median overall survival (OS) was 14.2 months in LTB and 9.2 months in HTB (p = 0.001). Patients with LTB had better PFS and OS than those with HTB independent of PD-L1 status. Subgroup analysis showed HTB patients treated with EPF had better survival than those treated with PPF, regardless of PD-L1 expression. For LTB PD-L1 positive patients, there was a longer survival with PPF than EPF, while for LTB PD-L1 negative patients, survival was similar between PPF and EPF. Multivariate analysis exhibited that tumor burden was significantly correlated with OS. Conclusions: Tumor burden is significantly correlated with survival in patients with R/M HNSCC. PD-L1 and TBS should be taken into consideration to determine first-line treatment. Full article
(This article belongs to the Special Issue Head and Neck Cancers—Novel Approaches and Future Outlook)
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12 pages, 4595 KiB  
Article
The First Cretaceous Epyrine Wasp (Hymenoptera: Bethylidae): A New Genus and Species from Early Cenomanian Kachin Amber
by Manuel Brazidec, Volker Lohrmann and Vincent Perrichot
Insects 2024, 15(5), 318; https://doi.org/10.3390/insects15050318 (registering DOI) - 30 Apr 2024
Abstract
The Epyrinae are the second largest subfamily of Bethylidae and the most diverse in the fossil record. However, although six of the nine bethylid subfamilies are known during the Cretaceous (either as compression or amber fossils), the Epyrinae were hitherto unknown before the [...] Read more.
The Epyrinae are the second largest subfamily of Bethylidae and the most diverse in the fossil record. However, although six of the nine bethylid subfamilies are known during the Cretaceous (either as compression or amber fossils), the Epyrinae were hitherto unknown before the lower Eocene. In this contribution, we report the discovery of the oldest member of this group, based on a female specimen from the early Cenomanian amber of Kachin, Myanmar. We describe and illustrate a new genus and species, Hukawngepyris setosus gen. et sp. nov. The new genus is compared with the other epyrine genera and characterized by a unique combination of characters not known in the subfamily. Hukawngepyris setosus gen. et sp. nov. is especially unique in the configuration of the forewing venation, with a complete 2r-rs&Rs vein, curved towards the anterior wing margin, and the presence of three proximal and three distal hamuli. The key to the genera of Epyrinae is accommodated to include the newly erected genus. Full article
(This article belongs to the Section Insect Systematics, Phylogeny and Evolution)
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3 pages, 157 KiB  
Editorial
Prebiotics and Probiotics: Healthy Biotools for Molecular Integrative and Modulation Approaches 2.0
by Margarita Aguilera and Abdelali Daddaoua
Int. J. Mol. Sci. 2024, 25(9), 4872; https://doi.org/10.3390/ijms25094872 (registering DOI) - 30 Apr 2024
Abstract
The current version (2 [...] Full article
14 pages, 2857 KiB  
Article
Biodepolymerization of Polyamide Fibers Using Yarrowia lipolytica as Whole-Cell Biocatalyst
by Adriano Carniel, Nathália Ferreira dos Santos, Filipe Smith Buarque, Absai da Conceição Gomes, Luiz Silvino Chinelatto Junior, Luiz Alexandre Sacorague, Maria Alice Zarur Coelho and Aline M. Castro
Fermentation 2024, 10(5), 239; https://doi.org/10.3390/fermentation10050239 (registering DOI) - 30 Apr 2024
Abstract
Polyamide is a thermoplastic polymer widely used for several applications, including cables in offshore oil and gas operations. Due to its growing annual production worldwide, this poorly biodegradable material has been a source of pollution. Given this scenario, the need has arisen to [...] Read more.
Polyamide is a thermoplastic polymer widely used for several applications, including cables in offshore oil and gas operations. Due to its growing annual production worldwide, this poorly biodegradable material has been a source of pollution. Given this scenario, the need has arisen to develop environmentally friendly techniques to degrade this waste, and biotechnology has emerged as a possible solution to mitigate this problem. This study aimed to investigate the potential of Yarrowia lipolytica to biodepolymerize polyamide fibers (PAF). Microbial cultures were grown in shaken flasks containing different concentrations of PAF (0.5 and 2 g·L−1) and in a bioreactor with and without pH adjustment. PAF mass loss was up to 16.8%, achieved after 96 h of cultivation in a bioreactor without pH adjustment. Additionally, NMR analyses revealed that the amorphous regions of PAF, which are more susceptible to depolymerization, were reduced by 6% during cultivation. These preliminary results indicate the biotechnological potential of Y. lipolytica to depolymerize PAF. Full article
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22 pages, 7259 KiB  
Article
The Potential Roles of Host Cell miRNAs in Fine-Tuning Bovine Coronavirus (BCoV) Molecular Pathogenesis, Tissue Tropism, and Immune Regulation
by Abid Ullah Shah and Maged Gomaa Hemida
Microorganisms 2024, 12(5), 897; https://doi.org/10.3390/microorganisms12050897 (registering DOI) - 30 Apr 2024
Abstract
Bovine coronavirus (BCoV) infection causes significant economic loss to the dairy and beef industries worldwide. BCoV exhibits dual tropism, infecting the respiratory and enteric tracts of cattle. The enteric BCoV isolates could also induce respiratory manifestations under certain circumstances. However, the mechanism of [...] Read more.
Bovine coronavirus (BCoV) infection causes significant economic loss to the dairy and beef industries worldwide. BCoV exhibits dual tropism, infecting the respiratory and enteric tracts of cattle. The enteric BCoV isolates could also induce respiratory manifestations under certain circumstances. However, the mechanism of this dual tropism of BCoV infection has not yet been studied well. MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression and play a dual role in virus infection, mediating virus or modulating host immune regulatory genes through complex virus–host cell interactions. However, their role in BCoV infection remains unclear. This study aims to identify bovine miRNAs crucial for regulating virus–host interaction, influencing tissue tropism, and explore their potential as biomarkers and therapeutic agents against BCoV. We downloaded 18 full-length BCoV genomes (10 enteric and eight respiratory) from GenBank. We applied several bioinformatic tools to study the host miRNAs targeting various regions in the viral genome. We used the criteria of differential targeting between the enteric/respiratory isolates to identify some critical miRNAs as biological markers for BCoV infection. Using various online bioinformatic tools, we also searched for host miRNA target genes involved in BCoV infection, immune evasion, and regulation. Our results show that four bovine miRNAs (miR-2375, miR-193a-3p, miR-12059, and miR-494) potentially target the BCoV spike protein at multiple sites. These miRNAs also regulate the host immune suppressor pathways, which negatively impacts BCoV replication. Furthermore, we found that bta-(miR-2338, miR-6535, miR-2392, and miR-12054) also target the BCoV genome at certain regions but are involved in regulating host immune signal transduction pathways, i.e., type I interferon (IFN) and retinoic acid-inducible gene I (RIG-I) pathways. Moreover, both miR-2338 and miR-2392 also target host transcriptional factors RORA, YY1, and HLF, which are potential diagnostic markers for BCoV infection. Therefore, miR-2338, miR-6535, miR-2392, and miR-12054 have the potential to fine-tune BCoV tropism and immune evasion and enhance viral pathogenesis. Our results indicate that host miRNAs play essential roles in the BCoV tissue tropism, pathogenesis, and immune regulation. Four bovine miRNAs (miR-2375, bta-miR-193a-3p, bta-miR-12059, and bta-miR-494) target BCoV-S glycoprotein and are potentially involved in several immune suppression pathways during the viral infection. These miRNA candidates could serve as good genetic markers for BCoV infection. However, further studies are urgently needed to validate these identified miRNAs and their target genes in the context of BCoV infection and dual tropism and as genetic markers. Full article
(This article belongs to the Special Issue Molecular Biology of Coronaviruses in Animals)
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18 pages, 2118 KiB  
Article
Using Beerkan Procedure to Estimate Hydraulic Soil Properties under Long Term Agroecosystems Experiments
by Lorenzo Vergni, Grazia Tosi, Jennifer Bertuzzi, Giulia Rossi, Michela Farneselli, Giacomo Tosti, Francesco Tei, Alberto Agnelli and Francesca Todisco
Appl. Sci. 2024, 14(9), 3817; https://doi.org/10.3390/app14093817 (registering DOI) - 30 Apr 2024
Abstract
The BEST (Beerkan Estimation of Soil Transfer parameters) method was used to compare the hydraulic properties of the soils in two Long-term Agroecosystem Experiments (LTAEs) located at the FIELDLAB experimental site of the University of Perugia (central Italy). The LTAE “NewSmoca” consists of [...] Read more.
The BEST (Beerkan Estimation of Soil Transfer parameters) method was used to compare the hydraulic properties of the soils in two Long-term Agroecosystem Experiments (LTAEs) located at the FIELDLAB experimental site of the University of Perugia (central Italy). The LTAE “NewSmoca” consists of a biennial maize-durum wheat crop rotation under integrated low-input cropping systems with (i) inversion soil tillage (INT) or (ii) no-tillage (INT+) and (iii) under an organic cropping system with inversion soil tillage (ORG). ORG and INT+ involve the use of autumn-sown cover crops (before the maize cycle). Pure stand durum wheat was grown in INT and INT+, while a faba bean–wheat temporary intercropping was implemented in ORG. The LTAE “Crop Rotation” consists of different crop rotations and residue management, a continuous soft winter wheat and biennial rotations of soft winter wheat with maize or faba bean. Each rotation is combined with two modes of crop residue management: removal or burial. For INT+, despite the high-bulk density (>1.50 g/cm3), we found that conductivity, sorptivity and available water are comparable to those of INT, probably due to a more structured and efficient micropore system. ORG soils show the highest conductivity, sorptivity and available water content values, probably due to the recent spring tillage occurring in the wheat inter-row with the faba bean incorporation into the soil. For LTAE Rotation, the residue burial seems to influence the capacity-based indicators positively. However, the differences in the removal treatment are minor, and this could be due to the inversion soil tillage, which limits the progressive accumulation of organic matter. Full article
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12 pages, 1186 KiB  
Article
Clinical Profile of Patients with Primary Sjögren’s Syndrome with Non-Identified Antinuclear Autoantibodies
by Dorian Parisis, Julie Sarrand, Xavier Cabrol, Christine Delporte and Muhammad S. Soyfoo
Diagnostics 2024, 14(9), 935; https://doi.org/10.3390/diagnostics14090935 (registering DOI) - 30 Apr 2024
Abstract
Objectives—The aim of the present study was to characterize the clinical phenotype of patients with primary Sjögren’s syndrome (pSS) with non-identified antinuclear antibodies (ANA) in comparison with that of patients with pSS with negative ANA, positive typical ANA (anti-Ro/SSA and/or La/SSB) and positive [...] Read more.
Objectives—The aim of the present study was to characterize the clinical phenotype of patients with primary Sjögren’s syndrome (pSS) with non-identified antinuclear antibodies (ANA) in comparison with that of patients with pSS with negative ANA, positive typical ANA (anti-Ro/SSA and/or La/SSB) and positive atypical ANA. Methods—We conducted an observational, retrospective monocentric study at the Erasme University Hospital (Brussels, Belgium). Two hundred and thirty-three patients fulfilling the 2002 American–European Consensus Group criteria for pSS were included in this study. The patients were subdivided according to their ANA profile and demographics. The clinical and biological data of each subgroup were compared. Moreover, the relationships between these data and the ANA profiles were determined by multiple correspondence analysis. Results—In our cohort, 42 patients (18%) presented a non-identified ANA-positive profile. No statistically significant difference could be observed between non-identified ANA patients and ANA-negative patients in terms of age and/or ESSDAI score at diagnosis. There were significantly more frequent articular manifestations, positive rheumatoid factor (RF), and the use of corticosteroids in anti-Ro/SSA-positive patients compared to ANA-negative (p ≤ 0.0001) and non-identified ANA-positive patients (p ≤ 0.01). However, a significantly higher proportion of RF positivity and corticosteroid treatment was observed in non-identified ANA-positive patients compared to ANA-negative patients (p < 0.05). Conclusions—For the first time to our knowledge, our study has characterized the clinical phenotype of patients with pSS with non-identified ANA at diagnosis. The non-identified ANA-positive patients featured mostly a clinical phenotype similar to that of the ANA-negative patients. On the other hand, the non-identified ANA-positive patients were mainly distinguished from the ANA-negative patients by a greater proportion of RF positivity and the need for corticosteroid use due to articular involvement. Full article
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9 pages, 1699 KiB  
Article
Research and Development of Online Monitoring Protection Sensors for Paper Books Based on TiO2 NT/MoS2
by Jia Wang, Lifang Ke, Jieling Wu, Feng Liang and Yanxiong Xiang
Coatings 2024, 14(5), 552; https://doi.org/10.3390/coatings14050552 (registering DOI) - 30 Apr 2024
Abstract
NO2 is a prevalent environmental pollutant, and its reaction with water produces nitric acid, which is one of the main factors contributing to the degradation of books and paper. Therefore, it is crucial to develop a real-time monitoring system for NO2 [...] Read more.
NO2 is a prevalent environmental pollutant, and its reaction with water produces nitric acid, which is one of the main factors contributing to the degradation of books and paper. Therefore, it is crucial to develop a real-time monitoring system for NO2 gas content in the air and establish timely response measures to delay book aging and provide effective protection. In this study, TiO2 nanotubes (NTs) were fabricated using the anodic oxidation method, followed by the preparation of TiO2 NT/MoS2 composites through hydrothermal synthesis. It was observed that flaky MoS2 is attached to the surface of TiO2 nanotubes, forming aggregated structures resembling flower balls. The TiO2 NT/MoS2 nanocomposites were found to exhibit a rapid response with a 5 s response time and an 80 s recovery time towards 367 ppm NO2 at 260 °C. The gas response to 100 ppm NO2 vapor was 3.3, which is higher than all the other gases under the same concentration. Our experimental results demonstrate that compared to pure TiO2 NTs, TiO2 NT/MoS2 composites exhibit a larger specific surface area along with higher sensitivity and faster response times towards various concentrations of NO2 gas. Full article
(This article belongs to the Special Issue Current Trends in Coatings and Films for Optical Sensors)
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15 pages, 5567 KiB  
Article
Profiling the Gut Microbiota in Obese Children with Formula Feeding in Early Life and Selecting Strains against Obesity
by Cong Liang and Lan-Wei Zhang
Foods 2024, 13(9), 1379; https://doi.org/10.3390/foods13091379 (registering DOI) - 30 Apr 2024
Abstract
Formula feeding, obesity and the gut microbiota are closely related. The present investigation explored the profiles of the intestinal microbiota in obese children over 5 years old with formula feeding in early life. We identified functional bacteria with anti-obesity potential through in vitro [...] Read more.
Formula feeding, obesity and the gut microbiota are closely related. The present investigation explored the profiles of the intestinal microbiota in obese children over 5 years old with formula feeding in early life. We identified functional bacteria with anti-obesity potential through in vitro and in vivo experiments, elucidating their mechanisms. The results indicated that, in the group of children over 5 years old who were fed formula in early life, obese children exhibited distinct gut microbiota, which were characterized by diminished species diversity and reduced Bifidobacterium levels compared to normal-weight children. As a result, Lactobacillus acidophilus H-68 (H-68) was isolated from the feces of the N-FF group and recognized as a promising candidate. H-68 demonstrated the ability to stimulate cholecystokinin (CCK) secretion in STC-1 cells and produce bile salt hydrolase. In vivo, H-68 promoted CCK secretion, suppressing food intake, and regulated bile acid enterohepatic circulation, leading to increased deoxycholic acid and lithocholic acid levels in the ileum and liver. This regulation effectively inhibited the diet-induced body weight and body fat gain, along with the liver fat deposition. In conclusion, H-68 was recognized for its prospective anti-obesity impact, signifying an auspicious pathway for forthcoming interventions targeted at averting pediatric obesity in formula-fed children. Full article
(This article belongs to the Special Issue Health Benefits of Probiotics and Prebiotics in Functional Foods)
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17 pages, 4490 KiB  
Article
Therapeutic Effects of Hinokitiol through Regulating the SIRT1/NOX4 against Ligature-Induced Experimental Periodontitis
by Tae-Yeon Kim, Eun-Nam Kim and Gil-Saeng Jeong
Antioxidants 2024, 13(5), 550; https://doi.org/10.3390/antiox13050550 (registering DOI) - 30 Apr 2024
Abstract
Hinokitiol (HKT) is one of the essential oil components found in the heartwood of Cupressaceae plants, and has been reported to have various bioactive effects, including anti-inflammatory effects. However, the improving effect of HKT on periodontitis, which is characterized by periodontal tissue inflammation [...] Read more.
Hinokitiol (HKT) is one of the essential oil components found in the heartwood of Cupressaceae plants, and has been reported to have various bioactive effects, including anti-inflammatory effects. However, the improving effect of HKT on periodontitis, which is characterized by periodontal tissue inflammation and alveolar bone loss, has not been clearly revealed. Therefore, we investigated the periodontitis-alleviating effect of HKT and the related molecular mechanisms in human periodontal ligament cells. According to the study results, HKT downregulated SIRT1 and NOX4, which were increased by Porphyromonas gingivalis Lipopolysaccharide (PG-LPS) stimulation and were found to regulate pro-inflammatory mediators and oxidative stress through SIRT1/NOX4 signals. Additionally, by increasing the expression of osteogenic makers such as alkaline phosphatase, osteogenic induction of human periodontal ligament (HPDL) cells, which had been reduced by PG-LPS, was restored. Furthermore, we confirmed that NOX4 expression was regulated through regulation of SIRT1 expression with HKT. The in vitro effect of HKT on improving periodontitis was proven using the periodontal inflammation model, which induces periodontal inflammation using ligature, a representative in vivo model. According to in vivo results, HKT alleviated periodontal inflammation and restored damaged alveolar bone in a concentration-dependent manner in the periodontal inflammation model. Through this experiment, the positive effects of HKT on relieving periodontal tissue inflammation and recovering damaged alveolar bone, which are important treatment strategies for periodontitis, were confirmed. Therefore, these results suggest that HKT has potential in the treatment of periodontitis. Full article
(This article belongs to the Special Issue Antioxidant Capacity of Natural Products)
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13 pages, 486 KiB  
Article
Novel Approach towards a Fully Deep Learning-Based IoT Receiver Architecture: From Estimation to Decoding
by Matthew Boeding, Michael Hempel and Hamid Sharif
Future Internet 2024, 16(5), 155; https://doi.org/10.3390/fi16050155 (registering DOI) - 30 Apr 2024
Abstract
As the Internet of Things (IoT) continues to expand, wireless communication is increasingly widespread across diverse industries and remote devices. This includes domains such as Operational Technology in the Smart Grid. Notably, there is a surge in resource-constrained devices leveraging wireless communication, especially [...] Read more.
As the Internet of Things (IoT) continues to expand, wireless communication is increasingly widespread across diverse industries and remote devices. This includes domains such as Operational Technology in the Smart Grid. Notably, there is a surge in resource-constrained devices leveraging wireless communication, especially with the advances of 5G/6G technology. Nevertheless, the transmission of wireless communications demands substantial power and computational resources, presenting a significant challenge to these devices and their operations. In this work, we propose the use of deep learning to improve the Bit Error Rate (BER) performance of Orthogonal Frequency Division Multiplexing (OFDM) wireless receivers. By improving the BER performance of these receivers, devices can transmit with less power, thereby improving IoT devices’ battery life. The architecture presented in this paper utilizes a depthwise Convolutional Neural Network (CNN) for channel estimation and demodulation, whereas a Graph Neural Network (GNN) is utilized for Low-Density Parity Check (LDPC) decoding, tested against a proposed (1998, 1512) LDPC code. Our results show higher performance than traditional receivers in both isolated tests for the CNN and GNN, and a combined end-to-end test with lower computational complexity than other proposed deep learning models. For BER improvement, our proposed approach showed a 1 dB improvement for eliminating BER in QPSK models. Additionally, it improved 16-QAM Rician BER by five decades, 16-QAM LOS model BER by four decades, 64-QAM Rician BER by 2.5 decades, and 64-QAM LOS model BER by three decades. Full article
(This article belongs to the Special Issue State-of-the-Art Future Internet Technology in USA 2024–2025)
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11 pages, 1356 KiB  
Article
Phosphate Recovery Mechanism from Low P-Containing Wastewaters via CaP Crystallization Using Apatite as Seed: Seed Adsorption, Surface-Induced Crystallization, or Ion Clusters Aggregation?
by Xiaobao Nie, Yinan Li, Junli Wan, Shuai Ouyang, Zhengbo Wang, Guoqi Wang and Heng Jiang
Separations 2024, 11(5), 138; https://doi.org/10.3390/separations11050138 (registering DOI) - 30 Apr 2024
Abstract
Low P-containing wastewaters (LPWs) exhibit huge P recovery potential, considering their larger volume. P recovery via CaP crystallization using apatite as seed is documented as being potentially well suited for LPWs. However, its responsible mechanisms remain a subject for debate. Taking hydroxyapatite (HAP) [...] Read more.
Low P-containing wastewaters (LPWs) exhibit huge P recovery potential, considering their larger volume. P recovery via CaP crystallization using apatite as seed is documented as being potentially well suited for LPWs. However, its responsible mechanisms remain a subject for debate. Taking hydroxyapatite (HAP) as the seed of LPWs, this paper conducted HAP adsorption/dissolution experiments, titration experiments, and P recovery experiments to distinguish the primary responsible mechanism. Results showed that it was HAP dissolution, not P adsorption, that occurred when the initial P concentration was no higher than 5 mg/L, ruling out adsorption mechanism of P recovery from LPWs using HAP as the seed. Significant OH consumption and rapid P recovery occurred simultaneously within the first 60 s in titration experiments, suggesting CaP crystallization should be responsible for P recovery. Moreover, the continuous increase in P recovery efficiency with seed dosages observed in P recovery experiments seemed to follow well the mechanism of pre-nucleation ion clusters (PNCs) aggregation. During PNCs aggregation, P aggregates with Ca2+ quickly, generating CaP PNCs; then, CaP PNCs aggregate with seed particles, followed by CaP PNCs fusion, and ultimately transform into fines attached to the seed surface. PNCs’ aggregation mechanism was further supported by a comparison of seed SEM images before and after P recovery, since denser and smaller rod-shaped fines were observed on the seed surface after P recovery. This study suggests that PNCs’ aggregation is the dominant mechanism responsible for the recovery of P from LPWs via CaP crystallization using HAP as the seed. Full article
(This article belongs to the Section Environmental Separations)
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