The 2023 MDPI Annual Report has
been released!
 
15 pages, 1662 KiB  
Article
Phylogenetic Relationships and Evolution of the Genus Eganvirus (186-Type) Yersinia pestis Bacteriophages
by Jin Guo, Youhong Zhong, Yiting Wang, Pan Liu, Haixiao Jin, Yumeng Wang, Liyuan Shi, Peng Wang and Wei Li
Viruses 2024, 16(5), 748; https://doi.org/10.3390/v16050748 (registering DOI) - 08 May 2024
Abstract
Plague is an endemic infectious disease caused by Yersinia pestis. In this study, we isolated fourteen phages with similar sequence arrangements to phage 186; these phages exhibited different lytic abilities in Enterobacteriaceae strains. To illustrate the phylogenetic relationships and evolutionary relationships between [...] Read more.
Plague is an endemic infectious disease caused by Yersinia pestis. In this study, we isolated fourteen phages with similar sequence arrangements to phage 186; these phages exhibited different lytic abilities in Enterobacteriaceae strains. To illustrate the phylogenetic relationships and evolutionary relationships between previously designated 186-type phages, we analysed the complete sequences and important genes of the phages, including whole-genome average nucleotide identity (ANI) and collinearity comparison, evolutionary analysis of four conserved structural genes (V, T, R, and Q genes), and analysis of the regulatory genes (cI, apl, and cII) and integrase gene (int). Phylogenetic analysis revealed that thirteen of the newly isolated phages belong to the genus Eganvirus and one belongs to the genus Felsduovirus in the family Peduoviridae, and these Eganvirus phages can be roughly clustered into three subgroups. The topological relationships exhibited by the whole-genome and structural genes seemed similar and stable, while the regulatory genes presented different topological relationships with the structural genes, and these results indicated that there was some homologous recombination in the regulatory genes. These newly isolated 186-type phages were mostly isolated from dogs, suggesting that the resistance of Canidae to Y. pestis infection may be related to the wide distribution of phages with lytic capability. Full article
(This article belongs to the Special Issue Bacteriophage Diversity)
24 pages, 3164 KiB  
Review
DNA-Based Molecular Machines: Controlling Mechanisms and Biosensing Applications
by Chunran Ma, Shiquan Li, Yuqi Zeng and Yifan Lyu
Biosensors 2024, 14(5), 236; https://doi.org/10.3390/bios14050236 (registering DOI) - 08 May 2024
Abstract
The rise of DNA nanotechnology has driven the development of DNA-based molecular machines, which are capable of performing specific operations and tasks at the nanoscale. Benefitting from the programmability of DNA molecules and the predictability of DNA hybridization and strand displacement, DNA-based molecular [...] Read more.
The rise of DNA nanotechnology has driven the development of DNA-based molecular machines, which are capable of performing specific operations and tasks at the nanoscale. Benefitting from the programmability of DNA molecules and the predictability of DNA hybridization and strand displacement, DNA-based molecular machines can be designed with various structures and dynamic behaviors and have been implemented for wide applications in the field of biosensing due to their unique advantages. This review summarizes the reported controlling mechanisms of DNA-based molecular machines and introduces biosensing applications of DNA-based molecular machines in amplified detection, multiplex detection, real-time monitoring, spatial recognition detection, and single-molecule detection of biomarkers. The challenges and future directions of DNA-based molecular machines in biosensing are also discussed. Full article
(This article belongs to the Special Issue DNA Molecular Engineering-Based Biosensors)
22 pages, 10464 KiB  
Article
Response of Shallow-Water Temperature and Significant Wave Height to Sequential Tropical Cyclones in the Northeast Beibu Gulf
by Xiaotong Chen, Lingling Xie, Mingming Li, Ying Xu and Yulin Wang
J. Mar. Sci. Eng. 2024, 12(5), 790; https://doi.org/10.3390/jmse12050790 (registering DOI) - 08 May 2024
Abstract
Using shallow-water buoy observations, reanalysis data, and numerical models, this study analyzes the variations in sea temperature and significant wave height (SWH) caused by two sequential tropical cyclones (TCs) ‘Lionrock’ and ‘Kompasu’ in October 2021 in the northeast Beibu Gulf, South China Sea. [...] Read more.
Using shallow-water buoy observations, reanalysis data, and numerical models, this study analyzes the variations in sea temperature and significant wave height (SWH) caused by two sequential tropical cyclones (TCs) ‘Lionrock’ and ‘Kompasu’ in October 2021 in the northeast Beibu Gulf, South China Sea. The results show that the sea surface temperature (SST) cooling of the nearshore waters was larger than the offshore water in the basin of the gulf, with the cooling amplitude and rate decreasing and the cooling time lagging behind wind increasing from coast to offshore. The near-surface temperature at the buoy station had a maximum decrease of 2.8 °C after ‘Lionrock’, and the decrease increased slightly to 3 °C after the stronger wind of ‘Kompasu’. The total decrease of 4.6 °C indicates that the sequential TCs had a superimposed effect on the cooling of the Beibu Gulf. The heat budget analysis revealed that the sea surface heat loss and the Ekman pumping rate in the nearshore waters during ‘Kompasu’ (−535 W/m2 and 5.8 × 10−4 m/s, respectively) were significantly higher than that (−418 W/m2 and 4 × 10−4 m/s) during ‘Lionrock’. On the other hand, the SST cooling (−1.2 °C) during the second TC is smaller than (−1.6 °C) the first weaker TC in the gulf basin, probably due to the deepening of the mixed layer. During the observation period, the waves in the Beibu Gulf were predominantly wind-driven. The maximum SWHs reached 1.58 m and 2.3 m at the bouy station near shore during the two TCs, and the SWH variation was highly correlated to the wind variation with a correlation of 0.95. The SWH increases from the nearshore to offshore waters during the TCs. The SAWN and ARCIRC coupled model results suggest that wave variations in the Beibu Gulf are primarily influenced by water depth, bottom friction, and whitecapping. Two days after the TCs, sea surface cooling and high waves appeared again due to a cold air event. Full article
(This article belongs to the Special Issue Ocean Observations)
52 pages, 1118 KiB  
Review
Medical Device-Associated Biofilm Infections and Multidrug-Resistant Pathogens
by Nesrine Bouhrour, Peter H. Nibbering and Farida Bendali
Pathogens 2024, 13(5), 393; https://doi.org/10.3390/pathogens13050393 (registering DOI) - 08 May 2024
Abstract
Medical devices such as venous catheters (VCs) and urinary catheters (UCs) are widely used in the hospital setting. However, the implantation of these devices is often accompanied by complications. About 60 to 70% of nosocomial infections (NIs) are linked to biofilms. The main [...] Read more.
Medical devices such as venous catheters (VCs) and urinary catheters (UCs) are widely used in the hospital setting. However, the implantation of these devices is often accompanied by complications. About 60 to 70% of nosocomial infections (NIs) are linked to biofilms. The main complication is the ability of microorganisms to adhere to surfaces and form biofilms which protect them and help them to persist in the host. Indeed, by crossing the skin barrier, the insertion of VC inevitably allows skin flora or accidental environmental contaminants to access the underlying tissues and cause fatal complications like bloodstream infections (BSIs). In fact, 80,000 central venous catheters—BSIs (CVC-BSIs)—mainly occur in intensive care units (ICUs) with a death rate of 12 to 25%. Similarly, catheter-associated urinary tract infections (CA-UTIs) are the most commonlyhospital-acquired infections (HAIs) worldwide. These infections represent up to 40% of NIs.In this review, we present a summary of biofilm formation steps. We provide an overview of two main and important infections in clinical settings linked to medical devices, namely the catheter-asociated bloodstream infections (CA-BSIs) and catheter-associated urinary tract infections (CA-UTIs), and highlight also the most multidrug resistant bacteria implicated in these infections. Furthermore, we draw attention toseveral useful prevention strategies, and advanced antimicrobial and antifouling approaches developed to reduce bacterial colonization on catheter surfaces and the incidence of the catheter-related infections. Full article
(This article belongs to the Special Issue Hospital-Acquired Infections and Multidrug-Resistant (MDR) Pathogens)
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18 pages, 766 KiB  
Review
The Vital Role of Melatonin and Its Metabolites in the Neuroprotection and Retardation of Brain Aging
by Georgeta Bocheva, Dimitar Bakalov, Petar Iliev and Radka Tafradjiiska-Hadjiolova
Int. J. Mol. Sci. 2024, 25(10), 5122; https://doi.org/10.3390/ijms25105122 (registering DOI) - 08 May 2024
Abstract
While primarily produced in the pineal gland, melatonin’s influence goes beyond its well-known role in regulating sleep, nighttime metabolism, and circadian rhythms, in the field of chronobiology. A plethora of new data demonstrates melatonin to be a very powerful molecule, being a potent [...] Read more.
While primarily produced in the pineal gland, melatonin’s influence goes beyond its well-known role in regulating sleep, nighttime metabolism, and circadian rhythms, in the field of chronobiology. A plethora of new data demonstrates melatonin to be a very powerful molecule, being a potent ROS/RNS scavenger with anti-inflammatory, immunoregulatory, and oncostatic properties. Melatonin and its metabolites exert multiple beneficial effects in cutaneous and systemic aging. This review is focused on the neuroprotective role of melatonin during aging. Melatonin has an anti-aging capacity, retarding the rate of healthy brain aging and the development of age-related neurodegenerative diseases, such as Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, multiple sclerosis, amyotrophic lateral sclerosis, etc. Melatonin, as well as its metabolites, N1-acetyl-N2-formyl-5-methoxykynuramine (AFMK) and N1-acetyl-5-methoxykynuramine (AMK), can reduce oxidative brain damage by shielding mitochondria from dysfunction during the aging process. Melatonin could also be implicated in the treatment of neurodegenerative conditions, by modifying their characteristic low-grade neuroinflammation. It can either prevent the initiation of inflammatory responses or attenuate the ongoing inflammation. Drawing on the current knowledge, this review discusses the potential benefits of melatonin supplementation in preventing and managing cognitive impairment and neurodegenerative diseases. Full article
(This article belongs to the Special Issue Melatonin and Brain Heath)
26 pages, 4507 KiB  
Systematic Review
Phytoparasitic Nematodes of Musa spp. with Emphasis on Sources of Genetic Resistance: A Systematic Review
by Amanda Bahiano Passos Sousa, Anelita de Jesus Rocha, Wanderley Diaciso dos Santos Oliveira, Leandro de Souza Rocha and Edson Perito Amorim
Plants 2024, 13(10), 1299; https://doi.org/10.3390/plants13101299 (registering DOI) - 08 May 2024
Abstract
Bananas are a staple food that considerably contributes to both food security and income generation, especially in countries of Africa, Asia, and Central and South America. The banana plant (Musa spp.) is affected by various pathogens, of main concern being the plant-parasitic [...] Read more.
Bananas are a staple food that considerably contributes to both food security and income generation, especially in countries of Africa, Asia, and Central and South America. The banana plant (Musa spp.) is affected by various pathogens, of main concern being the plant-parasitic nematodes associated with the rhizosphere, the most important of which are Radopholus similis (burrowing nematode), Helicotylenchus sp. (spiral nematode), Pratylenchus sp. (root lesion nematode), and Meloidogyne sp. (gall nematode). Infected plants reduce their ability to absorb water and nutrients, which can lead to delayed flowering, fewer bunches, and lower fruit mass. Obtaining nematode-resistant banana cultivars through genetic improvement is an effective and sustainable option compared with chemical control with nematicides. Here, we provide the first systematic review of existing banana sources of resistance to nematodes to aid the management and control of nematodes in banana and plantain crops. Articles selected from different databases were evaluated, and searches were conducted using pre-established inclusion and exclusion criteria. We found 69 studies dealing with genetic improvement for nematode resistance in banana cultivation. Our findings revealed that sources of resistance are currently under investigation to combat the diseases caused by different nematode species in banana plants. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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53 pages, 2978 KiB  
Article
Enhancing Cryptographic Primitives through Dynamic Cost Function Optimization in Heuristic Search
by Oleksandr Kuznetsov, Nikolay Poluyanenko, Emanuele Frontoni, Sergey Kandiy, Mikolaj Karpinski and Ruslan Shevchuk
Electronics 2024, 13(10), 1825; https://doi.org/10.3390/electronics13101825 (registering DOI) - 08 May 2024
Abstract
The efficiency of heuristic search algorithms is a critical factor in the realm of cryptographic primitive construction, particularly in the generation of highly nonlinear bijective permutations, known as substitution boxes (S-boxes). The vast search space of 256! (256 factorial) permutations for 8-bit sequences [...] Read more.
The efficiency of heuristic search algorithms is a critical factor in the realm of cryptographic primitive construction, particularly in the generation of highly nonlinear bijective permutations, known as substitution boxes (S-boxes). The vast search space of 256! (256 factorial) permutations for 8-bit sequences poses a significant challenge in isolating S-boxes with optimal nonlinearity, a crucial property for enhancing the resilience of symmetric ciphers against cryptanalytic attacks. Existing approaches to this problem suffer from high computational costs and limited success rates, necessitating the development of more efficient and effective methods. This study introduces a novel approach that addresses these limitations by dynamically adjusting the cost function parameters within the hill-climbing heuristic search algorithm. By incorporating principles from dynamic programming, our methodology leverages feedback from previous iterations to adaptively refine the search trajectory, leading to a significant reduction in the number of iterations required to converge on optimal solutions. Through extensive comparative analyses with state-of-the-art techniques, we demonstrate that our approach achieves a remarkable 100% success rate in locating 8-bit bijective S-boxes with maximal nonlinearity, while requiring only 50,000 iterations on average—a substantial improvement over existing methods. The proposed dynamic parameter adaptation mechanism not only enhances the computational efficiency of the search process, but also showcases the potential for interdisciplinary collaboration between the fields of heuristic optimization and cryptography. The practical implications of our findings are significant, as the ability to efficiently generate highly nonlinear S-boxes directly contributes to the development of more secure and robust symmetric encryption systems. Furthermore, the dynamic parameter adaptation concept introduced in this study opens up new avenues for future research in the broader context of heuristic optimization and its applications across various domains. Full article
(This article belongs to the Special Issue Security, Privacy, Confidentiality and Trust in Blockchain)
30 pages, 1252 KiB  
Article
Optimizing Last-Mile Delivery: A Multi-Criteria Approach with Automated Smart Lockers, Capillary Distribution and Crowdshipping
by Bartosz Sawik
Logistics 2024, 8(2), 52; https://doi.org/10.3390/logistics8020052 (registering DOI) - 08 May 2024
Abstract
Background: This publication presents a review, multiple criteria optimization models, and a practical example pertaining to the integration of automated smart locker systems, capillary distribution networks, crowdshipping, last-mile delivery and supply chain management. This publication addresses challenges in logistics and transportation, aiming [...] Read more.
Background: This publication presents a review, multiple criteria optimization models, and a practical example pertaining to the integration of automated smart locker systems, capillary distribution networks, crowdshipping, last-mile delivery and supply chain management. This publication addresses challenges in logistics and transportation, aiming to enhance efficiency, reduce costs and improve customer satisfaction. This study integrates automated smart locker systems, capillary distribution networks, crowdshipping, last-mile delivery and supply chain management. Methods: A review of the existing literature synthesizes key concepts, such as facility location problems, vehicle routing problems and the mathematical programming approach, to optimize supply chain operations. Conceptual optimization models are formulated to solve the complex decision-making process involved in last-mile delivery, considering multiple objectives, including cost minimization, delivery time optimization, service level minimization, capacity optimization, vehicle minimization and resource utilization. Results: The multiple criteria approaches combine the vehicle routing problem and facility location problem, demonstrating the practical applicability of the proposed methodology in a real-world case study within a logistics company. Conclusions: The execution of multi-criteria models optimizes automated smart locker deployment, capillary distribution design, crowdshipping and last-mile delivery strategies, showcasing its effectiveness in the logistics sector. Full article
17 pages, 680 KiB  
Article
Exploring the Impact of Pandemic Measures on Airport Performance
by James J. H. Liou, Chih Wei Chien, Pedro Jose Gudiel Pineda, Chun-Sheng Joseph Li and Chao-Che Hsu
Aerospace 2024, 11(5), 373; https://doi.org/10.3390/aerospace11050373 (registering DOI) - 08 May 2024
Abstract
The impact of COVID-19 measures on airport performance is obvious, and there have been numerous studies on this topic. However, most of these studies discuss prevention measures, the effects on airport operations, forecasts of economic impacts, changes in service quality, etc. There is [...] Read more.
The impact of COVID-19 measures on airport performance is obvious, and there have been numerous studies on this topic. However, most of these studies discuss prevention measures, the effects on airport operations, forecasts of economic impacts, changes in service quality, etc. There is a lack of research on the effects of various prevention measures on airport operations and the interrelationships between these measures. This study focuses on addressing this gap. In this study, an integrated approach is devised that combines the decision-making trial and evaluation laboratory (DEMATEL) method and interpretive structural modeling (ISM). This integrated method is useful for exploring the relationship between pandemic measures and airport performance as well as the complex relationship between them, and the combination of methods improves upon the shortcomings of the original models. This study reveals that mandating vaccination certificates for entry into a country is the most significant measure affecting airport performance. Additionally, aircraft movement at the airport has the greatest overall impact and can be considered the most crucial factor influencing airport performance from an operational standpoint. The findings show that both factors directly influence financial performance, as reflected in the net income. Some management implications are provided to mitigate the consequences of the measures taken to counter the pandemic crisis. This integrated approach should also assist authorities and policy-makers in planning cautious action for future crises. Full article
30 pages, 2618 KiB  
Article
Dynamics Event-Triggered-Based Time-Varying Bearing Formation Control for UAVs
by Can Ding, Zhe Zhang and Jing Zhang
Drones 2024, 8(5), 185; https://doi.org/10.3390/drones8050185 (registering DOI) - 08 May 2024
Abstract
This article addresses the leader-follower formation maneuver control problem of multiple unmanned aerial vehicles (UAVs), taking into account the time-varying velocity and time-varying relative bearing. An event-triggered bearing-based distributed velocity observer was designed, using only the desired position and velocity of the leaders. [...] Read more.
This article addresses the leader-follower formation maneuver control problem of multiple unmanned aerial vehicles (UAVs), taking into account the time-varying velocity and time-varying relative bearing. An event-triggered bearing-based distributed velocity observer was designed, using only the desired position and velocity of the leaders. Furthermore, a dynamic event-triggered mechanism was introduced to reduce continuous communication between UAVs, thus effectively saving communication bandwidth and resources. Building on this, a bearing-only formation maneuver control strategy was proposed, integrating the event-triggered velocity observer with the backstepping control approach. To conclude, numerical simulations have been conducted to confirm the effectiveness of the proposed scheme in accomplishing formation maneuver control objectives, including translation, scaling, and rotation control. Furthermore, the advantages of the dynamic event-triggering strategy have been demonstrated through comparative simulations with traditional event-triggering strategies. Additionally, the effectiveness of the proposed observer and controller has been demonstrated by a comprehensive hardware-in-the-loop (HITL) simulation example. Full article
22 pages, 1558 KiB  
Review
Exposure to Environmental Toxins: Potential Implications for Stroke Risk via the Gut– and Lung–Brain Axis
by Alexandria Ruggles and Corinne Benakis
Cells 2024, 13(10), 803; https://doi.org/10.3390/cells13100803 (registering DOI) - 08 May 2024
Abstract
Recent evidence suggests that exposure to environmental toxins, both short-term and long-term, can increase the risk of developing neurological disorders, including neurodegenerative diseases (i.e., Alzheimer’s disease and other dementias) and acute brain injury (i.e., stroke). For stroke, the latest systematic analysis revealed that [...] Read more.
Recent evidence suggests that exposure to environmental toxins, both short-term and long-term, can increase the risk of developing neurological disorders, including neurodegenerative diseases (i.e., Alzheimer’s disease and other dementias) and acute brain injury (i.e., stroke). For stroke, the latest systematic analysis revealed that exposure to ambient particulate matter is the second most frequent stroke risk after high blood pressure. However, preclinical and clinical stroke investigations on the deleterious consequences of environmental pollutants are scarce. This review examines recent evidence of how environmental toxins, absorbed along the digestive tract or inhaled through the lungs, affect the host cellular response. We particularly address the consequences of environmental toxins on the immune response and the microbiome at the gut and lung barrier sites. Additionally, this review highlights findings showing the potential contribution of environmental toxins to an increased risk of stroke. A better understanding of the biological mechanisms underlying exposure to environmental toxins has the potential to mitigate stroke risk and other neurological disorders. Full article
(This article belongs to the Special Issue Stroke Immunology: Mechanisms and Therapeutic Prospects)
35 pages, 1271 KiB  
Article
The Coupling Effects of PGPR Inoculation and Foliar Spraying of Strigolactone in Mitigating the Negative Effect of Salt Stress in Wheat Plants: Insights from Phytochemical, Growth, and Yield Attributes
by Shadi Sadat Mehrabi, Manijeh Sabokdast, Mohammad Reza Bihamta and Beáta Dedičová
Agriculture 2024, 14(5), 732; https://doi.org/10.3390/agriculture14050732 (registering DOI) - 08 May 2024
Abstract
Salt stress has detrimental effects on wheat plants at several physiological, biochemical, and molecular levels. This stress leads to suppressed growth, reduced grain yield, and poor quality of harvested grains. However, two approaches have shown promise for improving wheat salt tolerance: using a [...] Read more.
Salt stress has detrimental effects on wheat plants at several physiological, biochemical, and molecular levels. This stress leads to suppressed growth, reduced grain yield, and poor quality of harvested grains. However, two approaches have shown promise for improving wheat salt tolerance: using a synthetic strigolactone analog called GR24 and applying plant growth-promoting rhizobacteria (PGPR). GR24 plays a vital role in regulating plant growth and development and in defense against various stresses. Conversely, PGPR are beneficial bacteria that colonize the rhizosphere of plants and promote their growth through multiple mechanisms. In our study, we investigated the effects of salinity on the growth and yield traits of two different wheat cultivars and explored the combined role of PGPR and GR24 in mitigating the impact of salt stress. We created three different salinity levels using NaCl in pots (original, 5 dS m−1, and 10 dS m−1) and inoculated wheat seeds with a salt-tolerant Bacillus velezensis UTB96 strain. In addition, we applied 10 μM GR24 via foliar application during the pollination stage. Our observations showed that salt stress negatively affected wheat’s growth, yield, and phytochemical properties compared to the control. However, both single and combined applications of PGPR and GR24 mitigated the adverse effects of salinity. The combined treatment had a more substantial impact than either alone in inducing and improving biochemical and ionic characteristics. These included decreasing Na+ content in both leaves and roots, and EL, H2O2, and MDA content in leaves while increasing K+ content in both leaves and roots, growth and yield-related traits, RWC, chlorophyll pigments, total protein, soluble sugar, starch, proline, GB, and antioxidant enzyme activity (APX, POX, and CAT) of leaves. In conclusion, integrating PGPR and GR24 can efficiently induce salt tolerance and improve plant growth under stressed conditions. This combined approach has the potential for broad applicability in supporting plant growth in the presence of salt stress. Full article
(This article belongs to the Section Crop Production)
24 pages, 3066 KiB  
Article
Novel Combretastatin A-4 Analogs—Design, Synthesis, and Antiproliferative and Anti-Tubulin Activity
by Marta Jędrzejczyk, Benedetta Morabito, Barbara Żyżyńska-Granica, Marta Struga, Jan Janczak, Maral Aminpour, Jack A. Tuszynski and Adam Huczyński
Molecules 2024, 29(10), 2200; https://doi.org/10.3390/molecules29102200 (registering DOI) - 08 May 2024
Abstract
Combretastatins isolated from the Combretum caffrum tree belong to a group of closely related stilbenes. They are colchicine binding site inhibitors which disrupt the polymerization process of microtubules in tubulins, causing mitotic arrest. In vitro and in vivo studies have proven that some [...] Read more.
Combretastatins isolated from the Combretum caffrum tree belong to a group of closely related stilbenes. They are colchicine binding site inhibitors which disrupt the polymerization process of microtubules in tubulins, causing mitotic arrest. In vitro and in vivo studies have proven that some combretastatins exhibit antitumor properties, and among them, combretastatin A-4 is the most active mitotic inhibitor. In this study, a series of novel combretastatin A-4 analogs containing carboxylic acid, ester, and amide moieties were synthesized and their cytotoxic activity against six tumor cell lines was determined using sulforhodamine B assay. For the most cytotoxic compounds (8 and 20), further studies were performed. These compounds were shown to induce G0/G1 cell cycle arrest in MDA and A549 cells, in a concentration-dependent manner. Moreover, in vitro tubulin polymerization assays showed that both compounds are tubulin polymerization enhancers. Additionally, computational analysis of the binding modes and binding energies of the compounds with respect to the key human tubulin isotypes was performed. We have obtained a satisfactory correlation of the binding energies with the IC50 values when weighted averages of the binding energies accounting for the abundance of tubulin isotypes in specific cancer cell lines were computed. Full article
(This article belongs to the Special Issue Small-Molecule Inhibitors of Tubulin Polymerization: Recent Advances)
17 pages, 5571 KiB  
Article
Bearing Characteristics with Effect of Bond–Slip Behavior in Massive Ring-Type Reinforced Concrete Structures
by Wen-Tao Xu, Zhu Ma, He-Gao Wu and Chang-Zheng Shi
Buildings 2024, 14(5), 1332; https://doi.org/10.3390/buildings14051332 (registering DOI) - 08 May 2024
Abstract
The bond–slip behavior of the steel–concrete interface is critical in reinforced concrete (RC) structures since the bond action is the mechanism that ensures the two materials work in co-operation. However, there is little research considering the bond–slip behavior in massive ring-type reinforced concrete [...] Read more.
The bond–slip behavior of the steel–concrete interface is critical in reinforced concrete (RC) structures since the bond action is the mechanism that ensures the two materials work in co-operation. However, there is little research considering the bond–slip behavior in massive ring-type reinforced concrete (MRRC) structure bearing analyses due to the complexity of modeling the interfacial behavior. Hence, the influence of the bond–slip behavior on the bearing characteristics of MRRC structures remains unclear. Steel-lined reinforced concrete penstock is such an MRRC structure, composed of steel liner and reinforced concrete and commonly used in diversion pipelines. This paper aims to explore the bearing characteristics considering the bond–slip behavior in the composite penstock by using a promising numerical method, the cohesive zone model. Three interface models were proposed to represent the different interaction conditions at the steel–concrete interface. Moreover, a sensitivity analysis was performed to study the impact of the bond strength on the bond performance and structural behavior. The simulation results showed that the prediction results (steel stress and crack process) considering the bond–slip behavior were in good agreement with the experimental results. The steel stresses near the cracks were smaller and more uniform after considering the bond–slip behavior, since the stresses were no longer concentrated on the crack but distributed in an area near the crack. However, the steel stress differences in these models were within 10%, which means that the bond performance had a limited effect on the structural safety design. The crack widths were greatly influenced by the bond conditions, and the maximum crack width (0.461 mm) in poor conditions was beyond the limiting value (0.3 mm). Consequently, bond–slip behavior must be paid more attention in durability design. Full article
(This article belongs to the Section Building Structures)
14 pages, 2153 KiB  
Article
Host miR-146a-3p Facilitates Replication of Infectious Hematopoietic Necrosis Virus by Targeting WNT3a and CCND1
by Jingwen Huang, Shihao Zheng, Qiuji Li, Hongying Zhao, Xinyue Zhou, Yutong Yang, Wenlong Zhang and Yongsheng Cao
Vet. Sci. 2024, 11(5), 204; https://doi.org/10.3390/vetsci11050204 (registering DOI) - 08 May 2024
Abstract
Infectious hematopoietic necrosis virus (IHNV) is a serious pathogen that causes great economic loss to the salmon and trout industry. Previous studies showed that IHNV alters the expression patterns of splenic microRNAs (miRNAs) in rainbow trout. Among the differentially expressed miRNAs, miRNA146a-3p was [...] Read more.
Infectious hematopoietic necrosis virus (IHNV) is a serious pathogen that causes great economic loss to the salmon and trout industry. Previous studies showed that IHNV alters the expression patterns of splenic microRNAs (miRNAs) in rainbow trout. Among the differentially expressed miRNAs, miRNA146a-3p was upregulated by IHNV. However, it is unclear how IHNV utilizes miRNA146a-3p to escape the immune response or promote viral replication. The present study suggested that one multiplicity of infection (MOI) of IHNV induced the most significant miR-146a-3p expression at 1 day post infection (dpi). The upregulation of miR-146a-3p by IHNV was due to viral N, P, M, and G proteins and relied on the interferon (IFN) signaling pathway. Further investigation revealed that Wingless-type MMTV integration site family 3a (WNT3a) and G1/S-specific cyclin-D1-like (CCND1) are the target genes of miRNA-146a-3p. The regulation of IHNV infection by miRNA-146a-3p is dependent on WNT3a and CCND1. MiRNA-146a-3p was required for the downregulation of WNT3a and CCND1 by IHNV. Moreover, we also found that WNT3a and CCND1 are novel proteins that induce the type-I IFN response in RTG-2 cells, and both of them could inhibit the replication of IHNV. Therefore, IHNV-induced upregulation of miRNA-146a-3p promotes early viral replication by suppressing the type-I IFN response by targeting WNT3a and CCND1. This work not only reveals the molecular mechanism of miRNA-146a-3p during IHNV infection but also provides new antiviral targets for IHNV. Full article
(This article belongs to the Section Veterinary Microbiology, Parasitology and Immunology)
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19 pages, 3039 KiB  
Article
Spatial Characteristics of Aeolian Sand Transport Affected by Surface Vegetation along the Oshang Railway
by Ning Huang, Yanhong Song, Xuanmin Li, Bin Han, Lihang Xu and Jie Zhang
Sustainability 2024, 16(10), 3940; https://doi.org/10.3390/su16103940 (registering DOI) - 08 May 2024
Abstract
Blown sand transport plays a pivotal role in determining the optimal placement of sand protection facilities along railways in sandy areas. Surface vegetation cover significantly influences blowing sand activities along the Oshang Railway (from Otog Front Banner to Shanghai-Temple Town). In this study, [...] Read more.
Blown sand transport plays a pivotal role in determining the optimal placement of sand protection facilities along railways in sandy areas. Surface vegetation cover significantly influences blowing sand activities along the Oshang Railway (from Otog Front Banner to Shanghai-Temple Town). In this study, the spatial characteristics of aeolian sand transport along the railway were derived from field observations conducted at five different locations, each with varying fractional vegetation cover (FVC). The results indicate that sand-transport intensity does not fully correlate with the wind energy environment, primarily due to differences in surface vegetation cover among the observation sites. We utilize the dimensionless ratio Q·g·f/(0.136 × DP·ρa) to represent the sand transport rate (Q), the sand-moving wind frequency (f) and drift potential (DP), exhibiting a negative exponential trend with FVC. Sand transport is effectively restrained when FVC is greater than or equal to 20%. Conversely, when FVC is less than 20%, sand transport intensity exponentially increases with decreasing fractional vegetation cover. After careful analysis, we propose a simple empirical expression that incorporates the influence of both the wind field and fractional vegetation cover to assess sand transport on a flat surface. The study offers valuable insights for designing wind-blown sand protection measures along railways and evaluating wind-blown sand movement on a flat surface affected by vegetation. Full article
16 pages, 760 KiB  
Article
Comprehensive Study of Equilibrium Structure of Trans-Azobenzene: Gas Electron Diffraction and Quantum Chemical Calculations
by Alexander E. Pogonin, Ivan Yu. Kurochkin, Alexey V. Eroshin, Maksim N. Zavalishin and Yuriy A. Zhabanov
Physchem 2024, 4(2), 131-146; https://doi.org/10.3390/physchem4020010 (registering DOI) - 08 May 2024
Abstract
The geometrical re parameters of trans-azobenzene (E-AB) free molecule were refined by gas electron diffraction (GED) method using available experimental data obtained previously by S. Konaka and coworkers. Structural analysis was carried out by various techniques. First of all, these included the [...] Read more.
The geometrical re parameters of trans-azobenzene (E-AB) free molecule were refined by gas electron diffraction (GED) method using available experimental data obtained previously by S. Konaka and coworkers. Structural analysis was carried out by various techniques. First of all, these included the widely used molecular orbital constrained gas electron diffraction method and regularization method. The results of the refinements using different models were also compared—a semirigid model, three variants of one-dimensional dynamic models, and a two-dimensional pseudoconformer model. Several descriptions have been used due to the fact that E-AB has a shallow potential energy surface along the rotation coordinates of phenyl groups. Despite this, it turned out that the semirigid model is suitable for use for E-AB and allows good agreement with experimental data to be achieved. According to the results of GED structural analysis, coupled with the results of DLPNO-CCSD(T0) calculations, E-AB has a planar structure. Based only on GED data, it is impossible to unambiguously determine the rotational angle of the phenyl group due to the facts that (i) with rotation over a wide range of angles, the bonded distances in the molecule change insignificantly and (ii) potential function in a structural analysis within a dynamic model is not determined with the necessary accuracy. This work also examines the sensitivity of the GED method to structural changes caused by trans-cis isomerization. The paper also analyzes the applicability of different variants of density functional theory (DFT) calculations in GED structural analysis using E-AB as an example. There are not enough similar methodological works in the literature. This experimental and methodological information is especially important and relevant for planning and implementing GED experiments and corresponding processing of the results for azobenzene derivatives, in which the conformer and isomeric diversity are even more complicated due to the presence of different substituents. Full article
(This article belongs to the Section Theoretical and Computational Chemistry)
17 pages, 800 KiB  
Article
Optimization of the Extraction Process and Biological Activities of Triterpenoids of Schisandra sphenanthera from Different Medicinal Parts and Growth Stages
by Qiaozhu Zhao, Jianhua Li, Qianqian Shang, Jiafang Jiang, Han Pu, Xilin Fang, Xiaolu Qin, Jia Zhou, Nongxue Wang, Xiaorui Wang and Wei Gu
Molecules 2024, 29(10), 2199; https://doi.org/10.3390/molecules29102199 (registering DOI) - 08 May 2024
Abstract
Schisandra sphenanthera Rehd. et Wils., as a traditional Chinese medicine, has important medicinal value. In the market, the availability of the fruit of S. sphenanthera mainly relies on wild picking, but many canes and leaves are discarded during wild collection, resulting in a [...] Read more.
Schisandra sphenanthera Rehd. et Wils., as a traditional Chinese medicine, has important medicinal value. In the market, the availability of the fruit of S. sphenanthera mainly relies on wild picking, but many canes and leaves are discarded during wild collection, resulting in a waste of resources. The canes and leaves of S. sphenanthera contain various bioactive ingredients and can be used as spice, tea, and medicine and so present great utilization opportunities. Therefore, it is helpful to explore the effective components and biological activities of the canes and leaves to utilize S. sphenanthera fully. In this study, the response surface method with ultrasound was used to extract the total triterpenoids from the canes and leaves of S. sphenanthera at different stages. The content of total triterpenoids in the leaves at different stages was higher than that in the canes. The total triterpenoids in the canes and leaves had strong antioxidant and antibacterial abilities. At the same time, the antibacterial activity of the total triterpenoids against Bacillus subtilis and Pseudomonas aeruginosa was stronger than that against Staphylococcus aureus and Escherichia coli. This study provides the foundation for the development and utilization of the canes and leaves that would relieve the shortage of fruit resources of S. sphenanthera. Full article
13 pages, 2004 KiB  
Article
Forward Starting Option Pricing under Double Fractional Stochastic Volatilities and Jumps
by Sumei Zhang, Haiyang Xiao and Hongquan Yong
Fractal Fract. 2024, 8(5), 283; https://doi.org/10.3390/fractalfract8050283 (registering DOI) - 08 May 2024
Abstract
This paper aims to provide an effective method for pricing forward starting options under the double fractional stochastic volatilities mixed-exponential jump-diffusion model. The value of a forward starting option is expressed in terms of the expectation of the forward characteristic function of log [...] Read more.
This paper aims to provide an effective method for pricing forward starting options under the double fractional stochastic volatilities mixed-exponential jump-diffusion model. The value of a forward starting option is expressed in terms of the expectation of the forward characteristic function of log return. To obtain the forward characteristic function, we approximate the pricing model with a semimartingale by introducing two small perturbed parameters. Then, we rewrite the forward characteristic function as a conditional expectation of the proportion characteristic function which is expressed in terms of the solution to a classic PDE. With the affine structure of the approximate model, we obtain the solution to the PDE. Based on the derived forward characteristic function and the Fourier transform technique, we develop a pricing algorithm for forward starting options. For comparison, we also develop a simulation scheme for evaluating forward starting options. The numerical results demonstrate that the proposed pricing algorithm is effective. Exhaustive comparative experiments on eight models show that the effects of fractional Brownian motion, mixed-exponential jump, and the second volatility component on forward starting option prices are significant, and especially, the second fractional volatility is necessary to price accurately forward starting options under the framework of fractional Brownian motion. Full article
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19 pages, 833 KiB  
Article
A Comparative Study of the Tourism Carrying Capacity of the State of Baja California between 2019 and 2022
by Blanca Bernal, Nancy Montero and Sergio Vázquez
Sustainability 2024, 16(10), 3938; https://doi.org/10.3390/su16103938 (registering DOI) - 08 May 2024
Abstract
The purpose of this work is to conduct a comparative study of variations in the indicators of the tourism carrying capacity in the state of Baja California. It is crucial to consider that the state had to confront the COVID-19 pandemic, during which [...] Read more.
The purpose of this work is to conduct a comparative study of variations in the indicators of the tourism carrying capacity in the state of Baja California. It is crucial to consider that the state had to confront the COVID-19 pandemic, during which tourism was not deemed an essential activity. This circumstance generated numerous social, psychological, and economic effects, primarily. In this regard, the aim is to identify the consequences of organizing events that promote tourism, particularly concerning the opinions of business professionals in the region. This is a qualitative and longitudinal study; the initial phase took place in May 2019, while the second survey occurred in the summer of 2022. The statistical sample is non-probabilistic and based on convenience, comprising 320 tourism businesses. The findings indicate that the tourist destinations remained appealing, experiencing inflows just above the average and approaching their capacity limits. Significantly, there are areas for improvement in terms of their tourist load capacities across each of the dimensions studied, despite the global health crisis. Full article
(This article belongs to the Special Issue Sustainable Tourism Planning and Management)
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16 pages, 6420 KiB  
Article
Near Real-Time Monitoring of Large Gradient Nonlinear Subsidence in Mining Areas: A Hybrid SBAS-InSAR Method Integrating Robust Sequential Adjustment and Deep Learning
by Yuanjian Wang, Ximin Cui, Yuhang Che, Yuling Zhao, Peixian Li, Xinliang Kang and Yue Jiang
Remote Sens. 2024, 16(10), 1664; https://doi.org/10.3390/rs16101664 (registering DOI) - 08 May 2024
Abstract
With the increasing availability of satellite monitoring data, the demand for storage and computational resources for updating the results of monitoring the surface subsidence in a mining area continues to rise. Sequential adjustment (SA) models are considered effective for rapidly updating time series [...] Read more.
With the increasing availability of satellite monitoring data, the demand for storage and computational resources for updating the results of monitoring the surface subsidence in a mining area continues to rise. Sequential adjustment (SA) models are considered effective for rapidly updating time series interferometry synthetic aperture radar (TS-InSAR) measurements. However, the accuracy of surface subsidence values estimated through traditional sequential adjustment is highly sensitive to abnormal observations or prior information on anomalies. Moreover, the surface subsidence associated with mining exhibits nonlinear and large gradient characteristics, making general InSAR methods challenging for obtaining reliable monitoring results. In this study, we employ the phase unwrapping network (PUNet) to obtain unwrapped values of differential interferograms. To mitigate the impact of abnormal errors in the near real-time small baseline subset InSAR (SBAS-InSAR) sequential updating process in mining areas, a robust sequential adjustment method based on M-estimation is proposed to estimate the temporal deformation parameters by using the equivalent weight model. Using a coal backfilling mining face in Shanxi, China, as the study area and the Sentinel-1 SAR dataset, we comprehensively evaluate the performance of unwrapping methods and subsidence time series estimation techniques and evaluate the effect of filling mining on surface subsidence control. The results are validated using leveling measurements within the study area. The relative error of the proposed method is less than 5%, which can meet the requirements of monitoring the surface subsidence in mining areas. The method proposed in this study not only enhances computational efficiency but also addresses the issue of underestimation encountered by InSAR methods in mining area applications. Furthermore, it also mitigates unwrapping phase anomalies on the monitoring results. Full article
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21 pages, 796 KiB  
Review
Current Status and Future Perspectives of Antibody–Drug Conjugates in Hormone Receptor-Positive Breast Cancer
by Maria Grammoustianou, Foteinos-Ioannis Dimitrakopoulos and Angelos Koutras
Cancers 2024, 16(10), 1801; https://doi.org/10.3390/cancers16101801 (registering DOI) - 08 May 2024
Abstract
Breast cancer is the most common cancer type in women. The vast majority of breast cancer patients have hormone receptor-positive (HR+) tumors. In advanced HR+ breast cancer, the combination of endocrine therapy with cyclin-dependent kinase 4/6 (CDK4/6) inhibitors is considered the standard of [...] Read more.
Breast cancer is the most common cancer type in women. The vast majority of breast cancer patients have hormone receptor-positive (HR+) tumors. In advanced HR+ breast cancer, the combination of endocrine therapy with cyclin-dependent kinase 4/6 (CDK4/6) inhibitors is considered the standard of care in the front-line setting. Nevertheless, resistance to hormonal therapy and CDK4/6 inhibitors eventually occurs, leading to progression of the disease. Antibody–drug conjugates (ADCs) comprise a promising therapeutic choice with significant efficacy in patients with HR+ breast cancer, which is resistant to endocrine treatment. ADCs typically consist of a cytotoxic payload attached by a linker to a monoclonal antibody that targets a specific tumor-associated antigen, offering the advantage of a more selective delivery of chemotherapy to cancer cells. In this review, we focus on the ADC mechanisms of action, their toxicity profile and therapeutic uses as well as on related biomarkers and future perspectives in advanced HR+ breast cancer. Full article
(This article belongs to the Special Issue 2nd Edition: Estrogen Receptor-Positive (ER+) Breast Cancers)
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15 pages, 731 KiB  
Article
Synergistic Integration of EVs and Renewable DGs in Distribution Micro-Grids
by Mahmoud Ghofrani
Sustainability 2024, 16(10), 3939; https://doi.org/10.3390/su16103939 (registering DOI) - 08 May 2024
Abstract
This paper proposes a multi-objective optimization framework for safe, reliable, and economic integration of electric vehicles (EVs) and renewable distributed generators (DGs) in distribution micro-grids. EV and DG coordination optimization with the use of vehicle-to-grid (V2G) technology along with system reconfiguration optimization is [...] Read more.
This paper proposes a multi-objective optimization framework for safe, reliable, and economic integration of electric vehicles (EVs) and renewable distributed generators (DGs) in distribution micro-grids. EV and DG coordination optimization with the use of vehicle-to-grid (V2G) technology along with system reconfiguration optimization is developed to provide collective revenues and address integrational complications that may occur by additional system loading due to EV charging and EV-DG energy exchanges. A Genetic Algorithm (GA) optimizes the EV charging/discharging in synergies with renewable DGs to maximize benefits that can be captured by their collaborative participation in electricity market and through renewable energy arbitrage. The developed EV charging/discharging optimization is implemented in a real 134-bus distribution network and is evaluated for its potential operational implications, namely, increased system losses. A system reconfiguration is then proposed to reduce the system losses by optimizing the flow of power through switching on/off the connections within the micro-grid and/or with other distribution systems. Simulation results demonstrate the efficiency of the proposed method in not only providing collective revenues, but also in enhancing the system operation by reducing the losses of the distribution grid. The collective benefits proposed by the developed optimization and validated by the simulation results facilitate transitioning to clean and eco-friendly sources of energy for generation and transportation, which in turn leads to more sustainable development of societies and communities. Full article

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