The 2023 MDPI Annual Report has
been released!
 
14 pages, 3305 KiB  
Communication
Microbial Community and Metabolome Analysis of the Porcine Intestinal Damage Model Induced by the IPEC-J2 Cell Culture-Adapted Porcine Deltacoronavirus (PDCoV) Infection
by Ying Shi, Benqiang Li, Jinghua Cheng, Jie Tao, Pan Tang, Jiajie Jiao and Huili Liu
Microorganisms 2024, 12(5), 874; https://doi.org/10.3390/microorganisms12050874 (registering DOI) - 27 Apr 2024
Abstract
This study was conducted to elucidate the intestinal damage induced by the IPEC-J2 cell culture-passaged PDCoV. The results showed that PDCoV disrupted the intestinal structure and increased intestinal permeability, causing abnormalities in mucosal pathology. Additionally, PDCoV induced an imbalance in the intestinal flora [...] Read more.
This study was conducted to elucidate the intestinal damage induced by the IPEC-J2 cell culture-passaged PDCoV. The results showed that PDCoV disrupted the intestinal structure and increased intestinal permeability, causing abnormalities in mucosal pathology. Additionally, PDCoV induced an imbalance in the intestinal flora and disturbed its stability. Microbial community profiling revealed bacterial enrichment (e.g., Proteobacteria) and reduction (e.g., Firmicutes and Bacteroidetes) in the PDCoV-inoculated piglet model. In addition, metabolomics analysis indicated that 82 named differential metabolites were successfully quantified, including 37 up-regulated and 45 down-regulated metabolites. Chenodeoxycholic acid, sphingosine, and oleanolic aldehyde levels were reduced in PDCoV-inoculated piglets, while phenylacetylglycine and geranylgeranyl-PP levels were elevated. Correlation analysis indicated a negative correlation between Escherichia-Shigella and choline, succinic acid, creatine, phenyllactate, and hippuric acid. Meanwhile, Escherichia-Shigella was positively correlated with acetylcholine, L-Glutamicacid, and N-Acetylmuramate. Roseburia, Lachnospiraceae_UCG-010, Blautia, and Limosilactobacillus were negatively and positively correlated with sphingosine, respectively. These data suggested PDCoV-inoculated piglets exhibited significant taxonomic perturbations in the gut microbiome, which may result in a significantly altered metabolomic profile. Full article
(This article belongs to the Section Veterinary Microbiology)
19 pages, 2761 KiB  
Review
Two-Dimensional Nanomaterials in Hydrogels and Their Potential Bio-Applications
by Zhongnan Wang, Hui Guo, Ji Zhang, Yi Qian and Yanfei Liu
Lubricants 2024, 12(5), 149; https://doi.org/10.3390/lubricants12050149 (registering DOI) - 27 Apr 2024
Abstract
Hydrogels with high hydrophilicity and excellent biocompatibility have been considered as potential candidates for various applications, including biomimetics, sensors and wearable devices. However, their high water content will lead to poor load-bearing and high friction. Currently, two-dimensional (2D) materials have been widely investigated [...] Read more.
Hydrogels with high hydrophilicity and excellent biocompatibility have been considered as potential candidates for various applications, including biomimetics, sensors and wearable devices. However, their high water content will lead to poor load-bearing and high friction. Currently, two-dimensional (2D) materials have been widely investigated as promising nanofillers to improve the mechanical and lubrication performances of hydrogels because of their unique physical–chemical properties. On one hand, 2D materials can participate in the cross-linking of hydrogels, leading to enhanced load-bearing capacity and fatigue resistance, etc.; on the other hand, using 2D materials as nanofillers also brings unique biomedical properties. The combination of hydrogels and 2D materials shows bright prospects for bioapplications. This review focusses on the recent development of high-strength and low-friction hydrogels with the addition of 2D nanomaterials. Functional properties and the underlying mechanisms of 2D nanomaterials are firstly overviewed. Subsequently, the mechanical and friction properties of hydrogels with 2D nanomaterials including graphene oxide, black phosphorus, MXenes, boron nitride, and others are summarized in detail. Finally, the current challenges and potential applications of using 2D nanomaterials in hydrogel, as well as future research, are also discussed. Full article
(This article belongs to the Special Issue Tribology of 2D Nanomaterials)
11 pages, 2605 KiB  
Article
Application of Deep Learning for Real-Time Ablation Zone Measurement in Ultrasound Imaging
by Corinna Zimmermann, Adrian Michelmann, Yannick Daniel, Markus D. Enderle, Nermin Salkic and Walter Linzenbold
Cancers 2024, 16(9), 1700; https://doi.org/10.3390/cancers16091700 (registering DOI) - 27 Apr 2024
Abstract
Background: The accurate delineation of ablation zones (AZs) is crucial for assessing radiofrequency ablation (RFA) therapy’s efficacy. Manual measurement, the current standard, is subject to variability and potential inaccuracies. Aim: This study aims to assess the effectiveness of Artificial Intelligence (AI) in automating [...] Read more.
Background: The accurate delineation of ablation zones (AZs) is crucial for assessing radiofrequency ablation (RFA) therapy’s efficacy. Manual measurement, the current standard, is subject to variability and potential inaccuracies. Aim: This study aims to assess the effectiveness of Artificial Intelligence (AI) in automating AZ measurements in ultrasound images and compare its accuracy with manual measurements in ultrasound images. Methods: An in vitro study was conducted using chicken breast and liver samples subjected to bipolar RFA. Ultrasound images were captured every 15 s, with the AI model Mask2Former trained for AZ segmentation. The measurements were compared across all methods, focusing on short-axis (SA) metrics. Results: We performed 308 RFA procedures, generating 7275 ultrasound images across liver and chicken breast tissues. Manual and AI measurement comparisons for ablation zone diameters revealed no significant differences, with correlation coefficients exceeding 0.96 in both tissues (p < 0.001). Bland–Altman plots and a Deming regression analysis demonstrated a very close alignment between AI predictions and manual measurements, with the average difference between the two methods being −0.259 and −0.243 mm, for bovine liver and chicken breast tissue, respectively. Conclusion: The study validates the Mask2Former model as a promising tool for automating AZ measurement in RFA research, offering a significant step towards reducing manual measurement variability. Full article
(This article belongs to the Special Issue Endoscopic Ultrasound in Cancer Research)
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26 pages, 4076 KiB  
Article
New Insights into Tetraplosphaeriaceae Based on Taxonomic Investigations of Bambusicolous Fungi and Freshwater Fungi
by Hai-Jun Zhao, Mingkwan Doilom, Ausana Mapook, Gennuo Wang, Kevin D. Hyde and Wei Dong
J. Fungi 2024, 10(5), 319; https://doi.org/10.3390/jof10050319 (registering DOI) - 27 Apr 2024
Abstract
Species within Tetraplosphaeriaceae have been frequently documented in recent years with the extensive investigations of microfungi along a latitudinal gradient from north to south in the Asian/Australian region. Both bamboo substrates and freshwater habitats serve as extensive reservoirs, hosting a rich diversity of [...] Read more.
Species within Tetraplosphaeriaceae have been frequently documented in recent years with the extensive investigations of microfungi along a latitudinal gradient from north to south in the Asian/Australian region. Both bamboo substrates and freshwater habitats serve as extensive reservoirs, hosting a rich diversity of fungi that exhibit broad geographical distributions. The most common fungi in these two environments are generally distributed in distinct families. However, our statistics have revealed an intriguingly distinct preference of Tetraplosphaeriaceae species for inhabiting both bamboo substrates and freshwater habitats. The genera Pseudotetraploa (100%) and Triplosphaeria (100%) exhibit a strong preference, followed by Shrungabeeja (71%) and Quadricrura (67%). Our taxonomic and phylogenetic study of microfungi in southern China have identified four additional novel species, viz., Aquatisphaeria bambusae sp. nov., Pseudotetraploa phyllostachydis sp. nov., Pseudotetraploa yangjiangensis sp. nov., and Tetraploa submersa sp. nov. from bamboo substrates and freshwater habitats. In addition, Aquatisphaeria thailandica has previously been documented from freshwater habitats in Thailand; however, we have once again isolated this species from decaying bamboo substrates in Guangdong, China. The new findings substantiate our hypothesis that the preference of Tetraplosphaeriaceae species for colonizing bamboo substrates and freshwater habitats will be more evident through more extensive investigations conducted in such environments. Full article
(This article belongs to the Special Issue Freshwater Fungal Diversity)
15 pages, 8106 KiB  
Article
Tribological Performance Study of Low-Friction PEEK Composites under Different Lubrication Conditions
by Shibo Wu, Zhijun Yan, Haocheng Sun, Ze Liu, Lixia Xue and Tao Sun
Appl. Sci. 2024, 14(9), 3723; https://doi.org/10.3390/app14093723 (registering DOI) - 27 Apr 2024
Abstract
This study introduces a low-friction composite based on PEEK to improve its friction and wear properties. The composite incorporates PTFE as a solid lubricant and utilizes PPTA as a reinforcing material within the PEEK matrix. These components were prepared utilizing a compression molding [...] Read more.
This study introduces a low-friction composite based on PEEK to improve its friction and wear properties. The composite incorporates PTFE as a solid lubricant and utilizes PPTA as a reinforcing material within the PEEK matrix. These components were prepared utilizing a compression molding method, followed by a series of exploratory experiments to identify the optimal preparation conditions for PEEK. This research assesses how the PTFE/PPTA/PEEK composites perform in terms of friction and wear under dry and oil-lubricated conditions. By examining wear tracks using scanning electron microscopy and white light interference microscopy, this study aims to uncover the wear mechanisms of PEEK and its composites under different lubrication scenarios. Results show that the main wear mechanisms for the PTFE/PPTA/PEEK composites and bearing steel are ploughing and adhesive wear. The presence of PPTA helps reduce wear by leveraging its strong fibers and thermal stability, while the coefficient of friction decreases as PTFE creates a smooth, solid lubricating film on the surface. Notably, PEEK composites containing 25 wt% PTFE and 6 wt% PPTA demonstrate the lowest wear rates and reduced coefficient of friction in both dry and oil-lubricated conditions. Full article
(This article belongs to the Special Issue Advanced Composites and Hybrid Materials)
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24 pages, 8810 KiB  
Article
Spatiotemporal Evolution and Transformation Regulation Strategies of Rural Residential Land on the Grand Canal (China)
by Jintao Li and Lei Chu
Land 2024, 13(5), 578; https://doi.org/10.3390/land13050578 (registering DOI) - 27 Apr 2024
Abstract
Land use is an embodiment of human socio-economic activities and represents a bridge between these activities and natural systems. Rural residential land represents a space for rural residents to reside in and exhibits spatial characteristics that evolve over time, which is proof of [...] Read more.
Land use is an embodiment of human socio-economic activities and represents a bridge between these activities and natural systems. Rural residential land represents a space for rural residents to reside in and exhibits spatial characteristics that evolve over time, which is proof of rural socio-economic development. As one of the most developed regions in China, cities along the Beijing–Hangzhou Canal experienced significant changes in rural residential land use from 1990 to 2020. This paper analyses the spatial differentiation of rural residential land in 21 cities on the Grand Canal. Then, it explores the driving factors of this land using spatial grid analysis and the geographic detector model. According to the spatial differentiation characteristics and the driving factors of rural residential land, the study proposed an improved potential model for rural residential land improvement. Lastly, it proposes three different forms of rural residential land based on the results. The study found that (1) the change in rural residential land in the northern part of the Grand Canal was more volatile than that in the southern part. The change in rural residential land from 1990 to 2020 conformed to the pattern of cultivated land–rural residential land–urban construction land. (2) Based on the driving factors of rural residential land, the land is divided into one-dimensional cities, two-dimensional cities, and three-dimensional cities. Circular, linear, and scattered cities of different sizes were affected by socio-economic factors, transportation accessibility, and the natural environment, respectively. (3) Based on the potential scale of rural residential land consolidation, different types of development strategies were proposed through research, including constructing large-scale villages, relocating and reconstructing new villages, and constructing high-quality villages, respectively. Enhancing the scientific planning of rural residential land and its efficiency and tapping into the potential of land consolidation can offer the protection of agricultural land and the integration of urban and rural areas in the new era. Full article
11 pages, 271 KiB  
Article
Chemical Composition and Elements Concentration of Fillet, Spine and Bones of Common Carp (Cyprinus carpio) in Relation to Nutrient Requirements for Minerals
by Agnieszka Kaliniak-Dziura, Piotr Skałecki, Mariusz Florek, Monika Kędzierska-Matysek and Paweł Sobczak
Animals 2024, 14(9), 1311; https://doi.org/10.3390/ani14091311 (registering DOI) - 27 Apr 2024
Abstract
The aim of the study was to compare the content of major components, selected elements and heavy metals in the fillet, spine and bones of a carp (Cyprinus carpio). Moreover, the extent to which a prepared portion of carp tissue (100 [...] Read more.
The aim of the study was to compare the content of major components, selected elements and heavy metals in the fillet, spine and bones of a carp (Cyprinus carpio). Moreover, the extent to which a prepared portion of carp tissue (100 g of fillet and 10 g of carp spine or bones) met the requirements for analyzed elements in adults (women and men) and children was calculated. The proximate composition (total protein, total lipid, ash, moisture) and mineral content of the fish samples were determined. The nutrient composition presented fluctuations among the different tissues. Moisture was the main constituent in the fillet and in the spine with 77.8% and 56.0%, respectively, whereas in bones, the main ingredient was ash (36.2%). All carp tissues were good sources of protein, with 16.5%, 21.0% and 17.0% in spine, bones and fillet, respectively. The most abundant main elements were the potassium in the fillet (4005 mg kg−1) and calcium in the bones (116,463 mg kg−1). The most abundant trace elements were iron in fillet and zinc in bones and spine. Carp meat can be considered a safe foodstuff in terms of concentrations of Hg, Pb and Cd, as the levels of these contaminants were less than FAO and European Commission maximum guidelines. Full article
(This article belongs to the Section Animal Nutrition)
24 pages, 49122 KiB  
Article
Integrated Remote Sensing for Geological and Mineralogical Mapping of Pb-Zn Deposits: A Case Study of Jbel Bou Dahar Region Using Multi-Sensor Imagery
by Marouane Chniouar, Amina Wafik, Youssef Daafi and Daniela Guglietta
Mining 2024, 4(2), 302-325; https://doi.org/10.3390/mining4020018 (registering DOI) - 27 Apr 2024
Abstract
This research applies remote sensing methodologies for the first time to comprehensively explore the geological and mineralogical characteristics of the Jbel Bou Dahar region. An integrated approach with multi-sensor satellite images, including ASTER, Landsat-8, and Sentinel-2 was applied with the aim to discriminate [...] Read more.
This research applies remote sensing methodologies for the first time to comprehensively explore the geological and mineralogical characteristics of the Jbel Bou Dahar region. An integrated approach with multi-sensor satellite images, including ASTER, Landsat-8, and Sentinel-2 was applied with the aim to discriminate the different lithological units in the study area. We implemented a suite of well-established image processing techniques, including Band Ratios, Principal Component Analysis, and Spectral Angle Mapper, to successfully identify, classify, and map the spatial distribution of carbonate minerals, OH-bearing minerals, and iron oxide minerals. Due to its high spectral resolution in the short-wave infrared region (SWIR), the ASTER sensor provided the most accurate results for mapping carbonate and OH-bearing minerals compared to the Sentinel-2 and Landsat-8 sensors. Conversely, Sentinel-2 offers high spectral and spatial resolution in visible and near-infrared (VNIR) corresponding to the regions where iron oxide minerals exhibit their characteristic absorption peaks. The results confirm the advantages of remote sensing technologies in the geological and mineralogical exploration of the study area and the importance of selecting the appropriate sensors for specific mapping objectives. Full article
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9 pages, 1055 KiB  
Communication
Advancing Evidence Generation for Circulating Tumor DNA: Lessons Learned from A Multi-Assay Study of Baseline Circulating Tumor DNA Levels across Cancer Types and Stages
by Brittany A. McKelvey, Hillary S. Andrews, Frederick L. Baehner, James Chen, Carin R. Espenschied, David Fabrizio, Vanessa Gorton, Claire Gould, Justin Guinney, Greg Jones, Xiangyang Lv, Michael S. Nahorski, Melanie R. Palomares, Gary A. Pestano, Mark Sausen, Alain Silk, Nicole Zhang, Zhihong Zhang, Mark D. Stewart and Jeff D. Allen
Diagnostics 2024, 14(9), 912; https://doi.org/10.3390/diagnostics14090912 (registering DOI) - 27 Apr 2024
Abstract
Circulating tumor DNA (ctDNA) holds promise as a biomarker for predicting clinical responses to therapy in solid tumors, and multiple ctDNA assays are in development. However, the heterogeneity in ctDNA levels prior to treatment (baseline) across different cancer types and stages and across [...] Read more.
Circulating tumor DNA (ctDNA) holds promise as a biomarker for predicting clinical responses to therapy in solid tumors, and multiple ctDNA assays are in development. However, the heterogeneity in ctDNA levels prior to treatment (baseline) across different cancer types and stages and across ctDNA assays has not been widely studied. Friends of Cancer Research formed a collaboration across multiple commercial ctDNA assay developers to assess baseline ctDNA levels across five cancer types in early- and late-stage disease. This retrospective study included eight commercial ctDNA assay developers providing summary-level de-identified data for patients with non-small cell lung cancer (NSCLC), bladder, breast, prostate, and head and neck squamous cell carcinoma following a common analysis protocol. Baseline ctDNA levels across late-stage cancer types were similarly detected, highlighting the potential use of ctDNA as a biomarker in these cancer types. Variability was observed in ctDNA levels across assays in early-stage NSCLC, indicative of the contribution of assay analytical performance and methodology on variability. We identified key data elements, including assay characteristics and clinicopathological metadata, that need to be standardized for future meta-analyses across multiple assays. This work facilitates evidence generation opportunities to support the use of ctDNA as a biomarker for clinical response. Full article
(This article belongs to the Special Issue Emerging Biomarkers of Clinical Diagnosis)
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15 pages, 1335 KiB  
Article
Embedding Secret Data in a Vector Quantization Codebook Using a Novel Thresholding Scheme
by Yijie Lin, Jui-Chuan Liu, Ching-Chun Chang and Chin-Chen Chang
Mathematics 2024, 12(9), 1332; https://doi.org/10.3390/math12091332 (registering DOI) - 27 Apr 2024
Abstract
In recent decades, information security has become increasingly valued, including many aspects of privacy protection, copyright protection, and digital forensics. Therefore, many data hiding schemes have been proposed and applied to various carriers such as text, images, audio, and videos. Vector Quantization (VQ) [...] Read more.
In recent decades, information security has become increasingly valued, including many aspects of privacy protection, copyright protection, and digital forensics. Therefore, many data hiding schemes have been proposed and applied to various carriers such as text, images, audio, and videos. Vector Quantization (VQ) compression is a well-known method for compressing images. In previous research, most methods related to VQ compressed images have focused on hiding information in index tables, while only a few of the latest studies have explored embedding data in codebooks. We propose a data hiding scheme for VQ codebooks. With our approach, a sender XORs most of the pixel values in a codebook and then applies a threshold to control data embedding. The auxiliary information generated during this process is embedded alongside secret data in the index reordering phase. Upon receiving the stego codebook and the reordered index table, the recipient can extract the data and reconstruct the VQ-compressed image using the reverse process. Experimental results demonstrate that our scheme significantly improves embedding capacity compared to the most recent codebook-based methods. Specifically, we observe an improvement rate of 223.66% in a small codebook of size 64 and an improvement rate of 85.19% in a codebook of size 1024. Full article
24 pages, 1506 KiB  
Article
Study on the Mechanism of Exogenous 5-Aminolevulinic Acid (ALA) in Regulating the Photosynthetic Efficiency of Pear Leaves
by Xinqing Wang, Jianting Zhang and Liangju Wang
Forests 2024, 15(5), 769; https://doi.org/10.3390/f15050769 (registering DOI) - 27 Apr 2024
Abstract
To provide a theoretical basis for the application of ALA in pear production, the effects of exogenous 5-aminolevulinic acid (ALA) treatment on leaf photosynthetic gas exchange parameters, chlorophyll fast fluorescence properties, and relative expression of the related genes were investigated using pear ( [...] Read more.
To provide a theoretical basis for the application of ALA in pear production, the effects of exogenous 5-aminolevulinic acid (ALA) treatment on leaf photosynthetic gas exchange parameters, chlorophyll fast fluorescence properties, and relative expression of the related genes were investigated using pear (Pyrus pyrifolia Nakai cv. ‘Whasan’) as a material in the study. The results show that exogenous ALA treatment improved the photosynthetic gas exchange parameters of pear leaves, upregulated the expression of multiple key genes which are related to ALA biosynthesis, metabolism, and transformation into chlorophylls. GUS staining in tobacco leaves showed that exogenous ALA activated the promoter activity of PypHEMA and PypCHLH genes, implying that the synthesis of endogenous ALA and chlorophylls was promoted by exogenous ALA. Furthermore, ALA promoted the expression of the genes encoding photosystem II (PSII) reaction center proteins, such as core protein D1, inner light-harvesting pigment proteins CP43 and CP47, and cytochrome b559. This led to increased PSII reaction center activity. In addition, ALA alleviated the donor side oxygen-evolving complex inhibition and reduced the closure rate on the receptor side, allowing for increased photochemical electron transfer and reduced heat dissipation while improving the photosynthetic performance index PIabs and PItotal. The findings of this study contribute to a better understanding of ALA’s promotion of plant photosynthetic efficiency, providing valuable insights for further research and potential applications in pear production. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
11 pages, 3923 KiB  
Article
Identification of Some Gem-Quality Red and Green Feldspars
by Zhongyi Shang, Zhiqing Zhang and Qingchao Zhou
Crystals 2024, 14(5), 409; https://doi.org/10.3390/cryst14050409 (registering DOI) - 27 Apr 2024
Abstract
Sunstone is a member of the feldspar group. Natural sunstones from Oregon exhibit unique optical effects and hold significant market value. However, since 2008, there has been a persistent issue of diffused red feldspars masquerading as natural sunstones in the market, severely undermining [...] Read more.
Sunstone is a member of the feldspar group. Natural sunstones from Oregon exhibit unique optical effects and hold significant market value. However, since 2008, there has been a persistent issue of diffused red feldspars masquerading as natural sunstones in the market, severely undermining consumer confidence in purchasing natural sunstones. Fluorescence characteristics under 305–335 nm ultraviolet excitation are considered an effective method for distinguishing copper-diffused red feldspars from natural sunstones. In this paper, through detailed analysis and testing of ten market-acquired red and green feldspar samples, including UV-vis spectra, microscopic characteristics, fluorescence spectra, and chemical compositions, we validate the efficacy of fluorescence characteristics in identifying copper-diffused feldspars. The results verify the widespread prevalence of copper diffusion treatment in market-acquired red and green feldspars, shedding light on their treatment history and providing valuable insights for jewelry consumers. This research not only enhances our understanding of sunstone treatments but also strengthens the reliability and applicability of fluorescence spectroscopy in gemstone identification, offering promising prospects for its broader adoption in the jewelry market. Full article
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14 pages, 3657 KiB  
Article
Phytophthora sojae Effector PsAvh113 Targets Transcription Factors in Nicotiana benthamiana
by Shuai Wu, Jinxia Shi, Qi Zheng, Yuqin Ma, Wenjun Zhou, Chengjie Mao, Chengjie Chen, Zhengwu Fang, Rui Xia and Yongli Qiao
J. Fungi 2024, 10(5), 318; https://doi.org/10.3390/jof10050318 (registering DOI) - 27 Apr 2024
Abstract
Phytophthora sojae is a type of pathogenic oomycete that causes Phytophthora root stem rot (PRSR), which can seriously affect the soybean yield and quality. To subvert immunity, P. sojae secretes a large quantity of effectors. However, the molecular mechanisms regulated by most P. [...] Read more.
Phytophthora sojae is a type of pathogenic oomycete that causes Phytophthora root stem rot (PRSR), which can seriously affect the soybean yield and quality. To subvert immunity, P. sojae secretes a large quantity of effectors. However, the molecular mechanisms regulated by most P. sojae effectors, and their host targets remain unexplored. Previous studies have shown that the expression of PsAvh113, an effector secreted by Phytophthora sojae, enhances viral RNA accumulations and symptoms in Nicotiana benthamiana via VIVE assay. In this study, we analyzed RNA-sequencing data based on disease symptoms in N. benthamiana leaves that were either mocked or infiltrated with PVX carrying the empty vector (EV) and PsAvh113. We identified 1769 differentially expressed genes (DEGs) dependent on PsAvh113. Using stricter criteria screening and Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) analysis of DEGs, we found that 38 genes were closely enriched in response to PsAvh113 expression. We selected three genes of N. benthamiana (NbNAC86, NbMyb4, and NbERF114) and found their transcriptional levels significantly upregulated in N. benthamiana infected with PVX carrying PsAvh113. Furthermore, individual silencing of these three genes promoted P. capsici infection, while their overexpression increased resistance to P. capsici in N. benthamiana. Our results show that PsAvh113 interacts with transcription factors NbMyb4 and NbERF114 in vivo. Collectively, these data may help us understand the pathogenic mechanism of effectors and manage PRSR in soybeans. Full article
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29 pages, 7414 KiB  
Article
Analysis of the Surrounding Rock Full-Displacement Variation in Large-Span Mudstone Highway Tunnels
by Dechao Chi, Yanbin Luo, Chengwei Chen, Shengqing Wang, Yunfei Wu and Yuhang Hu
Symmetry 2024, 16(5), 526; https://doi.org/10.3390/sym16050526 (registering DOI) - 27 Apr 2024
Abstract
Due to the increasing development of highway reconstruction and expansion projects in China, many large-span highway tunnels are being constructed near existing highway tunnels. Tunneling underneath will inevitably cause variation in the surrounding rock displacement and may even lead to collapse. In this [...] Read more.
Due to the increasing development of highway reconstruction and expansion projects in China, many large-span highway tunnels are being constructed near existing highway tunnels. Tunneling underneath will inevitably cause variation in the surrounding rock displacement and may even lead to collapse. In this study, based on an analysis of extensive field monitoring data from the Gucheng tunnel, the variation law for the surrounding rock full-displacement and the influence of the tunnel-face spatial effect in a large-span mudstone tunnel are analyzed. The change in the full displacement experienced the following sequence: slow pre-displacement growth → rapid increase → slow increase → gradual stability. The displacement released by the excavation of the tunnel construction accounts for 40~60% of the total displacement, and the closer to the excavation contour, the more obvious the displacement release. The final convergence value of vertical displacement is obtained by hyperbolic function regression prediction analysis. Based on this value, Lee and Hoek equations are used for parameter analysis and field-data fitting. It is concluded that the larger the proportion of the early displacement of the surrounding rock before construction to the total displacement, the smaller the influence of the tunnel-face spatial effect on the surrounding rock. The numerical simulation results are compared with actual monitoring results, and good agreement is observed. The larger the burial depth of the tunnel, the smaller the influence range in the tunnel-face spatial effect, and the more concentrated the displacement release. The variation law and the influential range for the surrounding rock full-displacement described in this paper can provide a reference for predicting and controlling the deformation during the construction of future large-span mudstone tunnels. Full article
(This article belongs to the Section Engineering and Materials)
24 pages, 1060 KiB  
Article
Studies on the Thermal Decomposition Course of Nitrogen-Rich Heterocyclic Esters as Potential Drug Candidates and Evaluation of Their Thermal Stability and Properties
by Marta Worzakowska, Krzysztof Sztanke and Małgorzata Sztanke
Int. J. Mol. Sci. 2024, 25(9), 4768; https://doi.org/10.3390/ijms25094768 (registering DOI) - 27 Apr 2024
Abstract
Drug candidates must undergo thermal evaluation as early as possible in the preclinical phase of drug development because undesirable changes in their structure and physicochemical properties may result in decreased pharmacological activity or enhanced toxicity. Hence, the detailed evaluation of nitrogen-rich heterocyclic esters [...] Read more.
Drug candidates must undergo thermal evaluation as early as possible in the preclinical phase of drug development because undesirable changes in their structure and physicochemical properties may result in decreased pharmacological activity or enhanced toxicity. Hence, the detailed evaluation of nitrogen-rich heterocyclic esters as potential drug candidates, i.e., imidazolidinoannelated triazinylformic acid ethyl esters 13 (where R1 = 4–CH3 or 4–OCH3 or 4–Cl, and R2 = –COOC2H5) and imidazolidinoannelated triazinylacetic acid methyl esters 46 (where R1 = 4–CH3 or 4–OCH3 or 4–Cl, and R2 = –CH2COOCH3)—in terms of their melting points, melting enthalpy values, thermal stabilities, pyrolysis, and oxidative decomposition course—has been carried out, using the simultaneous thermal analysis methods (TG/DTG/DSC) coupled with spectroscopic techniques (FTIR and QMS). It was found that the melting process (documented as one sharp peak related to the solid–liquid phase transition) of the investigated esters proceeded without their thermal decomposition. It was confirmed that the melting points of the tested compounds increased in relation to R1 and R2 as follows: 2 (R1 = 4–OCH3; R2 = –COOC2H5) < 6 (R1 = 4–Cl; R2 = –CH2COOCH3) < 5 (R1 = 4–OCH3; R2 = –CH2COOCH3) < 3 (R1 = 4–Cl; R2 = –COOC2H5) < 1 (R1 = 4–CH3; R2 = –COOC2H5) < 4 (R1 = 4–CH3; R2 = –CH2COOCH3). All polynitrogenated heterocyclic esters proved to be thermally stable up to 250 °C in inert and oxidising conditions, although 13 were characterised by higher thermal stability compared to 46. The results confirmed that both the pyrolysis and the oxidative decomposition of heterocyclic ethyl formates/methyl acetates with para-substitutions at the phenyl moiety proceed according to the radical mechanism. In inert conditions, the pyrolysis process of the studied molecules occurred with the homolytic breaking of the C–C, C–N, and C–O bonds. This led to the emission of alcohol (ethanol in the case of 13 or methanol in the case of 46), NH3, HCN, HNCO, aldehydes, CO2, CH4, HCl, aromatics, and H2O. In turn, in the presence of air, cleavage of the C–C, C–N, and C–O bonds connected with some oxidation and combustion processes took place. This led to the emission of the corresponding alcohol depending on the analysed class of heterocyclic esters, NH3, HCN, HNCO, aldehydes, N2, NO/NO2, CO, CO2, HCl, aromatics, and H2O. Additionally, after some biological tests, it was proven that all nitrogen-rich heterocyclic esters—as potential drug candidates—are safe for erythrocytes, and some of them are able to protect red blood cells from oxidative stress-induced damage. Full article
(This article belongs to the Special Issue Techniques and Strategies in Drug Design and Discovery, 2nd Edition)
18 pages, 2004 KiB  
Article
Harnessing Metabolites as Serum Biomarkers for Liver Graft Pathology Prediction Using Machine Learning
by Cristina Baciu, Soumita Ghosh, Sara Naimimohasses, Arya Rahmani, Elisa Pasini, Maryam Naghibzadeh, Amirhossein Azhie and Mamatha Bhat
Metabolites 2024, 14(5), 254; https://doi.org/10.3390/metabo14050254 (registering DOI) - 27 Apr 2024
Abstract
Graft injury affects over 50% of liver transplant (LT) recipients, but non-invasive biomarkers to diagnose and guide treatment are currently limited. We aimed to develop a biomarker of graft injury by integrating serum metabolomic profiles with clinical variables. Serum from 55 LT recipients [...] Read more.
Graft injury affects over 50% of liver transplant (LT) recipients, but non-invasive biomarkers to diagnose and guide treatment are currently limited. We aimed to develop a biomarker of graft injury by integrating serum metabolomic profiles with clinical variables. Serum from 55 LT recipients with biopsy confirmed metabolic dysfunction-associated steatohepatitis (MASH), T-cell mediated rejection (TCMR) and biliary complications was collected and processed using a combination of LC-MS/MS assay. The metabolomic profiles were integrated with clinical information using a multi-class Machine Learning (ML) classifier. The model’s efficacy was assessed through the Out-of-Bag (OOB) error estimate evaluation. Our ML model yielded an overall accuracy of 79.66% with an OOB estimate of the error rate at 19.75%. The model exhibited a maximum ability to distinguish MASH, with an OOB error estimate of 7.4% compared to 22.2% for biliary and 29.6% for TCMR. The metabolites serine and serotonin emerged as the topmost predictors. When predicting binary outcomes using three models: Biliary (biliary vs. rest), MASH (MASH vs. rest) and TCMR (TCMR vs. rest); the AUCs were 0.882, 0.972 and 0.896, respectively. Our ML tool integrating serum metabolites with clinical variables shows promise as a non-invasive, multi-class serum biomarker of graft pathology. Full article
(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
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14 pages, 522 KiB  
Article
Training Methods Used by Dog Guardians in the United States: Prevalence, Sources of Information, and Reasons for Use
by Anamarie C. Johnson and Clive D. L. Wynne
Animals 2024, 14(9), 1310; https://doi.org/10.3390/ani14091310 (registering DOI) - 27 Apr 2024
Abstract
While there has been recent attention in the scientific community on the ethical and welfare implications of different dog training methods, less research has investigated what methods and training tools United States dog guardians use, where they obtain information about dog training, and [...] Read more.
While there has been recent attention in the scientific community on the ethical and welfare implications of different dog training methods, less research has investigated what methods and training tools United States dog guardians use, where they obtain information about dog training, and the reasons they give for their choices of method. We conducted two surveys with nearly 800 Arizona State University undergraduate students to gain a more realistic look into how dog guardians in the United States train their dogs and where they are receiving their training information. Only 5% of respondents reported utilizing a trainer when they had concerns regarding their dog’s behavior; 60% would ask a friend or family member or seek advice online. Few reported taking their dog to any training classes; 70% reported either training the dog themselves or not implementing any formal training. When asked general questions, most respondents reported using rewards-based methods but, when asked about specific problem behaviors, 57% of respondents noted that they would use auditory or physical corrections. Respondents who trained with rewards-based methods reported that these methods of training were more effective significantly more frequently than those who trained with mixed methods reported that those methods were most effective (Fisher’s Exact Test, p < 0.01). Full article
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27 pages, 629 KiB  
Review
Implementing Trauma-Informed Care—Settings, Definitions, Interventions, Measures, and Implementation across Settings: A Scoping Review
by Lene Lauge Berring, Tine Holm, Jens Peter Hansen, Christian Lie Delcomyn, Rikke Søndergaard and Jacob Hvidhjelm
Healthcare 2024, 12(9), 908; https://doi.org/10.3390/healthcare12090908 (registering DOI) - 27 Apr 2024
Abstract
Traumatic experiences can have long-lasting negative effects on individuals, organizations, and societies. If trauma is not addressed, it can create unsafe cultures with constant arousal, untrusting relationships, and the use of coercive measures. Trauma-informed care (TIC) can play a central role in mitigating [...] Read more.
Traumatic experiences can have long-lasting negative effects on individuals, organizations, and societies. If trauma is not addressed, it can create unsafe cultures with constant arousal, untrusting relationships, and the use of coercive measures. Trauma-informed care (TIC) can play a central role in mitigating these negative consequences, but it is unknown how and in which way(s) TIC should be implemented. Our objective was to conduct a scoping review that systematically explored and mapped research conducted in this area and to identify existing knowledge about the implementation of TIC. The search was conducted on the CINAHL, Cochrane, Embase, ERIC, Medline, PsycINFO, and Web of Science databases, and more than 3000 empirical papers, published between 2000 and 2022, were identified. Following further screening, we included 157 papers in our review, which were mainly from the USA, Australia, New Zealand, and Canada, focusing on study settings, methodologies, and definitions of TIC, as well as the types of interventions and measures used. This review shows that TIC is a complex and multifaceted framework, with no overarching structure or clear theoretical underpinnings that can guide practical implementations. TIC has been defined and adapted in varied ways across different settings and populations, making it difficult to synthesize knowledge. A higher level of agreement on how to operationalize and implement TIC in international research could be important in order to better examine its impact and broaden the approach. Full article
(This article belongs to the Topic Global Mental Health Trends)
17 pages, 6688 KiB  
Article
Wideband Millimeter-Wave Perforated Hemispherical Dielectric Resonator Antenna
by Waled Albakosh, Rawad Asfour, Yas Khalil and Salam K. Khamas
Electronics 2024, 13(9), 1694; https://doi.org/10.3390/electronics13091694 (registering DOI) - 27 Apr 2024
Abstract
This paper presents a novel wideband circularly polarized millimeter-wave (mmWave) hemispherical dielectric resonator antenna (HDRA). Two distinct configurations of alumina dielectric resonator antennas (DRAs) are investigated, each featuring a different coating: the first configuration incorporates a polyimide layer, while the second involves a [...] Read more.
This paper presents a novel wideband circularly polarized millimeter-wave (mmWave) hemispherical dielectric resonator antenna (HDRA). Two distinct configurations of alumina dielectric resonator antennas (DRAs) are investigated, each featuring a different coating: the first configuration incorporates a polyimide layer, while the second involves a perforated alumina. Both configurations demonstrate promising characteristics, including impedance and axial ratio (AR) bandwidths of 58% and 17.7%, respectively, alongside a maximum gain of 10 dBic at 28 GHz. Leveraging additive manufacturing technology, the HDRA with the perforated coating layer is fabricated, simplifying assembly and eliminating potential air gaps between layers, thereby enhancing the overall performance. This innovative approach yields a circularly polarized (CP) HDRA suitable for Beyond 5G (B5G) communication systems. Agreement between measurements and simulations validates the efficacy of the proposed design, affirming its potential in practical applications. Full article
(This article belongs to the Special Issue Smart Communication and Networking in the 6G Era)
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20 pages, 5948 KiB  
Article
Temperature Structure Inversion of Mesoscale Eddies in the South China Sea Based on Deep Learning
by Jidong Huo, Jungang Yang, Liting Geng, Guangliang Liu, Jie Zhang, Jichao Wang and Wei Cui
J. Mar. Sci. Eng. 2024, 12(5), 723; https://doi.org/10.3390/jmse12050723 (registering DOI) - 27 Apr 2024
Abstract
Mesoscale eddies are common in global oceans, playing crucial roles in ocean dynamics, ocean circulation, and heat transport, and their vertical structures can affect the water layers from tens to thousands of meters. In this study, we integrated sea surface height and sea [...] Read more.
Mesoscale eddies are common in global oceans, playing crucial roles in ocean dynamics, ocean circulation, and heat transport, and their vertical structures can affect the water layers from tens to thousands of meters. In this study, we integrated sea surface height and sea surface temperature data into deep learning methods to study the mesoscale eddy subsurface temperature structure and to explore the relationship between sea surface data and eddy subsurface layers. In this study, we introduce Dual_EddyNet, a deep learning algorithm designed to invert the subsurface temperature structure of mesoscale eddies. Using this algorithm, we explore the impact of the sea surface height and sea surface temperature on the subsurface temperature structure inversion of mesoscale eddies. Furthermore, we compare different data fusion strategies, namely single-stream neural networks and dual-stream neural networks, to validate the effectiveness of the dual-stream model. To capture the interrelations among surface data and integrate feature information across various dimensions, we introduce the Triplet Attention Mechanism. The experimental results demonstrate that the proposed Dual_EddyNet performs well in reconstructing the three-dimensional structure of mesoscale eddies in the South China Sea (within a depth of 1000 m), with an inversion accuracy of 91.44% for cyclonic eddies and 95.25% for anticyclonic eddies. This algorithm provides a new method for inverting the subsurface temperatures of mesoscale eddies, and can not only be directly deployed in systems, embedded in ship moving platforms, etc., but can also provide a data reference for assimilations and numerical simulations, demonstrating its rich application potential. Full article
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15 pages, 4593 KiB  
Article
Intra-Examiner Reliability and Validity of Sagittal Cervical Spine Mensuration Methods Using Deep Convolutional Neural Networks
by Mohammad Mehdi Hosseini, Mohammad H. Mahoor, Jason W. Haas, Joseph R. Ferrantelli, Anne-Lise Dupuis, Jason O. Jaeger and Deed E. Harrison
J. Clin. Med. 2024, 13(9), 2573; https://doi.org/10.3390/jcm13092573 (registering DOI) - 27 Apr 2024
Abstract
Background: The biomechanical analysis of spine and postural misalignments is important for surgical and non-surgical treatment of spinal pain. We investigated the examiner reliability of sagittal cervical alignment variables compared to the reliability and concurrent validity of computer vision algorithms used in the [...] Read more.
Background: The biomechanical analysis of spine and postural misalignments is important for surgical and non-surgical treatment of spinal pain. We investigated the examiner reliability of sagittal cervical alignment variables compared to the reliability and concurrent validity of computer vision algorithms used in the PostureRay® software 2024. Methods: A retrospective database of 254 lateral cervical radiographs of patients between the ages of 11 and 86 is studied. The radiographs include clearly visualized C1–C7 vertebrae that were evaluated by a human using the software. To evaluate examiner reliability and the concurrent validity of the trained CNN performance, two blinded trials of radiographic digitization were performed by an extensively trained expert user (US) clinician with a two-week interval between trials. Then, the same clinician used the trained CNN twice to reproduce the same measures within a 2-week interval on the same 254 radiographs. Measured variables included segmental angles as relative rotation angles (RRA) C1–C7, Cobb angles C2–C7, relative segmental translations (RT) C1–C7, anterior translation C2–C7, and absolute rotation angle (ARA) C2–C7. Data were remotely extracted from the examiner’s PostureRay® system for data collection and sorted based on gender and stratification of degenerative changes. Reliability was assessed via intra-class correlations (ICC), root mean squared error (RMSE), and R2 values. Results: In comparing repeated measures of the CNN network to itself, perfect reliability was found for the ICC (1.0), RMSE (0), and R2 (1). The reliability of the trained expert US was in the excellent range for all variables, where 12/18 variables had ICCs ≥ 0.9 and 6/18 variables were 0.84 ≤ ICCs ≤ 0.89. Similarly, for the expert US, all R2 values were in the excellent range (R2 ≥ 0.7), and all RMSEs were small, being 0.42 ≤ RMSEs ≤ 3.27. Construct validity between the expert US and the CNN network was found to be in the excellent range with 18/18 ICCs in the excellent range (ICCs ≥ 0.8), 16/18 R2 values in the strong to excellent range (R2 ≥ 0.7), and 2/18 in the good to moderate range (R2 RT C6/C7 = 0.57 and R2 Cobb C6/C7 = 0.64. The RMSEs for expert US vs. the CNN network were small, being 0.37 ≤ RMSEs ≤ 2.89. Conclusions: A comparison of repeated measures within the computer vision CNN network and expert human found exceptional reliability and excellent construct validity when comparing the computer vision to the human observer. Full article
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30 pages, 3358 KiB  
Review
Advancements and Challenges in Non-Invasive Sensor Technologies for Swallowing Assessment: A Review
by Yuwen Wu, Kai Guo, Yuyi Chu, Zhisen Wang, Hongbo Yang and Juzhong Zhang
Bioengineering 2024, 11(5), 430; https://doi.org/10.3390/bioengineering11050430 (registering DOI) - 27 Apr 2024
Abstract
Dysphagia is a pervasive health issue that impacts diverse demographic groups worldwide, particularly the elderly, stroke survivors, and those suffering from neurological disorders. This condition poses substantial health risks, including malnutrition, respiratory complications, and increased mortality. Additionally, it exacerbates economic burdens by extending [...] Read more.
Dysphagia is a pervasive health issue that impacts diverse demographic groups worldwide, particularly the elderly, stroke survivors, and those suffering from neurological disorders. This condition poses substantial health risks, including malnutrition, respiratory complications, and increased mortality. Additionally, it exacerbates economic burdens by extending hospital stays and escalating healthcare costs. Given that this disorder is frequently underestimated in vulnerable populations, there is an urgent need for enhanced diagnostic and therapeutic strategies. Traditional diagnostic tools such as the videofluoroscopic swallowing study (VFSS) and flexible endoscopic evaluation of swallowing (FEES) require interpretation by clinical experts and may lead to complications. In contrast, non-invasive sensors offer a more comfortable and convenient approach for assessing swallowing function. This review systematically examines recent advancements in non-invasive swallowing function detection devices, focusing on the validation of the device designs and their implementation in clinical practice. Moreover, this review discusses the swallowing process and the associated biomechanics, providing a theoretical foundation for the technologies discussed. It is hoped that this comprehensive overview will facilitate a paradigm shift in swallowing assessments, steering the development of technologies towards more accessible and accurate diagnostic tools, thereby improving patient care and treatment outcomes. Full article
(This article belongs to the Special Issue Intelligent Health Management, Nursing and Rehabilitation Technology)
12 pages, 2325 KiB  
Article
Concept Drift Mitigation in Low-Cost Air Quality Monitoring Networks
by Gerardo D’Elia, Matteo Ferro, Paolo Sommella, Sergio Ferlito, Saverio De Vito and Girolamo Di Francia
Sensors 2024, 24(9), 2786; https://doi.org/10.3390/s24092786 (registering DOI) - 27 Apr 2024
Abstract
Future air quality monitoring networks will integrate fleets of low-cost gas and particulate matter sensors that are calibrated using machine learning techniques. Unfortunately, it is well known that concept drift is one of the primary causes of data quality loss in machine learning [...] Read more.
Future air quality monitoring networks will integrate fleets of low-cost gas and particulate matter sensors that are calibrated using machine learning techniques. Unfortunately, it is well known that concept drift is one of the primary causes of data quality loss in machine learning application operational scenarios. The present study focuses on addressing the calibration model update of low-cost NO2 sensors once they are triggered by a concept drift detector. It also defines which data are the most appropriate to use in the model updating process to gain compliance with the relative expanded uncertainty (REU) limits established by the European Directive. As the examined methodologies, the general/global and the importance weighting calibration models were applied for concept drift effects mitigation. Overall, for all the devices under test, the experimental results show the inadequacy of both models when performed independently. On the other hand, the results from the application of both models through a stacking ensemble strategy were able to extend the temporal validity of the used calibration model by three weeks at least for all the sensor devices under test. Thus, the usefulness of the whole information content gathered throughout the original co-location process was maximized. Full article
(This article belongs to the Special Issue Eurosensors 2023 Selected Papers)
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