The 2023 MDPI Annual Report has
been released!
 
23 pages, 1507 KiB  
Article
Real-Size Reconstruction of Porous Media Using the Example of Fused Filament Fabrication 3D-Printed Rock Analogues
by Alexander A. Oskolkov, Alexander A. Kochnev, Sergey N. Krivoshchekov and Yan V. Savitsky
J. Manuf. Mater. Process. 2024, 8(3), 104; https://doi.org/10.3390/jmmp8030104 (registering DOI) - 17 May 2024
Abstract
The multi-scale study of rock properties is a necessary step in the planning of oil and gas reservoir developments. The amount of core samples available for research is usually limited, and some of the samples can be distracted. The investigation of core reconstruction [...] Read more.
The multi-scale study of rock properties is a necessary step in the planning of oil and gas reservoir developments. The amount of core samples available for research is usually limited, and some of the samples can be distracted. The investigation of core reconstruction possibilities is an important task. An approach to the real-size reconstruction of porous media with a given (target) porosity and permeability by controlling the parameters of FFF 3D printing using CT images of the original core is proposed. Real-size synthetic core specimens based on CT images were manufactured using FFF 3D printing. The possibility of reconstructing the reservoir properties of a sandstone core sample was proven. The results of gas porometry measurements showed that the porosity of specimens No.32 and No.46 was 13.5% and 12.8%, and the permeability was 442.3 mD and 337.8 mD, respectively. The porosity of the original core was 14% and permeability was 271 mD. It was found that changing the layer height and nozzle diameter, as well as the retract and restart distances, has a direct effect on the porosity and permeability of synthetic specimens. This study shows that porosity and permeability of synthetic specimens depend on the flow of the material and the percentage of overlap between the infill and the outer wall. Full article
20 pages, 695 KiB  
Review
A Comprehensive Review on Circulating cfRNA in Plasma: Implications for Disease Diagnosis and Beyond
by Pengqiang Zhong, Lu Bai, Mengzhi Hong, Juan Ouyang, Ruizhi Wang, Xiaoli Zhang and Peisong Chen
Diagnostics 2024, 14(10), 1045; https://doi.org/10.3390/diagnostics14101045 (registering DOI) - 17 May 2024
Abstract
Circulating cfRNA in plasma has emerged as a fascinating area of research with potential applications in disease diagnosis, monitoring, and personalized medicine. Circulating RNA sequencing technology allows for the non-invasive collection of important information about the expression of target genes, eliminating the need [...] Read more.
Circulating cfRNA in plasma has emerged as a fascinating area of research with potential applications in disease diagnosis, monitoring, and personalized medicine. Circulating RNA sequencing technology allows for the non-invasive collection of important information about the expression of target genes, eliminating the need for biopsies. This comprehensive review aims to provide a detailed overview of the current knowledge and advancements in the study of plasma cfRNA, focusing on its diverse landscape and biological functions, detection methods, its diagnostic and prognostic potential in various diseases, challenges, and future perspectives. Full article
28 pages, 8442 KiB  
Review
A Review on Submarine Geological Risks and Secondary Disaster Issues during Natural Gas Hydrate Depressurization Production
by Xianzhuang Ma, Yujing Jiang, Peng Yan, Hengjie Luan, Changsheng Wang, Qinglin Shan and Xianzhen Cheng
J. Mar. Sci. Eng. 2024, 12(5), 840; https://doi.org/10.3390/jmse12050840 (registering DOI) - 17 May 2024
Abstract
The safe and efficient production of marine natural gas hydrates faces the challenges of seabed geological risk issues. Geological risk issues can be categorized from weak to strong threats in four aspects: sand production, wellbore instability, seafloor subsidence, and submarine landslides, with the [...] Read more.
The safe and efficient production of marine natural gas hydrates faces the challenges of seabed geological risk issues. Geological risk issues can be categorized from weak to strong threats in four aspects: sand production, wellbore instability, seafloor subsidence, and submarine landslides, with the potential risk of natural gas leakage, and the geological risk problems that can cause secondary disasters dominated by gas eruptions and seawater intrusion. If the gas in a reservoir is not discharged in a smooth and timely manner during production, it can build up inside the formation to form super pore pressure leading to a sudden gas eruption when the overburden is damaged. There is a high risk of overburden destabilization around production wells, and reservoirs are prone to forming a connection with the seafloor resulting in seawater intrusion under osmotic pressure. This paper summarizes the application of field observation, experimental research, and numerical simulation methods in evaluating the stability problem of the seafloor surface. The theoretical model of multi-field coupling can be used to describe and evaluate the seafloor geologic risk issues during depressurization production, and the controlling equations accurately describing the characteristics of the reservoir are the key theoretical basis for evaluating the stability of the seafloor geomechanics. It is necessary to seek a balance between submarine formation stability and reservoir production efficiency in order to assess the optimal production and predict the region of plastic damage in the reservoir. Prediction and assessment allow measures to be taken at fixed points to improve reservoir mechanical stability with the numerical simulation method. Hydrate reservoirs need to be filled with gravel to enhance mechanical strength and permeability, and overburden need to be grouted to reinforce stability. Full article
16 pages, 563 KiB  
Article
Novel Automatic Classification of Human Adult Lung Alveolar Type II Cells Infected with SARS-CoV-2 through the Deep Transfer Learning Approach
by Turki Turki, Sarah Al Habib and Y-h. Taguchi
Mathematics 2024, 12(10), 1573; https://doi.org/10.3390/math12101573 (registering DOI) - 17 May 2024
Abstract
Transmission electron microscopy imaging provides a unique opportunity to inspect the detailed structure of infected lung cells with SARS-CoV-2. Unlike previous studies, this novel study aims to investigate COVID-19 classification at the lung cellular level in response to SARS-CoV-2. Particularly, differentiating between healthy [...] Read more.
Transmission electron microscopy imaging provides a unique opportunity to inspect the detailed structure of infected lung cells with SARS-CoV-2. Unlike previous studies, this novel study aims to investigate COVID-19 classification at the lung cellular level in response to SARS-CoV-2. Particularly, differentiating between healthy and infected human alveolar type II (hAT2) cells with SARS-CoV-2. Hence, we explore the feasibility of deep transfer learning (DTL) and introduce a highly accurate approach that works as follows: First, we downloaded and processed 286 images pertaining to healthy and infected hAT2 cells obtained from the electron microscopy public image archive. Second, we provided processed images to two DTL computations to induce ten DTL models. The first DTL computation employs five pre-trained models (including DenseNet201 and ResNet152V2) trained on more than one million images from the ImageNet database to extract features from hAT2 images. Then, it flattens and provides the output feature vectors to a trained, densely connected classifier with the Adam optimizer. The second DTL computation works in a similar manner, with a minor difference in that we freeze the first layers for feature extraction in pre-trained models while unfreezing and jointly training the next layers. The results using five-fold cross-validation demonstrated that TFeDenseNet201 is 12.37× faster and superior, yielding the highest average ACC of 0.993 (F1 of 0.992 and MCC of 0.986) with statistical significance ( from a t-test) compared to an average ACC of 0.937 (F1 of 0.938 and MCC of 0.877) for the counterpart (TFtDenseNet201), showing no significance results ( from a t-test). Full article
(This article belongs to the Special Issue Advanced Applications of Deep Learning Methods in Medical Diagnosis)
17 pages, 1504 KiB  
Article
Research on Deformation Safety Risk Warning of Super-Large and Ultra-Deep Foundation Pits Based on Long Short-Term Memory
by Yanhui Guo, Chengjin Li, Ming Yan, Rui Ma and Wei Bi
Buildings 2024, 14(5), 1464; https://doi.org/10.3390/buildings14051464 (registering DOI) - 17 May 2024
Abstract
This paper proposes transforming actual monitoring data into risk quantities and establishing a Long Short-Term Memory (LSTM) safety risk warning model for predicting the deformation of super-large and ultra-deep foundation pits in river–round gravel strata based on safety evaluation methods. Using this model, [...] Read more.
This paper proposes transforming actual monitoring data into risk quantities and establishing a Long Short-Term Memory (LSTM) safety risk warning model for predicting the deformation of super-large and ultra-deep foundation pits in river–round gravel strata based on safety evaluation methods. Using this model, short-term deformation predictions at various monitoring points of the foundation pits are made and compared with monitoring data. The results from the LSTM safety risk warning model indicate an absolute error range between the predicted deformation values and on-site monitoring values of −0.24 to 0.16 mm, demonstrating the model’s accuracy in predicting pit deformation. Additionally, calculations reveal that both the overall risk level based on on-site monitoring data and the overall safety risk level based on predicted data are classified as level four. The acceptance criteria for the overall risk level of the foundation pit are defined as “unacceptable and requiring decision-making”, with the risk warning control scheme being “requiring decision-making, formulation of control, and warning measures”. These research findings offer valuable insights for predicting and warning about safety risks in similar foundation pit engineering projects. Full article
13 pages, 768 KiB  
Article
From Connectivity to Controllability: Unraveling the Brain Biomarkers of Major Depressive Disorder
by Chunyu Pan, Ying Ma, Lifei Wang, Yan Zhang, Fei Wang and Xizhe Zhang
Brain Sci. 2024, 14(5), 509; https://doi.org/10.3390/brainsci14050509 (registering DOI) - 17 May 2024
Abstract
Major Depressive Disorder (MDD) is a significant neurological condition associated with aberrations in brain functional networks. Traditional studies have predominantly analyzed these from a network topology perspective. However, given the brain’s dynamic and complex nature, exploring its mechanisms from a network control standpoint [...] Read more.
Major Depressive Disorder (MDD) is a significant neurological condition associated with aberrations in brain functional networks. Traditional studies have predominantly analyzed these from a network topology perspective. However, given the brain’s dynamic and complex nature, exploring its mechanisms from a network control standpoint provides a fresh and insightful framework. This research investigates the integration of network controllability and machine learning to pinpoint essential biomarkers for MDD using functional magnetic resonance imaging (fMRI) data. By employing network controllability methods, we identify crucial brain regions that are instrumental in facilitating transitions between brain states. These regions demonstrate the brain’s ability to navigate various functional states, emphasizing the utility of network controllability metrics as potential biomarkers. Furthermore, these metrics elucidate the complex dynamics of MDD and support the development of precision medicine strategies that incorporate machine learning to improve the precision of diagnostics and the efficacy of treatments. This study underscores the value of merging machine learning with network neuroscience to craft personalized interventions that align with the unique pathological profiles of individuals, ultimately enhancing the management and treatment of MDD. Full article
(This article belongs to the Special Issue Brain Network Connectivity Analysis in Neuroscience)
17 pages, 4095 KiB  
Article
Epithelial Cell Adhesion Molecule (EpCAM) Expression in Human Tumors: A Comparison with Pan-Cytokeratin and TROP2 in 14,832 Tumors
by Anne Menz, Nora Lony, Maximilian Lennartz, Sebastian Dwertmann Rico, Ria Schlichter, Simon Kind, Viktor Reiswich, Florian Viehweger, David Dum, Andreas M. Luebke, Martina Kluth, Natalia Gorbokon, Claudia Hube-Magg, Christian Bernreuther, Ronald Simon, Till S. Clauditz, Guido Sauter, Andrea Hinsch, Frank Jacobsen, Andreas H. Marx, Stefan Steurer, Sarah Minner, Eike Burandt, Till Krech, Patrick Lebok and Sören Weidemannadd Show full author list remove Hide full author list
Diagnostics 2024, 14(10), 1044; https://doi.org/10.3390/diagnostics14101044 (registering DOI) - 17 May 2024
Abstract
EpCAM is expressed in many epithelial tumors and is used for the distinction of malignant mesotheliomas from adenocarcinomas and as a surrogate pan-epithelial marker. A tissue microarray containing 14,832 samples from 120 different tumor categories was analyzed by immunohistochemistry. EpCAM staining was compared [...] Read more.
EpCAM is expressed in many epithelial tumors and is used for the distinction of malignant mesotheliomas from adenocarcinomas and as a surrogate pan-epithelial marker. A tissue microarray containing 14,832 samples from 120 different tumor categories was analyzed by immunohistochemistry. EpCAM staining was compared with TROP2 and CKpan. EpCAM staining was detectable in 99 tumor categories. Among 78 epithelial tumor types, the EpCAM positivity rate was ≥90% in 60 categories—including adenocarcinomas, neuroendocrine neoplasms, and germ cell tumors. EpCAM staining was the lowest in hepatocellular carcinomas, adrenocortical tumors, renal cell neoplasms, and in poorly differentiated carcinomas. A comparison of EpCAM and CKpan staining identified a high concordance but EpCAM was higher in testicular seminomas and neuroendocrine neoplasms and CKpan in hepatocellular carcinomas, mesotheliomas, and poorly differentiated non-neuroendocrine tumors. A comparison of EpCAM and TROP2 revealed a higher rate of TROP2 positivity in squamous cell carcinomas and lower rates in many gastrointestinal adenocarcinomas, testicular germ cell tumors, neuroendocrine neoplasms, and renal cell tumors. These data confirm EpCAM as a surrogate epithelial marker for adenocarcinomas and its diagnostic utility for the distinction of malignant mesotheliomas. In comparison to CKpan and TROP2 antibodies, EpCAM staining is particularly common in seminomas and in neuroendocrine neoplasms. Full article
(This article belongs to the Section Pathology and Molecular Diagnostics)
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14 pages, 3108 KiB  
Article
How Do Zooplankton Communities Respond to Environmental Factors across the Subsidence Wetlands Created by Underground Coal Mining in the North China Plain?
by Yue Liang, Jianjun Huo, Weiqiang Li, Yutao Wang, Guangyao Wang and Chunlin Li
Diversity 2024, 16(5), 304; https://doi.org/10.3390/d16050304 (registering DOI) - 17 May 2024
Abstract
The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental [...] Read more.
The degradation and loss of natural wetlands has caused severe crises for wetland taxa. Meanwhile, constructed wetlands are expanding significantly and facing dramatic environmental changes. Exploring the responses of wetland organisms, particularly zooplankton, may have important implications for the management of wetlands. Environmental and zooplankton samples were collected from 34 subsidence wetlands created by underground coal mining across the North China Plain in August 2021. We used generalized linear models and redundancy analysis to test zooplankton responses to environmental variables, with the relative importance quantified by variation partitioning. We identified 91 species, divided into 7 functional groups, with the highest density of rotifer filter feeders (RF, 2243.4 ± 499.4 ind./L). Zooplankton species richness was negatively correlated with electrical conductivity (EC), chlorophyll-a, total phosphorus, and pH. The Shannon–Weiner and Pielou evenness indices were positively correlated with transparency and negatively correlated with the photovoltaic panel area (AS). Rotifer predators (RCs) and RF densities were positively correlated with cropland area and dissolved oxygen, but negatively correlated with AS. Small crustacean filter feeders positively correlated with AS, whereas medium crustacean feeders (MCFs) positively correlated with EC. AS was the most critical variable affecting the zooplankton community. Our study showed that the spatial pattern of zooplankton communities was shaped by environmental heterogeneity across the subsidence wetlands, providing implications for the management and conservation of these constructed wetlands. Full article
(This article belongs to the Section Freshwater Biodiversity)
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14 pages, 1063 KiB  
Article
Assessment of Cognitive Function in Romanian Patients with Chronic Alcohol Consumption
by Shandiz Morega, Claudiu-Marinel Ionele, Mihaela-Andreea Podeanu, Dan-Nicolae Florescu and Ion Rogoveanu
Gastroenterol. Insights 2024, 15(2), 433-446; https://doi.org/10.3390/gastroent15020031 (registering DOI) - 17 May 2024
Abstract
Alcoholism presents a significant health concern with notable socioeconomic implications. Alcohol withdrawal syndrome (AWS) can manifest when individuals cease or drastically reduce their alcohol consumption after prolonged use. Non-alcoholic fatty liver disease (NAFLD) is characterized by substantial lipid accumulation in the liver cells [...] Read more.
Alcoholism presents a significant health concern with notable socioeconomic implications. Alcohol withdrawal syndrome (AWS) can manifest when individuals cease or drastically reduce their alcohol consumption after prolonged use. Non-alcoholic fatty liver disease (NAFLD) is characterized by substantial lipid accumulation in the liver cells of individuals with no history of alcohol consumption. There is evidence suggesting an association between cognitive impairment and both conditions. This study aimed to evaluate cognitive impairment in patients with NAFLD and AWS using the Mini-Mental State Examination (MMSE). This study involved 120 patients admitted to two hospitals in Craiova, Romania. Results indicated that patients with NAFLD did not exhibit cognitive impairment as measured by MMSE (Mean = 29.27, SD = 0.785). Conversely, patients with AWS showed more pronounced cognitive dysfunction, with a mean MMSE score at admission of 16.60 ± 4.097 and 24.60 ± 2.832 after 2 weeks under treatment with Vitamins B1 and B6 and Cerebrolysin. Additionally, our findings suggested that cognitive dysfunction among alcohol consumers was correlated with the severity of clinical symptoms, as demonstrated by the severity of tremors in our study. The two-week period under treatment and alcohol withdrawal was insufficient for cognitive function to return to normal levels. Observational studies on longer periods of time are advised. Full article
(This article belongs to the Special Issue Novelties in Diagnostics and Therapeutics in Hepatology: 2nd Edition)
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11 pages, 1490 KiB  
Article
The Relationship between the Ewing Test, Sudoscan Cardiovascular Autonomic Neuropathy Score and Cardiovascular Risk Score Calculated with SCORE2-Diabetes
by Andra-Elena Nica, Emilia Rusu, Carmen Dobjanschi, Florin Rusu, Claudia Sivu, Oana Andreea Parlițeanu and Gabriela Radulian
Medicina 2024, 60(5), 828; https://doi.org/10.3390/medicina60050828 (registering DOI) - 17 May 2024
Abstract
Background and Objectives: Cardiac autonomic neuropathy (CAN) is a severe complication of diabetes mellitus (DM) strongly linked to a nearly five-fold higher risk of cardiovascular mortality. Patients with Type 2 Diabetes Mellitus (T2DM) are a significant cohort in which these assessments have [...] Read more.
Background and Objectives: Cardiac autonomic neuropathy (CAN) is a severe complication of diabetes mellitus (DM) strongly linked to a nearly five-fold higher risk of cardiovascular mortality. Patients with Type 2 Diabetes Mellitus (T2DM) are a significant cohort in which these assessments have particular relevance to the increased cardiovascular risk inherent in the condition. Materials and Methods: This study aimed to explore the subtle correlation between the Ewing test, Sudoscan-cardiovascular autonomic neuropathy score, and cardiovascular risk calculated using SCORE 2 Diabetes in individuals with T2DM. The methodology involved detailed assessments including Sudoscan tests to evaluate sudomotor function and various cardiovascular reflex tests (CART). The cohort consisted of 211 patients diagnosed with T2DM with overweight or obesity without established ASCVD, aged between 40 to 69 years. Results: The prevalence of CAN in our group was 67.2%. In the study group, according SCORE2-Diabetes, four patients (1.9%) were classified with moderate cardiovascular risk, thirty-five (16.6%) with high risk, and one hundred seventy-two (81.5%) with very high cardiovascular risk. Conclusions: On multiple linear regression, the SCORE2-Diabetes algorithm remained significantly associated with Sudoscan CAN-score and Sudoscan Nephro-score and Ewing test score. Testing for the diagnosis of CAN in very high-risk patients should be performed because approximately 70% of them associate CAN. Increased cardiovascular risk is associated with sudomotor damage and that Sudoscan is an effective and non-invasive measure of identifying such risk. Full article
(This article belongs to the Special Issue Advances in Clinical Diabetes, Obesity, and Metabolic Diseases)
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28 pages, 3121 KiB  
Article
A Stochastic Decision-Making Tool Suite for Distributed Energy Resources Integration in Energy Markets
by Sergio Cantillo-Luna, Ricardo Moreno-Chuquen, David Celeita and George J. Anders
Energies 2024, 17(10), 2419; https://doi.org/10.3390/en17102419 (registering DOI) - 17 May 2024
Abstract
Energy markets are crucial for integrating Distributed Energy Resources (DER) into modern power grids. However, this integration presents challenges due to the inherent variability and decentralized nature of DERs, as well as poorly adapted regulatory environments. This paper proposes a medium-term decision-making approach [...] Read more.
Energy markets are crucial for integrating Distributed Energy Resources (DER) into modern power grids. However, this integration presents challenges due to the inherent variability and decentralized nature of DERs, as well as poorly adapted regulatory environments. This paper proposes a medium-term decision-making approach based on a comprehensive suite of computational tools for integrating DERs into Colombian energy markets. The proposed framework consists of modular tools that are aligned with the operation of a Commercial Virtual Power Plant (CVPP). The tools aim to optimize participation in bilateral contracts and short-term energy markets. They use forecasting, uncertainty management, and decision-making modules to create an optimal portfolio of DER assets. The suite’s effectiveness and applicability are demonstrated and analyzed through its implementation with heterogeneous DER assets across various operational scenarios. Full article
(This article belongs to the Section C: Energy Economics and Policy)
27 pages, 11184 KiB  
Article
Exploring the Multi-Sensory Coupling Relationship of Open Space on a Winter Campus
by Shumin Li, Yijing Zhang, Qiqi Zhang, Pingting Xue, Hao Wu, Wenjian Xu, Jing Ye, Lingyan Chen, Tianyou He and Yushan Zheng
Forests 2024, 15(5), 876; https://doi.org/10.3390/f15050876 (registering DOI) - 17 May 2024
Abstract
Exploring the combined effects of multisensory interactions in open spaces can help improve the comfort of campus environments. Nine typical spaces on a university campus in Fuzhou were selected for this study. Subjects perceived the environment and then completed an on-site subjective questionnaire. [...] Read more.
Exploring the combined effects of multisensory interactions in open spaces can help improve the comfort of campus environments. Nine typical spaces on a university campus in Fuzhou were selected for this study. Subjects perceived the environment and then completed an on-site subjective questionnaire. At the same time, meteorological data (global radiation, air temperature, globe temperature, wind speed, relative humidity, and illumination intensity) were measured to determine the interactions between visual and acoustic and thermal perceptions. Differences in the meteorological parameters between the measuring points were described using a one-way ANOVA and Tukey’s post hoc test, and a chi-square test of independence was used to determine significant associations between thermal, acoustic, and visual comfort, which in turn led to the study of interactions between visual, acoustic, and thermal comfort using a two-way ANOVA. The following conclusions were drawn: (1) the Thermal Comfort Vote (TCV) increased with the increasing Acoustic Comfort Vote (ACV) at all levels of thermal stress. (2) The highest and lowest Acoustic Sensation Vote (ASV) values for each sound type were derived from either “slightly cold” or “warm” conditions. Both the Thermal Comfort Vote (TCV) and the Acoustic Comfort Vote (ACV) were positively correlated. (3) When “neutral”, the Thermal Sensation Vote (TSV) increased with increasing illumination intensity (LUX). (4) The Sunlight Sensation Vote (SSV) increased with the increasing Universal Thermal Climate Index (UTCI) when illumination intensity (LUX) was moderate and bright. (5) The highest and lowest Acoustic Sensation Vote (ASV) values for each sound type came from either “slightly cold” or “warm” conditions. Full article
(This article belongs to the Section Urban Forestry)
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13 pages, 2878 KiB  
Article
Changes in Collagen across Pork Tenderloin during Marination with Rosehip Nanocapsules
by Araceli Ulloa-Saavedra, Samantha Jardon-Xicotencatl, María L. Zambrano-Zaragoza, Sergio A. Ojeda-Piedra, María de los Angeles Cornejo-Villegas, Claudia I. García-Betanzos and Susana E. Mendoza-Elvira
Appl. Sci. 2024, 14(10), 4276; https://doi.org/10.3390/app14104276 (registering DOI) - 17 May 2024
Abstract
The objective of this study was to prepare zein–gum Arabic nanocapsules with rosehip oil (NC-RH), apply them to pork tenderloin, and analyze the changes in collagen structure under different conditions (pH 6.5 and 4.0) and temperatures (25 °C and 4 °C). NC-RHs were [...] Read more.
The objective of this study was to prepare zein–gum Arabic nanocapsules with rosehip oil (NC-RH), apply them to pork tenderloin, and analyze the changes in collagen structure under different conditions (pH 6.5 and 4.0) and temperatures (25 °C and 4 °C). NC-RHs were prepared using the nanoprecipitation method. Nanocapsules had a particle size of 423 ± 4.1 nm, a polydispersity index of 0.125 ± 3.1, a zeta potential value of −20.1 ± 0.41 mV, an encapsulation efficiency of 75.84 ± 3.1%, and backscattering (ΔBS = 10%); the antioxidant capacity of DPPH was 1052 ± 4.2 µM Eq Trolox and the radical scavenging capacity was 84 ± 0.4%. The dispersions exhibited Newtonian behavior at 25 °C and 4 °C. Incorporating NC-RH into acid marination benefited the tenderness, water-holding capacity, and collagen swelling, and favored changes in myofibrillar proteins corroborated with histological tests. The conditions with the best changes in pork tenderloin were a pH of 4.0 at 4 °C with an NC-RH-administered 11.47 ± 2.2% collagen area. Incorporating rosehip nanocapsules modifies collagen fibers and can be applied in pork marinades to increase the shelf life of a functional product. Full article
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14 pages, 530 KiB  
Article
Influence of Hf Doping on the Oxygen Behaviors on ZrCo(110) Surface Using First-Principles Calculation
by Ruijun Qian, Habibullah, Meitong Ye, Wanglai Cen and Chaoling Wu
Materials 2024, 17(10), 2424; https://doi.org/10.3390/ma17102424 (registering DOI) - 17 May 2024
Abstract
ZrCo alloy is easily poisoned by impurity gases such as O2, CO, and CO2, resulting in a deterioration in hydrogen storage performance. In this study, we conducted a comprehensive investigation into the adsorption and dissociation characteristics of oxygen on [...] Read more.
ZrCo alloy is easily poisoned by impurity gases such as O2, CO, and CO2, resulting in a deterioration in hydrogen storage performance. In this study, we conducted a comprehensive investigation into the adsorption and dissociation characteristics of oxygen on the ZrCo(110) surface using first-principles calculations. Previous studies indicated that the anti-disproportionation properties of ZrCo alloy can be significantly improved by Hf substitution, but the effect of Hf doping on the anti-poisoning properties has not been reported. We also examined the effect of Hf doping on the adsorption, dissociation, and diffusion characteristics of oxygen. It is found that on the ZrCo(110) surface, O2 molecules are easily dissociated and then stably adsorbed at the hollow site. Oxygen atoms will fill the surface preferentially and then diffuse inward. The doping of Hf has an insignificant impact on the adsorption or dissociation behavior of oxygen in comparison to the pure ZrCo surface. However, a notable observation is that the doping of Hf resulted in a reduction in the diffusion barrier for oxygen from the surface to the subsurface by 0.61 eV. Consequently, our study suggests that doping Hf is not an advisable strategy for improving the ZrCo(110) surface’s resistance to O2 poisoning because of improved oxygen permeability. Full article
(This article belongs to the Section Metals and Alloys)
17 pages, 4118 KiB  
Article
Transcriptome Analysis of Sesame (Sesamum indicum L.) Reveals the LncRNA and mRNA Regulatory Network Responding to Low Nitrogen Stress
by Pengyu Zhang, Feng Li, Yuan Tian, Dongyong Wang, Jinzhou Fu, Yasi Rong, Yin Wu, Tongmei Gao and Haiyang Zhang
Int. J. Mol. Sci. 2024, 25(10), 5501; https://doi.org/10.3390/ijms25105501 (registering DOI) - 17 May 2024
Abstract
Nitrogen is one of the important factors restricting the development of sesame planting and industry in China. Cultivating sesame varieties tolerant to low nitrogen is an effective way to solve the problem of crop nitrogen deficiency. To date, the mechanism of low nitrogen [...] Read more.
Nitrogen is one of the important factors restricting the development of sesame planting and industry in China. Cultivating sesame varieties tolerant to low nitrogen is an effective way to solve the problem of crop nitrogen deficiency. To date, the mechanism of low nitrogen tolerance in sesame has not been elucidated at the transcriptional level. In this study, two sesame varieties Zhengzhi HL05 (ZZ, nitrogen efficient) and Burmese prolific (MD, nitrogen inefficient) in low nitrogen were used for RNA-sequencing. A total of 3964 DEGs (differentially expressed genes) and 221 DELs (differentially expressed lncRNAs) were identified in two sesame varieties at 3d and 9d after low nitrogen stress. Among them, 1227 genes related to low nitrogen tolerance are mainly located in amino acid metabolism, starch and sucrose metabolism and secondary metabolism, and participate in the process of transporter activity and antioxidant activity. In addition, a total of 209 pairs of lncRNA-mRNA were detected, including 21 pairs of trans and 188 cis. WGCNA (weighted gene co-expression network analysis) analysis divided the obtained genes into 29 modules; phenotypic association analysis identified three low-nitrogen response modules; through lncRNA-mRNA co-expression network, a number of hub genes and cis/trans-regulatory factors were identified in response to low-nitrogen stress including GS1-2 (glutamine synthetase 1–2), PAL (phenylalanine ammonia-lyase), CHS (chalcone synthase, CHS), CAB21 (chlorophyll a-b binding protein 21) and transcription factors MYB54, MYB88 and NAC75 and so on. As a trans regulator, lncRNA MSTRG.13854.1 affects the expression of some genes related to low nitrogen response by regulating the expression of MYB54, thus responding to low nitrogen stress. Our research is the first to provide a more comprehensive understanding of DEGs involved in the low nitrogen stress of sesame at the transcriptome level. These results may reveal insights into the molecular mechanisms of low nitrogen tolerance in sesame and provide diverse genetic resources involved in low nitrogen tolerance research. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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15 pages, 5947 KiB  
Article
Pathogenicity Prediction of Gene Fusion in Structural Variations: A Knowledge Graph-Infused Explainable Artificial Intelligence (XAI) Framework
by Katsuhiko Murakami, Shin-ichiro Tago, Sho Takishita, Hiroaki Morikawa, Rikuhiro Kojima, Kazuaki Yokoyama, Miho Ogawa, Hidehito Fukushima, Hiroyuki Takamori, Yasuhito Nannya, Seiya Imoto and Masaru Fuji
Cancers 2024, 16(10), 1915; https://doi.org/10.3390/cancers16101915 (registering DOI) - 17 May 2024
Abstract
When analyzing cancer sample genomes in clinical practice, many structural variants (SVs), other than single nucleotide variants (SNVs), have been identified. To identify driver variants, the leading candidates must be narrowed down. When fusion genes are involved, selection is particularly difficult, and highly [...] Read more.
When analyzing cancer sample genomes in clinical practice, many structural variants (SVs), other than single nucleotide variants (SNVs), have been identified. To identify driver variants, the leading candidates must be narrowed down. When fusion genes are involved, selection is particularly difficult, and highly accurate predictions from AI is important. Furthermore, we also wanted to determine how the prediction can make more reliable diagnoses. Here, we developed an explainable AI (XAI) suitable for SVs with gene fusions, based on the XAI technology we previously developed for the prediction of SNV pathogenicity. To cope with gene fusion variants, we added new data to the previous knowledge graph for SVs and we improved the algorithm. Its prediction accuracy was as high as that of existing tools. Moreover, our XAI could explain the reasons for these predictions. We used some variant examples to demonstrate that the reasons are plausible in terms of pathogenic basic mechanisms. These results can be seen as a hopeful step toward the future of genomic medicine, where efficient and correct decisions can be made with the support of AI. Full article
(This article belongs to the Section Cancer Informatics and Big Data)
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28 pages, 4388 KiB  
Article
Regional Pulmonary Ventilation Assessment Method and System Based on Impedance Sensing Information from the Pentapulmonary Lobes
by Yapeng Zhang, Chengxin Song, Wei He, Qian Zhang, Pengcheng Zhao and Jingang Wang
Sensors 2024, 24(10), 3202; https://doi.org/10.3390/s24103202 (registering DOI) - 17 May 2024
Abstract
Regional lung ventilation assessment is a critical tool for the early detection of lung diseases and postoperative evaluation. Biosensor-based impedance measurements, known for their non-invasive nature, among other benefits, have garnered significant attention compared to traditional detection methods that utilize pressure sensors. However, [...] Read more.
Regional lung ventilation assessment is a critical tool for the early detection of lung diseases and postoperative evaluation. Biosensor-based impedance measurements, known for their non-invasive nature, among other benefits, have garnered significant attention compared to traditional detection methods that utilize pressure sensors. However, solely utilizing overall thoracic impedance fails to accurately capture changes in regional lung air volume. This study introduces an assessment method for lung ventilation that utilizes impedance data from the five lobes, develops a nonlinear model correlating regional impedance with lung air volume, and formulates an approach to identify regional ventilation obstructions based on impedance variations in affected areas. The electrode configuration for the five lung lobes was established through numerical simulations, revealing a power–function nonlinear relationship between regional impedance and air volume changes. An analysis of 389 pulmonary function tests refined the equations for calculating pulmonary function parameters, taking into account individual differences. Validation tests on 30 cases indicated maximum relative errors of 0.82% for FVC and 0.98% for FEV1, all within the 95% confidence intervals. The index for assessing regional ventilation impairment was corroborated by CT scans in 50 critical care cases, with 10 validation trials showing agreement with CT lesion localization results. Full article
15 pages, 637 KiB  
Article
Incorporating Symbolic Discrete Controller Synthesis into a Virtual Robot Experimental Platform: An Implementation with Collaborative Unmanned Aerial Vehicle Robots
by Mete Özbaltan and Serkan Çaşka
Drones 2024, 8(5), 206; https://doi.org/10.3390/drones8050206 (registering DOI) - 17 May 2024
Abstract
We introduce a modeling framework aimed at incorporating symbolic discrete controller synthesis (DCS) into a virtual robot experimental platform. This framework involves symbolically representing the behaviors of robotic systems along with their control objectives using synchronous programming techniques. We employed DCS algorithms through [...] Read more.
We introduce a modeling framework aimed at incorporating symbolic discrete controller synthesis (DCS) into a virtual robot experimental platform. This framework involves symbolically representing the behaviors of robotic systems along with their control objectives using synchronous programming techniques. We employed DCS algorithms through the reactive synchronous environment ReaX to generate controllers that fulfill specified objectives. These resulting controllers were subsequently deployed on the virtual robot experimental platform Simscape. To demonstrate and validate our approach, we provide an implementation example involving collaborative UAV robots. Full article
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22 pages, 3353 KiB  
Article
Enhancing Water Purification by Integrating Titanium Dioxide Nanotubes into Polyethersulfone Membranes for Improved Hydrophilicity and Anti-Fouling Performance
by Ayesha Bilal, Muhammad Yasin, Faheem Hassan Akhtar, Mazhar Amjad Gilani, Hamad Alhmohamadi, Mohammad Younas, Azeem Mushtaq, Muhammad Aslam, Mehdi Hassan, Rab Nawaz, Aqsha Aqsha, Jaka Sunarso, Muhammad Roil Bilad and Asim Laeeq Khan
Membranes 2024, 14(5), 116; https://doi.org/10.3390/membranes14050116 (registering DOI) - 17 May 2024
Abstract
Water pollution remains a critical concern, one necessitated by rapidly increasing industrialization and urbanization. Among the various strategies for water purification, membrane technology stands out, with polyethersulfone (PES) often being the material of choice due to its robust mechanical properties, thermal stability, and [...] Read more.
Water pollution remains a critical concern, one necessitated by rapidly increasing industrialization and urbanization. Among the various strategies for water purification, membrane technology stands out, with polyethersulfone (PES) often being the material of choice due to its robust mechanical properties, thermal stability, and chemical resistance. However, PES-based membranes tend to exhibit low hydrophilicity, leading to reduced flux and poor anti-fouling performance. This study addresses these limitations by incorporating titanium dioxide nanotubes (TiO2NTs) into PES nanofiltration membranes to enhance their hydrophilic properties. The TiO2NTs, characterized through FTIR, XRD, BET, and SEM, were embedded in PES at varying concentrations using a non-solvent induced phase inversion (NIPS) method. The fabricated mixed matrix membranes (MMMs) were subjected to testing for water permeability and solute rejection capabilities. Remarkably, membranes with a 1 wt.% TiO2NT loading displayed a significant increase in pure water flux, from 36 to 72 L m2 h−1 bar−1, a 300-fold increase in selectivity compared to the pristine sample, and a dye rejection of 99%. Furthermore, long-term stability tests showed only a slight reduction in permeate flux over a time of 36 h, while dye removal efficiency was maintained, thus confirming the membrane’s stability. Anti-fouling tests revealed a 93% flux recovery ratio, indicating excellent resistance to fouling. These results suggest that the inclusion of TiO2 NTs offers a promising avenue for the development of efficient and stable anti-fouling PES-based membranes for water purification. Full article
(This article belongs to the Special Issue Membrane-Based Technologies for Water/Wastewater Treatment)
13 pages, 573 KiB  
Review
Delayed Enhancement in Cardiac CT: A Potential Alternative to Cardiac MRI? Technical Updates and Clinical Considerations
by Domenico De Stefano, Federica Vaccarino, Domiziana Santucci, Marco Parillo, Antonio Nenna, Francesco Loreni, Chiara Ferrisi, Omar Giacinto, Raffaele Barbato, Ciro Mastroianni, Mario Lusini, Massimo Chello, Bruno Beomonte Zobel, Rosario Francesco Grasso and Eliodoro Faiella
Appl. Sci. 2024, 14(10), 4275; https://doi.org/10.3390/app14104275 (registering DOI) - 17 May 2024
Abstract
Despite cardiac magnetic resonance (CMR) with late gadolinium enhancement (LGE) being the current gold standard for non-invasive myocardial characterization and fibrosis quantification, its accessibility is limited, particularly in acute settings and in certain patient populations with contraindications to magnetic resonance imaging. Late iodine [...] Read more.
Despite cardiac magnetic resonance (CMR) with late gadolinium enhancement (LGE) being the current gold standard for non-invasive myocardial characterization and fibrosis quantification, its accessibility is limited, particularly in acute settings and in certain patient populations with contraindications to magnetic resonance imaging. Late iodine enhancement (LIE) in computed tomography (CT) imaging has emerged as a potential alternative, capitalizing on the similarities in the contrast kinetics between gadolinium and iodinated contrast agents. Studies have investigated LIE-CT’s effectiveness in myocardial infarction (MI) detection, revealing promising outcomes alongside some disparities compared to LGE-CMR. LIE-CT also proves beneficial in diagnosing non-ischemic heart diseases such as myocarditis, hypertrophic cardiomyopathy, and sarcoidosis. While LIE-CT demonstrates good accuracy in detecting certain myocardial pathologies, including acute MI and chronic fibrotic changes, it has limitations, such as the inability to detect diffuse myocardial enhancement. Nonetheless, thanks to the availability of optimized protocols with minimal radiation doses and contrast medium administration, integrating LIE-CT into cardiac CT protocols could enhance its clinical utility, particularly in acute settings, providing valuable prognostic and management insights across a spectrum of cardiac ischemic and non-ischemic conditions. Full article
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20 pages, 820 KiB  
Article
Electric Vehicle Supply Chain Risk Assessment Based on Combined Weights and an Improved Matter-Element Extension Model: The Chinese Case
by Huixin Liu and Xiang Hao
Sustainability 2024, 16(10), 4249; https://doi.org/10.3390/su16104249 (registering DOI) - 17 May 2024
Abstract
In order to meet energy and environmental challenges, many countries will implement the replacement of fuel vehicles for the future clean energy transition; so, the number of electric vehicles (EVs) operating in cities will grow significantly. It is crucial to assess the risks [...] Read more.
In order to meet energy and environmental challenges, many countries will implement the replacement of fuel vehicles for the future clean energy transition; so, the number of electric vehicles (EVs) operating in cities will grow significantly. It is crucial to assess the risks of the electric vehicle supply chain (EVSC) and prevent them. Based on this, this paper proposes an EVSC risk research framework with combined weights and an improved matter-element extension model: (i) Firstly, the EVSC evaluation index system is constructed from the six stages of supply chain planning, sales, procurement, manufacturing, distribution, after-sales, and external risks. (ii) The subjective and objective weights are calculated by the decision laboratory method and entropy weight method, respectively, and then the minimum deviation method is used for a combined design to overcome the defects of a single method. (iii) An improved matter-element extension model (MEEM) is constructed by introducing asymmetric proximity degree and risk bias. (iv) The model is applied to a case study and its feasibility and superiority are verified through sensitivity analysis and comparative analysis. The final results show that the method and framework proposed in this paper are in line with EVSC risk assessment standards and superior to other models, which can help EVSC managers to identify potential risks, formulate appropriate risk prevention measures, promote the stable development of electric vehicles, and provide a reference for the development of energy and environment. Full article
19 pages, 1561 KiB  
Article
Generic Carbon Budget Model for Assessing National Carbon Dynamics toward Carbon Neutrality: A Case Study of South Korea
by Youngjin Ko, Cholho Song, Max Fellows, Moonil Kim, Mina Hong, Werner A. Kurz, Juha Metsaranta, Jiwon Son and Woo-Kyun Lee
Forests 2024, 15(5), 877; https://doi.org/10.3390/f15050877 (registering DOI) - 17 May 2024
Abstract
Forests play a crucial role in South Korea’s carbon neutrality goal and require sustainable management strategies to overcome age-class imbalances. The Generic Carbon Budget Model (GCBM) offers a spatially explicit approach to simulate carbon dynamics at a regional scale. In this study, we [...] Read more.
Forests play a crucial role in South Korea’s carbon neutrality goal and require sustainable management strategies to overcome age-class imbalances. The Generic Carbon Budget Model (GCBM) offers a spatially explicit approach to simulate carbon dynamics at a regional scale. In this study, we utilized the GCBM to analyze the carbon budget of forests in South Korea and produce spatiotemporal maps for distribution of the forest biomass. The growth parameters of five representative tree species (Pinus densiflora Siebold & Zucc., Larix kaempferi Carr., Pinus koraiensis Siebold & Zucc., Quercus mongolica Fisch. ex Ledeb., Quercus variabilis Blume), which are the main species in South Korea, were used to operate the model. In addition, spatial data for harvest and thinning management activities were used to analyze the effects of anthropogenic activities. In 2020, the aboveground and belowground biomass were 112.98 and 22.84 tC ha−1, and the net primary productivity was 8.30 tC ha−1 year−1. These results were verified using comparison with statistics, a literature review, and MODIS NPP. In particular, broadleaf is higher than conifer forest in net primary production. The Canadian GCBM with Korean forest inventory data and yield curves successfully estimated the aboveground and belowground biomass of forests in South Korea. Our study demonstrates that these estimates can be mapped in detail, thereby supporting decision-makers and stakeholders in analyzing the carbon budget of the forests in South Korea and developing novel schemes that can serve regional and national aims related to forest management, wood utilization, and ecological preservation. Further studies are needed to improve the initialization of dead organic matter pools, given the large-scale afforestation efforts in recent decades that have established South Korea’s forests on predominantly non-forest sites. Full article
(This article belongs to the Section Forest Inventory, Modeling and Remote Sensing)
16 pages, 1544 KiB  
Article
Fractional-Order Least-Mean-Square-Based Active Control for an Electro–Hydraulic Composite Engine Mounts
by Lida Wang, Rongjun Ding, Kan Liu, Jun Yang, Xingwu Ding and Renping Li
Electronics 2024, 13(10), 1974; https://doi.org/10.3390/electronics13101974 (registering DOI) - 17 May 2024
Abstract
For the vibration of automobile powertrain, this paper designs electro–hydraulic composite engine mounts. Subsequently, the dynamic characteristics of the hydraulic mount and the electromagnetic actuator were analyzed and experimentally studied separately. Due to the strong nonlinearity of the hybrid electromechanical engine mount, a [...] Read more.
For the vibration of automobile powertrain, this paper designs electro–hydraulic composite engine mounts. Subsequently, the dynamic characteristics of the hydraulic mount and the electromagnetic actuator were analyzed and experimentally studied separately. Due to the strong nonlinearity of the hybrid electromechanical engine mount, a Fractional-Order Least-Mean-Square (FGO-LMS) algorithm was proposed to model its secondary path identification. To validate the vibration reduction effect, a rapid control prototype test platform was established, and vibration active control experiments were conducted based on the Multiple–Input Multiple–Output Filter-x Least-Mean-Square (MIMO-FxLMS) algorithm. The results indicate that, under various operating conditions, the vibration transmitted to the chassis from the powertrain was significantly suppressed. Full article
(This article belongs to the Special Issue Control and Optimization of Power Converters and Drives)

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