The 2023 MDPI Annual Report has
been released!
 
47 pages, 4097 KiB  
Review
Multi-Interacting Natural and Anthropogenic Stressors on Freshwater Ecosystems: Their Current Status and Future Prospects for 21st Century
by Doru Bănăduc, Angela Curtean-Bănăduc, Sophia Barinova, Verónica L. Lozano, Sergey Afanasyev, Tamara Leite, Paulo Branco, Daniel F. Gomez Isaza, Juergen Geist, Aristoteles Tegos, Horea Olosutean and Kevin Cianfanglione
Water 2024, 16(11), 1483; https://doi.org/10.3390/w16111483 (registering DOI) - 23 May 2024
Abstract
The inheritance of historic human-induced disruption and the fierceness of its impact change aquatic ecosystems. This work reviews some of the main stressors on freshwater ecosystems, focusing on their effects, threats, risks, protection, conservation, and management elements. An overview is provided on the [...] Read more.
The inheritance of historic human-induced disruption and the fierceness of its impact change aquatic ecosystems. This work reviews some of the main stressors on freshwater ecosystems, focusing on their effects, threats, risks, protection, conservation, and management elements. An overview is provided on the water protection linked to freshwater stressors: solar ultraviolet radiation, thermal pollution, nanoparticles, radioactive pollution, salinization, nutrients, sedimentation, drought, extreme floods, fragmentation, pesticides, war and terrorism, algal blooms, invasive aquatic plants, riparian vegetation, and invasive aquatic fish. Altogether, these stressors build an exceptionally composite background of stressors that are continuously changing freshwater ecosystems and diminishing or even destroying their capability to create and maintain ongoing natural healthy products and essential services to humans. Environmental and human civilization sustainability cannot exist without the proper management of freshwater ecosystems all over the planet; this specific management is impossible if the widespread studied stressors are not deeply understood structurally and functionally. Without considering each of these stressors and their synergisms, the Earth’s freshwater is doomed in terms of both quantitative and qualitative aspects. Full article
24 pages, 42313 KiB  
Article
On the Spanwise Periodicity within the Gap between Two Different-Sized Tandem Circular Cylinders at Re = 3900
by Di Zhang, Dongfang Liang, Jun Deng, Yakun Liu and Jialiang Xie
J. Mar. Sci. Eng. 2024, 12(6), 866; https://doi.org/10.3390/jmse12060866 (registering DOI) - 23 May 2024
Abstract
Although the spanwise periodicity within the gap between two tandem circular cylinders has been observed by some researchers, there is a lack of systematic research on the properties of this periodicity. For the spanwise periodicity within the gap, this study aims to ascertain [...] Read more.
Although the spanwise periodicity within the gap between two tandem circular cylinders has been observed by some researchers, there is a lack of systematic research on the properties of this periodicity. For the spanwise periodicity within the gap, this study aims to ascertain its characteristics, its influences on the flow field, and its variation trend with increasing spacing ratio. By numerically simulating the flow around two tandem circular cylinders with a diameter ratio of d/D = 0.6 and seventeen spacing ratios (L/D = 1.00~6.00) at Re = 3900, this study shows four flow regimes: Reattachment Flow (L/D = 1.00~3.15), Bi-stable Flow (L/D = 3.24), Intermittent Lock-in Co-shedding (L/D = 3.30~3.50), and Subharmonic Lock-in Co-shedding (L/D = 4.00~6.00). Further, depending on the spanwise periodicity length of the time-averaged flow structures (i.e., Pz) within the gap, Reattachment Flow is, for the first time, subdivided into three new sub-flow regimes: Small-scale Periodic Reattachment (L/D = 1.00~1.50, Pz/D = (0, 4]), Large-scale Periodic Reattachment (L/D = 2.00~2.25, Pz/D > 4) and Non-periodic Reattachment (L/D = 2.50~3.15, no spanwise periodicity). The formation mechanisms are elaborated by analyzing the combined effect of both the L/D value and the spanwise-averaged time-averaged reattachment angle of the downstream cylinder. Moreover, this study proves that the newly defined Small-scale Periodic Reattachment and Large-scale Periodic Reattachment are responsible for the pronounced asymmetry of the flow along the transverse direction within the gap. In addition, detailed flow properties and statistical parameters are provided for each flow regime, such as velocity, vorticity, force coefficient, separation/reattachment angle, Strouhal number, and Q-criterion. Full article
(This article belongs to the Section Ocean Engineering)
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Review
Diagnostic Challenges in Aortic Stenosis
by André González-García, Pablo Pazos-López, Francisco Eugenio Calvo-Iglesias, Tatiana Mallely Matajira-Chía, Raquel Bilbao-Quesada, Elisa Blanco-González, Carina González-Ríos, María Castiñeira-Busto, Manuel Barreiro-Pérez and Andrés Íñiguez-Romo
J. Cardiovasc. Dev. Dis. 2024, 11(6), 162; https://doi.org/10.3390/jcdd11060162 (registering DOI) - 23 May 2024
Abstract
Aortic stenosis (AS) is the most prevalent degenerative valvular disease in western countries. Transthoracic echocardiography (TTE) is considered, nowadays, to be the main imaging technique for the work-up of AS due to high availability, safety, low cost, and excellent capacity to evaluate aortic [...] Read more.
Aortic stenosis (AS) is the most prevalent degenerative valvular disease in western countries. Transthoracic echocardiography (TTE) is considered, nowadays, to be the main imaging technique for the work-up of AS due to high availability, safety, low cost, and excellent capacity to evaluate aortic valve (AV) morphology and function. Despite the diagnosis of AS being considered straightforward for a very long time, based on high gradients and reduced aortic valve area (AVA), many patients with AS represent a real dilemma for cardiologist. On the one hand, the acoustic window may be inadequate and the TTE limited in some cases. On the other hand, a growing body of evidence shows that patients with low gradients (due to systolic dysfunction, concentric hypertrophy or coexistence of another valve disease such as mitral stenosis or regurgitation) may develop severe AS (low-flow low-gradient severe AS) with a similar or even worse prognosis. The use of complementary imaging techniques such as transesophageal echocardiography (TEE), multidetector computed tomography (MDTC), or cardiac magnetic resonance (CMR) plays a key role in such scenarios. The aim of this review is to summarize the diagnostic challenges associated with patients with AS and the advantages of a comprehensive multimodality cardiac imaging (MCI) approach to reach a precise grading of the disease, a crucial factor to warrant an adequate management of patients. Full article
16 pages, 2551 KiB  
Article
From Extraction to Stabilization: Employing a 22 Experimental Design in Developing Nutraceutical-Grade Bixin from Bixa orellana L.
by Christine L. Luna-Finkler, Aralí da C. Gomes, Francisco C. A. de Aguiar Júnior, Ester Ribeiro, Raquel de M. Barbosa, Patricia Severino, Antonello Santini and Eliana B. Souto
Foods 2024, 13(11), 1622; https://doi.org/10.3390/foods13111622 (registering DOI) - 23 May 2024
Abstract
Bixin is the main carotenoid found in the outer portion of the seeds of Bixa orellana L., commercially known as annatto. This compound is industrially employed in pharmaceutical, cosmetic, and food formulations as a natural dye to replace chemical additives. This study aimed [...] Read more.
Bixin is the main carotenoid found in the outer portion of the seeds of Bixa orellana L., commercially known as annatto. This compound is industrially employed in pharmaceutical, cosmetic, and food formulations as a natural dye to replace chemical additives. This study aimed to extract bixin from annatto seeds and obtain encapsulated bixin in a powder form, using freeze-drying encapsulation and maltodextrin as encapsulating agent. Bixin was extracted from annatto seeds employing successive washing with organic solvents, specifically hexane and methanol (1:1 v/v), followed by ethyl acetate and dichloromethane for subsequent washes, to effectively remove impurities and enhance bixin purity, and subsequent purification by crystallization, reaching 1.5 ± 0.2% yield (or approximately 15 mg of bixin per gram of seeds). Bixin was analyzed spectrophotometrically in different organic solvents (ethanol, isopropyl alcohol, dimethylsulfoxide, chloroform, hexane), and the solvents chosen were chloroform (used to solubilize bixin during microencapsulation) and hexane (used for spectrophotometric determination of bixin). Bixin was encapsulated according to a 22 experimental design to investigate the influence of the concentration of maltodextrin (20 to 40%) and bixin-to-matrix ratio (1:20 to 1:40) on the encapsulation efficiency (EE%) and solubility of the encapsulated powder. Higher encapsulation efficiency was obtained at a maltodextrin concentration of 40% w/v and a bixin/maltodextrin ratio of 1:20, while higher solubility was observed at a maltodextrin concentration of 20% w/v for the same bixin/maltodextrin ratio. The encapsulation of this carotenoid by means of freeze-drying is thus recognized as an innovative and promising approach to improve its stability for further processing in pharmaceutical and food applications. Full article
(This article belongs to the Section Food Nutrition)
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17 pages, 3374 KiB  
Article
Drought Responses in Poaceae: Exploring the Core Components of the ABA Signaling Pathway in Setaria italica and Setaria viridis
by Isabella Peres de Oliveira, Camila Schaaf and Nathalia de Setta
Plants 2024, 13(11), 1451; https://doi.org/10.3390/plants13111451 (registering DOI) - 23 May 2024
Abstract
Drought severely impacts plant development and reproduction, reducing biomass and seed number, and altering flowering patterns. Drought-tolerant Setaria italica and Setaria viridis species have emerged as prominent model species for investigating water deficit responses in the Poaceae family, the most important source of [...] Read more.
Drought severely impacts plant development and reproduction, reducing biomass and seed number, and altering flowering patterns. Drought-tolerant Setaria italica and Setaria viridis species have emerged as prominent model species for investigating water deficit responses in the Poaceae family, the most important source of food and biofuel biomass worldwide. In higher plants, abscisic acid (ABA) regulates environmental stress responses, and its signaling entails interactions between PYR/PYL/RCAR receptors and clade A PP2C phosphatases, which in turn modulate SnRK2 kinases via reversible phosphorylation to activate ABA-responsive genes. To compare the diversity of PYR/PYL/RCAR, PP2C, and SnRK2 between S. italica and S. viridis, and their involvement in water deficit responses, we examined gene and regulatory region structures, investigated orthology relationships, and analyzed their gene expression patterns under water stress via a meta-analysis approach. Results showed that coding and regulatory sequences of PYR/PYL/RCARs, PP2Cs, and SnRK2s are highly conserved between Setaria spp., allowing us to propose pairs of orthologous genes for all the loci identified. Phylogenetic relationships indicate which clades of Setaria spp. sequences are homologous to the functionally well-characterized Arabidopsis thaliana PYR/PYL/RCAR, PP2C, and SnRK2 genes. Gene expression analysis showed a general downregulation of PYL genes, contrasting with upregulation of PP2C genes, and variable expression modulation of SnRK2 genes under drought stress. This complex network implies that ABA core signaling is a diverse and multifaceted process. Through our analysis, we identified promising candidate genes for further functional characterization, with great potential as targets for drought resistance studies, ultimately leading to advances in Poaceae biology and crop-breeding strategies. Full article
(This article belongs to the Special Issue The Role of Abscisic Acid (ABA) Machinery in Stress Response)
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36 pages, 7380 KiB  
Article
A Digital Twin Framework for Simulating Distributed Energy Resources in Distribution Grids
by Magnus Værbak, Joy Dalmacio Billanes, Bo Nørregaard Jørgensen and Zheng Ma
Energies 2024, 17(11), 2503; https://doi.org/10.3390/en17112503 (registering DOI) - 23 May 2024
Abstract
As the adoption of distributed energy resources (DERs) grows, the future of electricity distribution systems is confronted with significant challenges. These challenges arise from the transformation of consumers into prosumers and the resulting increased system complexity, leading to more pressure on the distribution [...] Read more.
As the adoption of distributed energy resources (DERs) grows, the future of electricity distribution systems is confronted with significant challenges. These challenges arise from the transformation of consumers into prosumers and the resulting increased system complexity, leading to more pressure on the distribution grids. To address this complexity, a Digital Twin framework is designed to simulate DERs within distribution grids effectively. This framework is structured around four key modules: DERs, the electricity distribution grid, the energy management system, and the consumers. It incorporates a communication interface to facilitate interactions among these modules and includes considerations for grid topologies and demand-side configurations. The framework allows for the exploration of various DER adoption rates and capacities. The validation of this framework involves case studies on two Danish distribution grids with scenarios incorporating rooftop photovoltaic (PV) systems, batteries, and electric vehicles, considering different combinations of these technologies. The findings demonstrate the framework’s ability to depict the states of the grid, PV systems, electric vehicles, and battery systems with a 10 min resolution over periods ranging from a day to over a decade. Full article
(This article belongs to the Section F2: Distributed Energy System)
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Review
The Impact of Artificial Intelligence on Microbial Diagnosis
by Ahmad Alsulimani, Naseem Akhter, Fatima Jameela, Rnda I. Ashgar, Arshad Jawed, Mohammed Ahmed Hassani and Sajad Ahmad Dar
Microorganisms 2024, 12(6), 1051; https://doi.org/10.3390/microorganisms12061051 (registering DOI) - 23 May 2024
Abstract
Traditional microbial diagnostic methods face many obstacles such as sample handling, culture difficulties, misidentification, and delays in determining susceptibility. The advent of artificial intelligence (AI) has markedly transformed microbial diagnostics with rapid and precise analyses. Nonetheless, ethical considerations accompany AI adoption, necessitating measures [...] Read more.
Traditional microbial diagnostic methods face many obstacles such as sample handling, culture difficulties, misidentification, and delays in determining susceptibility. The advent of artificial intelligence (AI) has markedly transformed microbial diagnostics with rapid and precise analyses. Nonetheless, ethical considerations accompany AI adoption, necessitating measures to uphold patient privacy, mitigate biases, and ensure data integrity. This review examines conventional diagnostic hurdles, stressing the significance of standardized procedures in sample processing. It underscores AI’s significant impact, particularly through machine learning (ML), in microbial diagnostics. Recent progressions in AI, particularly ML methodologies, are explored, showcasing their influence on microbial categorization, comprehension of microorganism interactions, and augmentation of microscopy capabilities. This review furnishes a comprehensive evaluation of AI’s utility in microbial diagnostics, addressing both advantages and challenges. A few case studies including SARS-CoV-2, malaria, and mycobacteria serve to illustrate AI’s potential for swift and precise diagnosis. Utilization of convolutional neural networks (CNNs) in digital pathology, automated bacterial classification, and colony counting further underscores AI’s versatility. Additionally, AI improves antimicrobial susceptibility assessment and contributes to disease surveillance, outbreak forecasting, and real-time monitoring. Despite a few limitations, integration of AI in diagnostic microbiology presents robust solutions, user-friendly algorithms, and comprehensive training, promising paradigm-shifting advancements in healthcare. Full article
(This article belongs to the Special Issue Detection and Identification of Pathogenic Bacteria and Viruses)
13 pages, 1321 KiB  
Review
Exogenous and Endogenous Molecules Potentially Proficient to Modulate Mitophagy in Cardiac Disorders
by Moeka Nakashima, Naoko Suga and Satoru Matsuda
Kinases Phosphatases 2024, 2(2), 166-178; https://doi.org/10.3390/kinasesphosphatases2020010 - 23 May 2024
Abstract
It has been proposed that procedures which upregulate mitochondrial biogenesis and autophagy by replacing damaged mitochondria with healthy ones may prevent the development of several heart diseases. A member of serine and threonine kinases, adenosine monophosphate-activated protein kinase (AMPK), could play essential roles [...] Read more.
It has been proposed that procedures which upregulate mitochondrial biogenesis and autophagy by replacing damaged mitochondria with healthy ones may prevent the development of several heart diseases. A member of serine and threonine kinases, adenosine monophosphate-activated protein kinase (AMPK), could play essential roles in the autophagy and/or mitophagy. AMPK is widely distributed in various cells, which might play diverse regulatory roles in different tissues and/or organs. In fact, changes in the kinase function of AMPK due to alteration of activity have been linked with diverse pathologies including cardiac disorders. AMPK can regulate mitochondrial biogenesis via peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PGC1α) signaling and also improve oxidative mitochondrial metabolism through inhibition of mechanistic/mammalian target of rapamycin (mTOR) pathway, which may also modulate the autophagy/mitophagy through autophagy activating kinase 1 (ULK1) and/or transforming growth factor beta (TGF-β) signaling. Therefore, the modulation of AMPK in autophagy/mitophagy pathway might probably be thought as a therapeutic tactic for several cardiac disorders. As kinases are amongst the most controllable proteins, in general, the design of small molecules targeting kinases might be an eye-catching avenue to modulate cardiac function. Some analyses of the molecular biology underlying mitophagy suggest that nutraceuticals and/or drugs including specific AMPK modulator as well as physical exercise and/or dietary restriction that could modulate AMPK may be useful against several heart diseases. These observations may virtually be limited to preclinical studies. Come to think of these, however, it is speculated that some nutraceutical regimens might have positive potential for managing some of cardiac disorders. Full article
(This article belongs to the Special Issue Human Protein Kinases: Development of Small-Molecule Therapies)
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28 pages, 2501 KiB  
Article
Does “Paper Oil” Matter? Energy Markets’ Financialization and Co-Movements with Equity Markets
by Bahattin Büyükşahin and Michel A. Robe
Commodities 2024, 3(2), 197-224; https://doi.org/10.3390/commodities3020013 - 23 May 2024
Abstract
We revisit, and document new facts regarding, the financialization of U.S. energy markets in 2000–2010. We show that, after controlling for macroeconomic factors and physical energy market fundamentals, the strength of energy markets’ co-movements with the U.S. stock market is positively related to [...] Read more.
We revisit, and document new facts regarding, the financialization of U.S. energy markets in 2000–2010. We show that, after controlling for macroeconomic factors and physical energy market fundamentals, the strength of energy markets’ co-movements with the U.S. stock market is positively related to the energy paper market activity of hedge funds that trade both asset classes. This relation weakens when credit risk is elevated. We find, in contrast, no link with the aggregate positions of commodity index traders in energy futures markets. Our findings have implications for the ongoing debate regarding the financialization of commodities. Full article
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21 pages, 12498 KiB  
Article
Effect of Annealing Temperature on Microstructure and Properties of Solid Solution Extruded Mg–2.0Zn–1.0Y–0.5Zr Alloys
by Junguang He, Zhenfei Cheng, Jiuba Wen, Peiwu Tian, Wuyun Feng, Xiangyang Zheng and Yuan Gong
Alloys 2024, 3(2), 140-160; https://doi.org/10.3390/alloys3020008 - 23 May 2024
Abstract
In this investigation, the effects of different annealing temperatures (180, 200, 220, 240, 260, and 280 °C) on the microstructure evolution and properties of an extruded Mg–2.0Zn–1.0Y–0.5Zr (wt%) magnesium alloys were determined. Optical microscopy (OM), scanning electron microscopy (SEM), immersion corrosion, electrochemical corrosion [...] Read more.
In this investigation, the effects of different annealing temperatures (180, 200, 220, 240, 260, and 280 °C) on the microstructure evolution and properties of an extruded Mg–2.0Zn–1.0Y–0.5Zr (wt%) magnesium alloys were determined. Optical microscopy (OM), scanning electron microscopy (SEM), immersion corrosion, electrochemical corrosion experiments, and tensile testing were performed. Research has found that combining hot extrusion with subsequent low-temperature annealing significantly improves the strength, plasticity, and corrosion resistance of alloys due to grain refinement and a reduced dislocation density. The alloy was completely recrystallized at an annealing temperature of 240 °C for 4 h after solid solution extrusion, and the grains were fine and uniform, demonstrating the best comprehensive properties. Its corrosion rate, ultimate tensile strength, yield strength, and elongation were 0.454 ± 0.023 mm/y, 346.7 ± 8.9 MPa, 292.4 ± 6.9 MPa, and 19.0 ± 0.4%, respectively. The corrosion mechanism of the specimens under extruded and annealed conditions was analyzed. After annealing at 240 °C for 4 h, the dislocation and bimodal grain structure of the samples were almost eliminated, resulting in uniform and fine grains, which were conducive to the formation of a more uniform and denser oxide film, thus improving the corrosion resistance of the alloy. Full article
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17 pages, 1475 KiB  
Article
Exploring the Multidimensional Characteristics of Selected and Non-Selected White British and British South Asian Youth Cricketers: An Exploratory Machine Learning Approach
by Tom Brown, Robert Cook, Lewis A. Gough, Irfan Khawaja, Alexander B. T. McAuley and Adam L. Kelly
Youth 2024, 4(2), 718-734; https://doi.org/10.3390/youth4020048 - 23 May 2024
Abstract
Selection into a County Age Group (CAG; under 10–18) programme is the first step for young aspiring cricketers on their journey to achieving professional status. Recognising that the British South Asian (BSA) community represents 30% of those who play recreational cricket compared to [...] Read more.
Selection into a County Age Group (CAG; under 10–18) programme is the first step for young aspiring cricketers on their journey to achieving professional status. Recognising that the British South Asian (BSA) community represents 30% of those who play recreational cricket compared to less than 5% of those who are selected to play at the professional level in England and Wales, it is important to better understand the characteristics of selected and non-selected players based on ethnicity to identify potential sociocultural differences during selection. Thus, the purpose of this study was to investigate the multidimensional factors that differentiated between selected and non-selected adolescent male cricketers as well as between White British (WB) and BSA selected players into a CAG programme. A total of 82 male participants aged between 14 and 17 years were included (mean = 15.3 ± 1.1 years: selected n = 33 and non-selected n = 49: WB n = 34, BSA n = 44, Other n = 4). In total, 104 characteristics were measured over nine tests, which were subsequently placed into five overarching factors: (a) physiological and anthropometrical, (b) perceptual–cognitive expertise, (c) psychological, (d) participation history, and (e) socio-cultural influences. A Bayesian binomial regression was performed in rSTAN using a weak normal prior to highlight differentiators in selection as well as differences between WB and BSA selected players. The results highlighted that athleticism, wellbeing and cohesion, the number of older brothers, and being born in birth quarters two and three were positively correlated with player selection into a CAG. Conversely, increases in psychological scores, a greater number of younger brothers and older sisters, as well as antisocial behaviour resulted in a reduced chance of player selection. Finally, several developmental factors (i.e., athleticism, wellbeing and cohesion, psychological distress, and levels of anti-social behaviour) differed based on ethnicity. These exploratory findings serve as a useful opening to highlight there are important differences to consider based on selection and ethnicity in CAG cricket. Full article
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Article
Immunotherapy Applications for Thymine Dimers and WT1 Antigen in Renal Cancers: A Comparative Statistical Analysis
by Silviu Constantin Latcu, Razvan Bardan, Alin Adrian Cumpanas, Vlad Barbos, Flavia Baderca, Pusa Nela Gaje, Raluca Amalia Ceausu, Serban Comsa, Cristina-Stefania Dumitru, Raluca Dumache, Talida Georgiana Cut, Voichita Elena Lazureanu and Ligia Petrica
J. Pers. Med. 2024, 14(6), 557; https://doi.org/10.3390/jpm14060557 (registering DOI) - 23 May 2024
Abstract
Renal cell carcinoma (RCC) remains incurable in advanced stages. Biomarkers have proven to be quite useful in cancer therapeutics. Herein, we provide a comparative/integrative statistical analysis of seminal immunohistochemistry (IHC) findings for Wilms’ Tumor 1 antigen (WT1) and thymine dimers (TDs), emerging as [...] Read more.
Renal cell carcinoma (RCC) remains incurable in advanced stages. Biomarkers have proven to be quite useful in cancer therapeutics. Herein, we provide a comparative/integrative statistical analysis of seminal immunohistochemistry (IHC) findings for Wilms’ Tumor 1 antigen (WT1) and thymine dimers (TDs), emerging as atypical, yet promising, potential biomarkers for RCCs. We assessed WT1/TD reactivity in adult RCC tumor cells, tumor microenvironment (TME), and tumor-adjacent healthy renal tissue (HRT). WT1 positivity was scarce and strictly nuclear in tumor cells, whereas TD-reactive tumor tissues were prevalent. We report statistically significant positive correlations between the density of reactive RCC cellularity and the intensity of nuclear staining for both biomarkers (WT1 − rho = 0.341, p-value = 0.036; TDs − rho = 0.379, p-value = 0.002). RCC stromal TME TD-positivity was much more frequent than WT1 reactivity, apparently proportional to that of the proper RCC cellularity and facilitated by extensive RCC inflammatory infiltration. TDs exhibited nuclear reactivity for most TME cell lines, while RCC TME WT1 expression was rare and inconsistent. In HRTs, TDs were entirely restricted to renal tubular cells, the likely cellular progenitor of most conventional RCC subtypes. In lieu of proper validation, these early findings have significant implications regarding the origins/biology of RCCs and may inform RCC therapeutics, both accounting for the high frequency of immunotherapy-permissive frameshift indels in RCCs, but also hinting at novel predictive clinical tools for WT1-targeted immunotherapy. Overall, the current study represents a meek yet hopefully significant step towards understanding the molecular biology and potential therapeutic targets of RCCs. Full article
(This article belongs to the Special Issue Urologic Oncology: Biomarkers and Targeted Therapies)
14 pages, 899 KiB  
Review
Genetics and Epigenetics in Acquired Hemophilia A: From Bench to Bedside
by Nikolaos Evangelidis, Nikolaos Kotsiou, Paschalis Evangelidis, Vlasios I. Alevizopoulos, Iasonas Dermitzakis, Sofia Chissan, Sofia Vakalopoulou and Eleni Gavriilaki
Curr. Issues Mol. Biol. 2024, 46(6), 5147-5160; https://doi.org/10.3390/cimb46060309 - 23 May 2024
Abstract
Acquired hemophilia A (AHA) is a bleeding disorder characterized by the immunological inhibition of factor VIII (FVIII) of the hemostatic pathway leading to hemorrhagic events. Different domains of FVIII are the target of autoantibodies (mainly immunoglobulin (Ig) G) leading to the deficiency of [...] Read more.
Acquired hemophilia A (AHA) is a bleeding disorder characterized by the immunological inhibition of factor VIII (FVIII) of the hemostatic pathway leading to hemorrhagic events. Different domains of FVIII are the target of autoantibodies (mainly immunoglobulin (Ig) G) leading to the deficiency of FVIII. Several factors have been associated with the activation of the auto-immunity towards FVIII. Emerging evidence implicates CD4+ T cell activation in mediating this autoimmune response, with their involvement like that observed in congenital hemophilia A. Several genes such as HLA II DRB*16, DQB1*0502, and CTLA-4 + 49 are responsible for the pathogenesis of AHA. Epigenetic modifications and mainly long-coding RNAS (lncRNAs) are potentially contributing to the pathogenesis of AHA. The treatment approach of AHA includes the management of acute bleeding events and the administration of immunosuppressive medications. This review aimed to summarize the published data on the genetics and epigenetics of AHA. The severity and the mortality of this disease are creating an emerging need for further research in the field of the genetics and epigenetics of acquired hemorrhagic disorder. Full article
(This article belongs to the Special Issue Genomic Analysis of Common Disease)
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16 pages, 4922 KiB  
Article
Identification of Key Hypolipidemic Components and Exploration of the Potential Mechanism of Total Flavonoids from Rosa sterilis Based on Network Pharmacology, Molecular Docking, and Zebrafish Experiment
by Boxiao Wu, Churan Li, Xulu Luo, Huan Kan, Yonghe Li, Yingjun Zhang, Xiaoping Rao, Ping Zhao and Yun Liu
Curr. Issues Mol. Biol. 2024, 46(6), 5131-5146; https://doi.org/10.3390/cimb46060308 - 23 May 2024
Abstract
Hyperlipidemia is a prevalent chronic metabolic disease that severely affects human health. Currently, commonly used clinical therapeutic drugs are prone to drug dependence and toxic side effects. Dietary intervention for treating chronic metabolic diseases has received widespread attention. Rosa sterilis is a characteristic [...] Read more.
Hyperlipidemia is a prevalent chronic metabolic disease that severely affects human health. Currently, commonly used clinical therapeutic drugs are prone to drug dependence and toxic side effects. Dietary intervention for treating chronic metabolic diseases has received widespread attention. Rosa sterilis is a characteristic fruit tree in China whose fruits are rich in flavonoids, which have been shown to have a therapeutic effect on hyperlipidemia; however, their exact molecular mechanism of action remains unclear. Therefore, this study aimed to investigate the therapeutic effects of R. sterilis total flavonoid extract (RS) on hyperlipidemia and its possible mechanisms. A hyperlipidemic zebrafish model was established using egg yolk powder and then treated with RS to observe changes in the integral optical density in the tail vessels. Network pharmacology and molecular docking were used to investigate the potential mechanism of action of RS for the treatment of hyperlipidemia. The results showed that RS exhibited favorable hypolipidemic effects on zebrafish in the concentration range of 3.0–30.0 μg/mL in a dose-dependent manner. Topological and molecular docking analyses identified HSP90AA1, PPARA, and MMP9 as key targets for hypolipidemic effects, which were exerted mainly through lipolytic regulation of adipocytes and lipids; pathway analysis revealed enrichment in atherosclerosis, chemical carcinogenic-receptor activation pathways in cancers, and proteoglycans in prostate cancer and other cancers. Mover, chinensinaphthol possessed higher content and better target binding ability, which suggested that chinensinaphthol might be an important component of RS with hypolipidemic active function. These findings provide a direction for further research on RS interventions for the treatment of hyperlipidemia. Full article
(This article belongs to the Special Issue A Focus on the Molecular Basis of Cardiovascular Diseases)
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17 pages, 3469 KiB  
Article
Enhancement of Biogas (Methane) Production from Cow Dung Using a Microbial Electrochemical Cell and Molecular Characterization of Isolated Methanogenic Bacteria
by Puja Bhatt, Pranita Poudyal, Pradip Dhungana, Bikram Prajapati, Suman Bajracharya, Amar Prasad Yadav, Tribikram Bhattarai, Lakshmaiah Sreerama and Jarina Joshi
Biomass 2024, 4(2), 455-471; https://doi.org/10.3390/biomass4020023 - 23 May 2024
Abstract
Biogas has long been used as a household cooking fuel in many tropical counties, and it has the potential to be a significant energy source beyond household cooking fuel. In this study, we describe the use of low electrical energy input in an [...] Read more.
Biogas has long been used as a household cooking fuel in many tropical counties, and it has the potential to be a significant energy source beyond household cooking fuel. In this study, we describe the use of low electrical energy input in an anaerobic digestion process using a microbial electrochemical cell (MEC) to promote methane content in biogas at 18, 28, and 37 °C. Although the maximum amount of biogas production was at 37 °C (25 cm3), biogas could be effectively produced at lower temperatures, i.e., 18 (13 cm3) and 28 °C (19 cm3), with an external 2 V power input. The biogas production of 13 cm3 obtained at 18 °C was ~65-fold higher than the biogas produced without an external power supply (0.2 cm3). This was further enhanced by 23% using carbon-nanotubes-treated (CNT) graphite electrodes. This suggests that the MEC can be operated at as low as 18 °C and still produce significant amounts of biogas. The share of CH4 in biogas produced in the controls was 30%, whereas the biogas produced in an MEC had 80% CH4. The MEC effectively reduced COD to 42%, whereas it consumed 98% of reducing sugars. Accordingly, it is a suitable method for waste/manure treatment. Molecular characterization using 16s rRNA sequencing confirmed the presence of methanogenic bacteria, viz., Serratia liquefaciens and Zoballella taiwanensis, in the inoculum used for the fermentation. Consistent with recent studies, we believe that electromethanogenesis will play a significant role in the production of value-added products and improve the management of waste by converting it to energy. Full article
(This article belongs to the Topic Advances in Biomass Conversion)
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14 pages, 232 KiB  
Perspective
Hearing Loss and Cognitive Decline in the Aging Population: Emerging Perspectives in Audiology
by Naveen K. Nagaraj
Audiol. Res. 2024, 14(3), 479-492; https://doi.org/10.3390/audiolres14030040 - 23 May 2024
Abstract
In this perspective article, the author explores the connections between hearing loss, central auditory processing, and cognitive decline, offering insights into the complex dynamics at play. Drawing upon a range of studies, the relationship between age-related central auditory processing disorders and Alzheimer’s disease [...] Read more.
In this perspective article, the author explores the connections between hearing loss, central auditory processing, and cognitive decline, offering insights into the complex dynamics at play. Drawing upon a range of studies, the relationship between age-related central auditory processing disorders and Alzheimer’s disease is discussed, with the aim of enhancing our understanding of these interconnected conditions. Highlighting the evolving significance of audiologists in the dual management of cognitive health and hearing impairments, the author focuses on their role in identifying early signs of cognitive impairment and evaluates various cognitive screening tools used in this context. The discussion extends to adaptations of hearing assessments for older adults, especially those diagnosed with dementia, and highlights the significance of objective auditory electrophysiological tests. These tests are presented as vital in assessing the influence of aging and Alzheimer’s disease on auditory processing capabilities and to signal cognitive dysfunction. The article underscores the critical role of audiologists in addressing the challenges faced by the aging population. The perspective calls for further research to improve diagnostic and therapeutic strategies in audiology, and emphasizes the need for a multidisciplinary approach in tackling the nexus of hearing loss, auditory processing, and cognitive decline. Full article
(This article belongs to the Special Issue Cognitive Decline within the Audiology Scope of Practice)
16 pages, 1806 KiB  
Article
Insights into Key Biometric, Physiological and Biochemical Markers of Magnesium (Mg) Deficiency Stress in the Halophyte Cakile maritima
by Hayet Houmani, Rabaa Hidri, Nèjia Farhat and Ahmed Debez
Stresses 2024, 4(2), 342-357; https://doi.org/10.3390/stresses4020022 - 23 May 2024
Abstract
Magnesium is a key element for plant growth and development. Plant responses to Mg deficiency were well investigated, especially in glycophytes. Such responses include a reduction in plant growth and biomass allocation between shoots and roots, photosynthates partitioning from source to sink organs, [...] Read more.
Magnesium is a key element for plant growth and development. Plant responses to Mg deficiency were well investigated, especially in glycophytes. Such responses include a reduction in plant growth and biomass allocation between shoots and roots, photosynthates partitioning from source to sink organs, the accumulation of carbohydrates, and an induction of several Mg transporters. Some physiological and biochemical parameters are good markers of Mg deficiency stress even though they are not well investigated. In the present study, the halophyte Cakile maritima was subjected to Mg shortage, and several Mg stress indices were analyzed. Our data showed that Mg starvation affected shoot and plant length, leaf number, and plant organ growth. A significant decrease in chlorophyll synthesis and photosynthetic activity was also recorded. Mg deficiency triggered oxidative damage as electrolyte leakage and lipid peroxidation were increased by Mg deficiency while the membrane stability index decreased. For a deeper understanding of the effect of Mg starvation on C. maritima, several tolerance stress indices were evaluated, demonstrating a negative impact of Mg stress on almost all those parameters. This study provided important insights on several markers of Mg deficiency stress, which were informative by themselves as unique and early signals of Mg deficiency stress in this halophyte. Full article
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17 pages, 4080 KiB  
Article
TRI14 Is Critical for Fusarium graminearum Infection and Spread in Wheat
by Guixia Hao, Robert H. Proctor, Daren W. Brown, Nicholas A. Rhoades, Todd A. Naumann, HyeSeon Kim, Santiago Gutiėrrez and Susan P. McCormick
Appl. Microbiol. 2024, 4(2), 839-855; https://doi.org/10.3390/applmicrobiol4020058 - 23 May 2024
Abstract
Trichothecenes are sesquiterpenoid toxins produced by diverse ascomycetes, including Fusarium. The trichothecene analog deoxynivalenol (DON) produced by the Fusarium head blight (FHB) pathogen Fusarium graminearum is a virulence factor on wheat and a major food and feed safety concern. In Fusarium, [...] Read more.
Trichothecenes are sesquiterpenoid toxins produced by diverse ascomycetes, including Fusarium. The trichothecene analog deoxynivalenol (DON) produced by the Fusarium head blight (FHB) pathogen Fusarium graminearum is a virulence factor on wheat and a major food and feed safety concern. In Fusarium, the trichothecene biosynthetic gene (TRI) cluster consists of 7–14 genes. Most TRI cluster genes are conserved and their specific roles in trichothecene biosynthesis have been determined. An exception is TRI14, which is not required for DON synthesis in vitro but is required for spread of F. graminearum in wheat heads. In the current study, gene expression analyses revealed that TRI14 was highly induced in infected wheat heads. We demonstrated that TRI14 was not only required for F. graminearum spread but also important for initial infection in wheat. Although a prior study did not detect DON in infected seeds, our analyses showed significantly less DON and fungal biomass in TRI14-mutant (designated ∆tri14)-inoculated heads than wild-type-inoculated heads. Gene expression comparison showed that the level of expression of TRI genes was similar in the wheat tissues infected with ∆tri14 or the wild type, indicating the reduced toxin levels caused by ∆tri14 may be due to less fungal growth. ∆tri14 also caused less lesion and grew less in wheat coleoptiles than the wild type. The growth of ∆tri14 in carboxymethylcellulose medium was more sensitive to hydrogen peroxide than the wild type. The data suggest that TRI14 plays a critical role in F. graminearum growth, and potentially protects the fungus from plant defense compounds. Full article
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21 pages, 1021 KiB  
Article
Peak-Season Price Adjustments in Shared Accommodation: The Role of Platform-Certified Signals and User-Generated Signals
by Xiangyu Wang, Yipeng Liu, Shengli Li and Haoyu Wang
J. Theor. Appl. Electron. Commer. Res. 2024, 19(2), 1164-1184; https://doi.org/10.3390/jtaer19020060 - 23 May 2024
Abstract
This study investigates the factors influencing landlords’ price adjustments during peak seasons on accommodation-sharing platforms, focusing on the role of platform-certified and user-generated signals. Utilizing a comprehensive dataset of 11,795 observations from a leading Chinese accommodation-sharing platform, we employ binary logit models to [...] Read more.
This study investigates the factors influencing landlords’ price adjustments during peak seasons on accommodation-sharing platforms, focusing on the role of platform-certified and user-generated signals. Utilizing a comprehensive dataset of 11,795 observations from a leading Chinese accommodation-sharing platform, we employ binary logit models to investigate how these signals affect landlords’ pricing strategies during “festival” and “weekend” peak times. Our analysis reveals that both platform-certified signals (such as “Preferred House” badges) and user-generated signals (such as customer satisfaction ratings) significantly increase the probability and magnitude of price adjustments during both festival and weekend peak seasons. Specifically, houses with a “Preferred” status are up to 28 times more likely to have price hikes during weekends compared to non-preferred ones. Further analysis reveals that higher levels of landlord professionalism, measured by the number of properties managed, amplifies the impact of user-generated signals on both the probability and magnitude of price adjustments. However, as the level of professionalism increases, this effect diminishes, indicating that highly professional landlords may have less flexibility to adjust prices due to already-high baseline rates. Interestingly, landlord professionalism did not significantly influence the impact of platform-certified signals on price adjustments, suggesting that the influence of such signals remains consistent across different levels of landlord professionalism. These results underscore the significant roles that both types of signals and landlord professionalism play in shaping pricing strategies, offering valuable insights for platform management and policy formulation aimed at enhancing consumer trust and competitive dynamics in the sharing economy. Full article
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12 pages, 1991 KiB  
Article
Soil and Urine Mercury Levels in Secocha: A Case Study of Artisanal and Small-Scale Gold Mining in Peru
by Rolando Quispe Aquino, Fredy Fortunato García Zúñiga and Aaron Malone
Mining 2024, 4(2), 389-400; https://doi.org/10.3390/mining4020022 - 23 May 2024
Abstract
In recent decades, artisanal and small-scale gold mining (ASGM) has spurred population and economic growth in the small rural communities in which it is located, along with causing contamination of the soil, air, and water with grave effects on human health due to [...] Read more.
In recent decades, artisanal and small-scale gold mining (ASGM) has spurred population and economic growth in the small rural communities in which it is located, along with causing contamination of the soil, air, and water with grave effects on human health due to the uncontrolled use of mercury for gold processing activities. This study analyzes the levels of mercury in Secocha, an ASGM community in Arequipa, Peru. A total of 44 soil samples were taken from two ASGM commercial-extractive zones (n = 18) and non-processing urban zones (n = 26). Soil mercury analysis with atomic absorption spectrometry revealed average mercury levels of 86.11 mg/kg in commercial-extractive zone I, where ore processing has occurred for about 17 years, and mercury levels of 43.81 mg/kg in commercial-extractive zone II, where processing has occurred for about 7 years. In the urban zone, the average mercury level was 9.53 mg/kg. The average mercury concentrations for each zone exceed the relevant environmental quality standards established by the Peruvian Ministry of the Environment. In addition, urine samples were obtained from 15 miners and 15 people from the general urban population (non-miners). The average mercury level in the urine of miners was 7.04 µg/L, and in the urine of non-miners it was 0.49 µg/L. In both cases, the mercury urine level did not exceed the limits established by WHO and the Peruvian Ministry of Health, though miners’ elevated levels do raise concerns. Full article
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13 pages, 6942 KiB  
Article
Monophyly or Homoplasy? The Relationships of a Rare New Species of Cambeva (Siluriformes: Trichomycteridae) from the Brazilian Atlantic Forest with a Bicolored Caudal Pattern
by Wilson J. E. M. Costa, Caio R. M. Feltrin, José Leonardo O. Mattos and Axel M. Katz
Taxonomy 2024, 4(2), 341-353; https://doi.org/10.3390/taxonomy4020017 - 23 May 2024
Abstract
The Brazilian Atlantic Forest, one the five main biodiversity hotspots in the world, still houses many organisms that are rare and unknown to science, mostly concentrated in mountain ranges. Herein, we describe a rare new species of Cambeva from the Rio Tietê drainage [...] Read more.
The Brazilian Atlantic Forest, one the five main biodiversity hotspots in the world, still houses many organisms that are rare and unknown to science, mostly concentrated in mountain ranges. Herein, we describe a rare new species of Cambeva from the Rio Tietê drainage at the Serra da Mantiqueira, exhibiting a caudal fin color pattern comprising a light-yellowish–white bar posteriorly edged by a black pigmented area. A similar color pattern was described for C. castroi, C. diabola, and C. melanoptera, also endemic to the Rio Paraná basin, and considered evidence of close relationships among these three species. However, other morphological characteristics highly suggest that the new species is not closely related to C. castroi, C. diabola, and C. melanoptera). Herein, we perform a molecular phylogenetic analysis using two mitochondrial genes and one nuclear gene, including all species with that bicolored caudal pattern. The analysis strongly supports the new species as a member of the alpha-clade, and therefore as distantly related to those three species belonging to the beta-clade, indicating that this color pattern has homoplastically arisen in Cambeva. The data reported here reinforce the urgent need for field studies to better understand the different evolutionary patterns found in the genus, since an intense process of environmental degradation is in course. Full article
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30 pages, 9528 KiB  
Article
Comparative Numerical Analysis of Keyhole Shape and Penetration Depth in Laser Spot Welding of Aluminum with Power Wave Modulation
by Saeid SaediArdahaei and Xuan-Tan Pham
Thermo 2024, 4(2), 222-251; https://doi.org/10.3390/thermo4020013 - 23 May 2024
Abstract
Keyhole mode laser welding is a valuable technique for welding thick materials in industrial applications. However, its susceptibility to fluctuations and instabilities poses challenges, leading to defects that compromise weld quality. Observing the keyhole during laser welding is challenging due to bright process [...] Read more.
Keyhole mode laser welding is a valuable technique for welding thick materials in industrial applications. However, its susceptibility to fluctuations and instabilities poses challenges, leading to defects that compromise weld quality. Observing the keyhole during laser welding is challenging due to bright process radiation, and existing observation methods are complex and expensive. This paper alternatively presents a novel numerical modeling approach for laser spot welding of aluminum through a modified mixture theory, a modified level-set (LS) method, and a thermal enthalpy porosity technique. The effects of laser parameters on keyhole penetration depth are investigated, with a focus on laser power, spot radius, frequency, and pulse wave modulation in pulsed wave (PW) versus continuous wave (CW) laser welding. PW laser welding involves the careful modulation of power waves, specifically adjusting the pulse width, pulse number, and pulse shapes. Results indicate a greater than 80 percent increase in the keyhole penetration depth with higher laser power, pulse width, and pulse number, as well as decreased spot radius. Keyhole instabilities are also more pronounced with higher pulse width/numbers and frequencies. Notably, the rectangular pulse shape demonstrates substantially deeper penetration compared to CW welding and other pulse shapes. This study enhances understanding of weld pool dynamics and provides insights into optimizing laser welding parameters to mitigate defects and improve weld quality. Full article
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12 pages, 1273 KiB  
Article
In Absentia—Can a Lack of Behaviour Be a Useful Welfare Indicator? An Application to the Captive Management of Livingstone’s Fruit Bats, Pteropus livingstonii
by Morgan J. Edwards, Charlotte A. Hosie, Laura Naidenov, Eluned Price, Tessa E. Smith, Dominic Wormell and Christina R. Stanley
J. Zool. Bot. Gard. 2024, 5(2), 226-237; https://doi.org/10.3390/jzbg5020016 - 23 May 2024
Abstract
Non-invasive behavioural indicators of welfare can be particularly useful for managing captive breeding populations of endangered species; these allow individual welfare to be monitored and reproductive success maximised without the need for capture and restraint methods. However, most studies focus on the behaviours [...] Read more.
Non-invasive behavioural indicators of welfare can be particularly useful for managing captive breeding populations of endangered species; these allow individual welfare to be monitored and reproductive success maximised without the need for capture and restraint methods. However, most studies focus on the behaviours whose presence or frequency can predict welfare issues; the absence of a behaviour is less frequently considered an indicator of welfare. Here, we investigate potential behavioural correlates with welfare-related health states in captive Livingstone’s fruit bats (Pteropus livingstonii), a critically endangered species that can become obese due to restricted space and reduced activity rates compared with wild populations. In this study, behavioural data were collected on males (which are particularly prone to obesity). Hurdle models were used to separately determine the factors predicting the presence or absence of behaviour and the frequency of observed behaviours. Whilst significantly lower levels of vigilance were observed in males with a larger body mass, those with diagnosed health issues were significantly more likely to show an absence of locomotion and foraging behaviour. Males with a lower body mass were also more likely to show an absence of foraging behaviour. Our study demonstrates how the absence of a behaviour can be informative as to an individual’s welfare state. This study has identified behavioural profiles that can be used to flag at-risk individuals, reducing the need for potentially stressful handling and improving our ability to safeguard the welfare of individuals within a large captive group. Full article
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