The 2023 MDPI Annual Report has
been released!
 
13 pages, 2708 KiB  
Article
Analyzing the Effects of Age, Time of Day, and Experiment on the Basal Locomotor Activity and Light-Off Visual Motor Response Assays in Zebrafish Larvae
by Niki Tagkalidou, Cristiana Roberta Multisanti, Maria Jose Bleda, Juliette Bedrossiantz, Eva Prats, Caterina Faggio, Carlos Barata and Demetrio Raldúa
Toxics 2024, 12(5), 349; https://doi.org/10.3390/toxics12050349 (registering DOI) - 9 May 2024
Abstract
The recent availability of commercial platforms for behavioral analyses in zebrafish larvae based on video-tracking technologies has exponentially increased the number of studies analyzing different behaviors in this model organism to assess neurotoxicity. Among the most commonly used assays in zebrafish larvae are [...] Read more.
The recent availability of commercial platforms for behavioral analyses in zebrafish larvae based on video-tracking technologies has exponentially increased the number of studies analyzing different behaviors in this model organism to assess neurotoxicity. Among the most commonly used assays in zebrafish larvae are basal locomotor activity (BLA) and visual motor responses (VMRs). However, the effect of different intrinsic and extrinsic factors that can significantly alter the outcome of these assays is still not well understood. In this work, we have analyzed the influence of age (5–8 days post-fertilization), time of day (8:00, 10:00, 12:00, 14:00; 16:00, 18:00, and 20:00 h), and experiment (three experiments performed at different days) on BLA and VMR results (4004 analyses for each behavior) in 143 larvae. The results from both behaviors were adjusted to a random-effects linear regression model using generalized least squares (GLSs), including in the model the effect of the three variables, the second-way interactions between them, and the three-way interaction. The results presented in this manuscript show a specific effect of all three intrinsic factors and their interactions on both behaviors, supporting the view that the most stable time period for performing these behavioral assays is from 10:00 am to 04:00 pm, with some differences depending on the age of the larva and the behavioral test. Full article
(This article belongs to the Section Novel Methods in Toxicology Research)
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30 pages, 8565 KiB  
Review
Marine Infrastructure Detection with Satellite Data—A Review
by Robin Spanier and Claudia Kuenzer
Remote Sens. 2024, 16(10), 1675; https://doi.org/10.3390/rs16101675 (registering DOI) - 9 May 2024
Abstract
A rapid development of marine infrastructures can be observed along the global coasts. Offshore wind farms, oil and gas platforms, artificial islands, aquaculture, and more, are being constructed without a proper quantification of these human activities. Therefore, effective monitoring is required to maintain [...] Read more.
A rapid development of marine infrastructures can be observed along the global coasts. Offshore wind farms, oil and gas platforms, artificial islands, aquaculture, and more, are being constructed without a proper quantification of these human activities. Therefore, effective monitoring is required to maintain transparency towards environmental standards, marine resource management, inventorying objects, and global security. This study reviews remote sensing-based approaches to offshore infrastructure detection over the past 12 years. We analyzed 89 studies from over 30 scientific journals, highlighting spatial and temporal trends, methodological approaches, and regional and thematic research foci. Our results show a significant increase in research interest, especially since 2019. Asia, and especially China, is the predominant focus region in terms of first authorship, funding, and areas of investigation. Aquaculture is the most studied infrastructure, followed by platforms, offshore wind farms, and artificial islands. Gaofen, Sentinel, and Landsat are the most used satellite sensors for detection. The apparent shift towards automated detection methods, especially Deep Learning algorithms, reflects advances in computer vision. This study highlights the key role of earth observation in the field of off-shore infrastructure detection, which can contribute towards outlining effective monitoring practices for marine activities, as well as highlighting important knowledge gaps. Full article
(This article belongs to the Section Ocean Remote Sensing)
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14 pages, 2234 KiB  
Brief Report
Effect of Biologger Attachment on the Stress and Health State of the Spotted Sea Bass Lateolabrax maculatus
by Sung-Yong Oh, Jun-Ho Maeng and Han-Seung Kang
J. Mar. Sci. Eng. 2024, 12(5), 793; https://doi.org/10.3390/jmse12050793 (registering DOI) - 9 May 2024
Abstract
The biologger is a widely used tool in biotelemetry for investigating marine fish. However, studies reported that the attachment of biologgers has a negative effect on the target organisms. We assessed the health status of spotted sea bass with attached biologgers by analyzing [...] Read more.
The biologger is a widely used tool in biotelemetry for investigating marine fish. However, studies reported that the attachment of biologgers has a negative effect on the target organisms. We assessed the health status of spotted sea bass with attached biologgers by analyzing changes in their serum biochemistry and biomarker gene expression at varying biologger/fish body weight ratios. Especially, the assessment of the health status using biomarker genes offers the rapid evaluation of the condition of an individual. The genes bax, hsp70-2, and Cx32.7, associated with apoptosis, stress, and immunity, were selected as biomarker genes to assess the fish stress levels and overall health. The experimental groups included a control group without the biologger (C) and biologger-equipped groups, each carrying a biologger whose weight was 2.0–3.0% (W2), 5.0–6.0% (W5), and 10.0–12.0% (W10) of the fish body weight. Blood samples were collected on days 0, 1, 7, 14, and 21 post-attachment. The expression of bax, hsp70-2, and Cx32.7 was analyzed in the liver and muscle on day 21. The W10 group showed significantly higher levels of superoxide dismutase on day 1 and of glutamic oxaloacetic transaminase and glutamic pyruvic transaminase on day 7 than the other groups. On day 21 post-attachment, regardless of the biologger/fish body weight ratio, the liver and muscle tissues from groups W2, W5, and W10 showed significantly higher expression of bax, hsp70-2, and Cx32.7 than those from group C, respectively. However, there was no significant change in blood parameters depending on the weight of the attached biologger on day 21 post-attachment. These results indicate that the spotted sea bass gradually adapted to the attached biologgers of weights up to 10–12% of their body weight under our experimental conditions, providing clues to determine the timing of biologger release for biotelemetry studies. Full article
(This article belongs to the Section Marine Biology)
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10 pages, 2058 KiB  
Brief Report
CO2 Laser Frenuloplasty: Advancing Minimally Invasive Techniques for Rapid Healing and Improved Patient Outcomes
by Simone Amato, Steven Nisticò, Luigi Bennardo, Giovanni Pellacani and Giovanni Cannarozzo
Surgeries 2024, 5(2), 367-376; https://doi.org/10.3390/surgeries5020030 (registering DOI) - 9 May 2024
Abstract
This study explores the innovative use of CO2 laser technology in frenuloplasty, a significant shift from classic methods like scalpel surgery or electrocautery towards a minimally invasive approach. The research involved 15 patients aged 25 to 50, undergoing frenuloplasty with a CO2 laser [...] Read more.
This study explores the innovative use of CO2 laser technology in frenuloplasty, a significant shift from classic methods like scalpel surgery or electrocautery towards a minimally invasive approach. The research involved 15 patients aged 25 to 50, undergoing frenuloplasty with a CO2 laser system equipped with a 7-inch defocused handpiece, set at 20 Hz and 0.3 W. This method diverges from conventional laser techniques, focusing on controlled laser passes combined with manual traction to elongate the fibrous tissue of the frenulum. The results demonstrated that the CO2 laser technique allowed for a precise and progressive modification of the frenulum, significantly reducing the risks of hemorrhage and secondary intention fibrosis. The healing process was notably expedited, with patients reporting satisfactory outcomes within a two-week period. Statistically significant improvements were observed in patient-reported outcomes, as evidenced by the increases in the Short Form Health Survey (SF-12) scores, with the mean Physical Component Summary (PCS) score rising from 32.5 to 47.5 and the mean Mental Component Summary (MCS) score from 39.3 to 52.3 (p < 0.001 for both). The study concludes that CO2 laser frenuloplasty is an effective and safe technique, offering substantial benefits in terms of reduced healing time and enhanced patient satisfaction. The significant improvements in SF-12 scores underscore the positive impact on patient quality of life, advocating for the broader application of this technique in clinical practice. Further research is warranted to explore its potential in a wider clinical context. Full article
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12 pages, 2178 KiB  
Systematic Review
How Effective Is Phage Therapy for Prosthetic Joint Infections? A Preliminary Systematic Review and Proportional Meta-Analysis of Early Outcomes
by Jason Young, Nicita Mehta, Sang Won Lee and Edward Kenneth Rodriguez
Medicina 2024, 60(5), 790; https://doi.org/10.3390/medicina60050790 (registering DOI) - 9 May 2024
Abstract
Background and Objectives: Despite the promise of phage therapy (PT), its efficacy in prosthetic joint infection (PJI) management is unknown. Much of the current literature is largely limited to case reports and series. Materials and Methods: In order to help inform power calculations [...] Read more.
Background and Objectives: Despite the promise of phage therapy (PT), its efficacy in prosthetic joint infection (PJI) management is unknown. Much of the current literature is largely limited to case reports and series. Materials and Methods: In order to help inform power calculations for future clinical trials and comparative analyses, we performed a systematic review and proportional meta-analysis of early PT outcomes to provide a preliminary assessment of early phage therapy treatment outcomes for cases of PJI. Results: In a search of available literature across MEDLINE (Ovid, Wolters Kluwer, Alphen aan den Rijn, The Netherlands), Embase (Elsevier, Amsterdam, The Netherlands), the Web of Science Core Collection (Clarivate, London, UK), and Cochrane Central (Wiley, Hoboken, NJ, USA) up to 23 September 2023, we identified 37 patients with PJIs receiving adjunctive PT. Patients most frequently reported Staphylococcal species infection (95%) and intraarticular phage delivery (73%). Phage cocktail (65%) and antibiotic co-administration (97%) were common. A random-effects proportional meta-analysis suggested infection remission in 78% of patients (95% CI: 39%, 95%) (I2 = 55%, p = 0.08) and 83% with a minimum 12-month follow-up (95% CI: 53%, 95%) (I2 = 26%, p = 0.26). Conclusions: Our study provides a preliminary estimate of PT’s efficacy in PJIs and informs future comparative studies. Full article
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16 pages, 3490 KiB  
Article
Computational Insights into the Interplay of Mechanical Forces in Angiogenesis
by Ana Guerra, Jorge Belinha, Christiane Salgado, Fernando Jorge Monteiro and Renato Natal Jorge
Biomedicines 2024, 12(5), 1045; https://doi.org/10.3390/biomedicines12051045 (registering DOI) - 9 May 2024
Abstract
This study employs a meshless computational model to investigate the impacts of compression and traction on angiogenesis, exploring their effects on vascular endothelial growth factor (VEGF) diffusion and subsequent capillary network formation. Three distinct initial domain geometries were defined to simulate variations in [...] Read more.
This study employs a meshless computational model to investigate the impacts of compression and traction on angiogenesis, exploring their effects on vascular endothelial growth factor (VEGF) diffusion and subsequent capillary network formation. Three distinct initial domain geometries were defined to simulate variations in endothelial cell sprouting and VEGF release. Compression and traction were applied, and the ensuing effects on VEGF diffusion coefficients were analysed. Compression promoted angiogenesis, increasing capillary network density. The reduction in the VEGF diffusion coefficient under compression altered VEGF concentration, impacting endothelial cell migration patterns. The findings were consistent across diverse simulation scenarios, demonstrating the robust influence of compression on angiogenesis. This computational study enhances our understanding of the intricate interplay between mechanical forces and angiogenesis. Compression emerges as an effective mediator of angiogenesis, influencing VEGF diffusion and vascular pattern. These insights may contribute to innovative therapeutic strategies for angiogenesis-related disorders, fostering tissue regeneration and addressing diseases where angiogenesis is crucial. Full article
(This article belongs to the Special Issue Angiogenesis)
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25 pages, 4241 KiB  
Systematic Review
Nanotechnology in Lubricants: A Systematic Review of the Use of Nanoparticles to Reduce the Friction Coefficient
by Milton Garcia Tobar, Rafael Wilmer Contreras Urgiles, Bryan Jimenez Cordero and Julio Guillen Matute
Lubricants 2024, 12(5), 166; https://doi.org/10.3390/lubricants12050166 (registering DOI) - 9 May 2024
Abstract
The study of lubricating oil is paramount for the optimal functioning of modern engines, and it has generated intensive research in the automotive industry. The aim is to improve the tribological properties of lubricants by including nanomaterials as additives in base oils. This [...] Read more.
The study of lubricating oil is paramount for the optimal functioning of modern engines, and it has generated intensive research in the automotive industry. The aim is to improve the tribological properties of lubricants by including nanomaterials as additives in base oils. This article presents an exhaustive bibliographic review of the experiments carried out to optimize the tribological properties of nano-lubricants in order to identify the nanoparticles and experimental processes used and analyze the results obtained. The methodology adopted combines inductive and deductive elements. It begins with the formulation of a general theory on the application of nanoparticles in lubricants, followed by the collection of specific data on the conceptualization and preparation of nano-lubricants. A total of 176 articles focused on the application of nanoparticles in lubricants, especially to reduce the coefficient of friction, are reviewed. These works, with impact levels Q1 and Q2, delve into the application and are analyzed to review the obtained results. Most researchers worked with a nanoparticle concentration range of 0% to 1% by volume. Full article
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26 pages, 14061 KiB  
Article
Implementation of a Microgrid System with a Four-Phase Inductor Coupled Interleaved Boost Converter for EV Charging Stations
by Kommoju Naga Durga Veera Sai Eswar, Mohan Arun Noyal Doss, Mohammed Alruwaili and Waleed Mohammed Abdelfattah
Energies 2024, 17(10), 2277; https://doi.org/10.3390/en17102277 (registering DOI) - 9 May 2024
Abstract
Electric vehicle charging stations are essential to enable broad reception due to the rise in electric vehicles in the transportation industry because they will lessen range anxiety concerns about distance. The primary objective of this work is to design a microgrid that is [...] Read more.
Electric vehicle charging stations are essential to enable broad reception due to the rise in electric vehicles in the transportation industry because they will lessen range anxiety concerns about distance. The primary objective of this work is to design a microgrid that is effective and affordable for an electric vehicle charging station that combines a photovoltaic, wind, and utility grid energy system (optional) as a principal source of energy. The proposed study employs a four-phase inductor coupled interleaved boost converter which is compact and effective with high power output which results in charging a vehicle within 33 min. A perturb and observe MPPT approach based on DC converters is used along with the digital 2PI controller to increase the effectiveness and performance of distributed energy systems. To make the converter a hassle-free operation, an interleaving technique is applied to the developed converter which results in ripple reduction, which results in an increase in the output current and voltage gain, with high power density and efficiency. For better understanding, real-time data for 2W/3W/4W are acquired and tested for various conditions and the maximum state of charge for the battery is gained within one-third of the usual time. At present, the interleaved converter’s operation is theoretically examined, and the behavior of the converter and the charging conditions of several electric vehicle systems are compared and shown in the simulation analysis. Full article
(This article belongs to the Special Issue Electric Vehicle Charging: Social and Technical Issues Ⅱ)
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17 pages, 2515 KiB  
Article
Exploring the Role of Self-Adaptive Feature Words in Relation Quintuple Extraction for Scientific Literature
by Yujiang Liu, Lijun Fu, Xiaojun Xia and Yonghong Zhang
Appl. Sci. 2024, 14(10), 4020; https://doi.org/10.3390/app14104020 (registering DOI) - 9 May 2024
Abstract
Extracting relation quintuple and feature words from unstructured text is a prelude to the construction of the scientific knowledge base. At present, the prior works use explicit clues between entities to study this task but ignore the use and the association of the [...] Read more.
Extracting relation quintuple and feature words from unstructured text is a prelude to the construction of the scientific knowledge base. At present, the prior works use explicit clues between entities to study this task but ignore the use and the association of the feature words. In this work, we propose a new method to generate self-adaptive feature words from the original text for every single sample. These words can add additional correlation information to the knowledge graph. We allow the model to generate a new word representation and apply it to the original sentence to judge the relation type and locate the head and tail of the relation quintuple. Compared with the previous works, the feature words increase the flexibility of relying on information and improve the explanatory ability. Extensive experiments on scientific field datasets illustrate that the self-adaptive feature words method (SAFW) is good at ferreting out the unique feature words and obtaining the core part for the quintuple. It achieves good performance on four public datasets and obtains a markable performance improvement compared with other baselines. Full article
(This article belongs to the Special Issue Machine-Learning-Based Feature Extraction and Selection)
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15 pages, 9635 KiB  
Article
Screen-Printed Metamaterial Absorber Using Fractal Metal Mesh for Optical Transparency and Flexibility
by Jinwoo Choi, Daecheon Lim and Sungjoon Lim
Fractal Fract. 2024, 8(5), 284; https://doi.org/10.3390/fractalfract8050284 (registering DOI) - 9 May 2024
Abstract
In stealth applications, there is a growing emphasis on the development of radar-absorbing structures that are efficient, flexible, and optically transparent. This study proposes a screen-printed metamaterial absorber (MMA) on polyethylene terephthalate (PET) substrates using indium tin oxide (ITO) as the grounding layer, [...] Read more.
In stealth applications, there is a growing emphasis on the development of radar-absorbing structures that are efficient, flexible, and optically transparent. This study proposes a screen-printed metamaterial absorber (MMA) on polyethylene terephthalate (PET) substrates using indium tin oxide (ITO) as the grounding layer, which achieves both optical transparency and flexibility. These materials and methods enhance the overall flexibility and transparency of MMA. To address the limited transparency caused by the silver nanoparticle ink for the top pattern, a metal mesh was incorporated to reduce the area ratio of the printed patterns, thereby enhancing transparency. By incrementing the fractal order of the structure, we optimized the operating frequency to target the X-band, which is most commonly used in radar detection. The proposed MMA demonstrates remarkable performance, with a measured absorption of 91.99% at 8.85 GHz and an average optical transmittance of 46.70% across the visible light spectrum (450 to 700 nm), indicating its potential for applications in transparent windows or drone stealth. Full article
(This article belongs to the Special Issue Advances in Fractal Antennas: Design, Modeling and Applications)
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22 pages, 4096 KiB  
Article
Natural Killer Cells Reprogram Myeloid-Derived Suppressor Cells to Induce TNF-α Release via NKG2D–Ligand Interaction after Cryo-Thermal Therapy
by Jiaqi You, Shicheng Wang, Yongxin Zhu, Zelu Zhang, Junjun Wang, Yue Lou, Yichen Yao, Yuankai Hao and Ping Liu
Int. J. Mol. Sci. 2024, 25(10), 5151; https://doi.org/10.3390/ijms25105151 (registering DOI) - 9 May 2024
Abstract
In our previous studies, a novel cryothermal therapy (CTT) was developed to induce systemic long-term anti-tumor immunity. Natural killer (NK) cells were found to play an important role in CTT-induced long-term immune-mediated tumor control at the late stage after CTT, but the underlying [...] Read more.
In our previous studies, a novel cryothermal therapy (CTT) was developed to induce systemic long-term anti-tumor immunity. Natural killer (NK) cells were found to play an important role in CTT-induced long-term immune-mediated tumor control at the late stage after CTT, but the underlying mechanism is unclear. Myeloid-derived suppressor cells (MDSCs) are immature myeloid cells that have potent immunosuppressive effects on T cells and weaken the long-term benefits of immunotherapy. Consequently, overcoming MDSC immunosuppression is essential for maintaining the long-term efficacy of immunotherapy. In this study, we revealed that NK cells considerably diminish MDSC accumulation at the late stage after CTT, boost T cell production, increase T cell activation, and promote MDSC maturation, culminating in Th1-dominant CD4+ T cell differentiation and enhancing NK and CD8+ T cell cytotoxicity. Additionally, NK cells activate ERK signaling in MDSCs through NKG2D-ligand interaction to increase the activity of tumor necrosis factor (TNF)-α converting enzyme (TACE)-cleaved membrane TNF-α. Furthermore, Increased TACE activity releases more soluble TNF-α from MDSCs to promote MDSC maturation. In our studies, we propose a novel mechanism by which NK cells can overcome MDSC-induced immunosuppression and maintain CTT-induced persistent anti-tumor immunity, providing a prospective therapeutic option to improve the performance of cancer immunotherapy. Full article
(This article belongs to the Section Molecular Immunology)
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16 pages, 4248 KiB  
Article
Molecular Composition of Humic Acids of Different Aged Fallow Lands and Soils of Different Types of Use in Northwest of Russia
by Vyacheslav Polyakov, Timur Nizamutdinov and Evgeny Abakumov
Agronomy 2024, 14(5), 996; https://doi.org/10.3390/agronomy14050996 (registering DOI) - 9 May 2024
Abstract
Post-agrogenic transformation of fallow soils leads to changes in soil carbon content, the molecular composition of humic substances, and rates of organic matter stabilization, which can affect climate change on the planet. In this regard, we analyzed the molecular composition of humic acids [...] Read more.
Post-agrogenic transformation of fallow soils leads to changes in soil carbon content, the molecular composition of humic substances, and rates of organic matter stabilization, which can affect climate change on the planet. In this regard, we analyzed the molecular composition of humic acids isolated from natural and fallow soils in the southern Taiga zone of northwest Russia. Different-aged soils on fallow lands represent a model of soil transformation in time, and data on the transformation of soil humic acid molecular composition make a significant contribution to the understanding of soil organic matter stabilization aspect issues. In this case, the molecular structure of humic acids isolated from natural and fallow soils in northwest Russia was analyzed. To study the molecular composition of HAs, the elemental composition was analyzed, and 13C (CP/MAS) NMR spectroscopy of HAs isolated from different aged abandoned soils and soils of different types of use was carried out. The obtained data showed that with the increasing age of soils in the fallow state, there is an increase in the carbon content of humic acids as well as a decrease in nitrogen content. As a result of the increasing age of soils in the fallow state, there are dynamics in the content of aromatic structural fragments in humic acids: 34% for 40 years old, 28% for 80 years old, and 31% for 120 years old. This is due to changes in the precursors of humification and the further transformation of plant residues in the soil. Re-involved fallow land soils lead to an increase in the content of aromatic structural fragments in the composition of HA in relation to HA extracted from mature soils. The lowest content of aromatic structural fragments was observed in the humic acids of 130-year-old agricultural soil, which is associated with the long-term application of organic fertilizers. Full article
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17 pages, 3397 KiB  
Article
3-Hydroxytanshinone Inhibits the Activity of Hypoxia-Inducible Factor 1-α by Interfering with the Function of α-Enolase in the Glycolytic Pathway
by Tae Hyun Son, Shin-Hye Kim, Hye-Lim Shin, Dongsoo Kim, Hwan Gyu Kim, Yongseok Choi and Sik-Won Choi
Molecules 2024, 29(10), 2218; https://doi.org/10.3390/molecules29102218 (registering DOI) - 9 May 2024
Abstract
Tumor cells in hypoxic conditions control cancer metabolism and angiogenesis by expressing HIF-1α. Tanshinone is a traditional Chinese medicine that has been shown to possess antitumor properties and exerts a therapeutic impact on angiogenesis. However, the precise molecular mechanism responsible for the antitumor [...] Read more.
Tumor cells in hypoxic conditions control cancer metabolism and angiogenesis by expressing HIF-1α. Tanshinone is a traditional Chinese medicine that has been shown to possess antitumor properties and exerts a therapeutic impact on angiogenesis. However, the precise molecular mechanism responsible for the antitumor activity of 3-Hydroxytanshinone (3-HT), a type of tanshinone, has not been fully understood. Therefore, our study aimed to investigate the mechanism by which 3-HT regulates the expression of HIF-1α. Our findings demonstrate that 3-HT inhibits HIF-1α activity and expression under hypoxic conditions. Additionally, 3-HT inhibits hypoxia-induced angiogenesis by suppressing the expression of VEGF. Moreover, 3-HT was found to directly bind to α-enolase, an enzyme associated with glycolysis, resulting in the suppression of its activity. This inhibition of α-enolase activity by 3-HT leads to the blockade of the glycolytic pathway and a decrease in glycolysis products, ultimately altering HIF1-α expression. Furthermore, 3-HT negatively regulates the expression of HIF-1α by altering the phosphorylation of AMP-activated protein kinase (AMPK). Our study’s findings elucidate the mechanism by which 3-HT regulates HIF-1α through the inhibition of the glycolytic enzyme α-enolase and the phosphorylation of AMPK. These results suggest that 3-HT holds promise as a potential therapeutic agent for hypoxia-related angiogenesis and tumorigenesis. Full article
(This article belongs to the Special Issue Natural Products in Anticancer Activity)
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27 pages, 2121 KiB  
Review
Pre- and Postharvest Strategies for Pleurotus ostreatus Mushroom in a Circular Economy Approach
by Mafalda Silva, Ana Cristina Ramos, Fernando J. Lidon, Fernando H. Reboredo and Elsa M. Gonçalves
Foods 2024, 13(10), 1464; https://doi.org/10.3390/foods13101464 (registering DOI) - 9 May 2024
Abstract
Mushroom cultivation presents a viable solution for utilizing agro-industrial byproducts as substrates for growth. This process enables the transformation of low-economic-value waste into nutritional foods. Enhancing the yield and quality of preharvest edible mushrooms, along with effectively preserving postharvest mushrooms, stands as a [...] Read more.
Mushroom cultivation presents a viable solution for utilizing agro-industrial byproducts as substrates for growth. This process enables the transformation of low-economic-value waste into nutritional foods. Enhancing the yield and quality of preharvest edible mushrooms, along with effectively preserving postharvest mushrooms, stands as a significant challenge in advancing the industry. Implementing pre- and postharvest strategies for Pleurotus ostreatus (Jacq.) P. Kumm (oyster mushroom) within a circular economy framework involves optimizing resource use, minimizing waste, and creating a sustainable and environmentally friendly production system. This review aimed to analyze the development and innovation of the different themes and trends by bibliometric analysis with a critical literature review. Furthermore, this review outlines the cultivation techniques for Pleurotus ostreatus, encompassing preharvest steps such as spawn production, substrate preparation, and the entire mushroom growth process, which includes substrate colonization, fruiting, harvesting, and, finally, the postharvest. While novel methodologies are being explored for maintaining quality and extending shelf-life, the evaluation of the environmental impact of the entire mushroom production to identify areas for improvement is needed. By integrating this knowledge, strategies can be developed for a more sustainable and circular approach to Pleurotus ostreatus mushroom cultivation, promoting environmental stewardship and long-term viability in this industry. Full article
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17 pages, 4413 KiB  
Article
Enhancing Bioactive Compound Classification through the Synergy of Fourier-Transform Infrared Spectroscopy and Advanced Machine Learning Methods
by Pedro N. Sampaio and Cecília C. R. Calado
Antibiotics 2024, 13(5), 428; https://doi.org/10.3390/antibiotics13050428 (registering DOI) - 9 May 2024
Abstract
Bacterial infections and resistance to antibiotic drugs represent the highest challenges to public health. The search for new and promising compounds with anti-bacterial activity is a very urgent matter. To promote the development of platforms enabling the discovery of compounds with anti-bacterial activity, [...] Read more.
Bacterial infections and resistance to antibiotic drugs represent the highest challenges to public health. The search for new and promising compounds with anti-bacterial activity is a very urgent matter. To promote the development of platforms enabling the discovery of compounds with anti-bacterial activity, Fourier-Transform Mid-Infrared (FT-MIR) spectroscopy coupled with machine learning algorithms was used to predict the impact of compounds extracted from Cynara cardunculus against Escherichia coli. According to the plant tissues (seeds, dry and fresh leaves, and flowers) and the solvents used (ethanol, methanol, acetone, ethyl acetate, and water), compounds with different compositions concerning the phenol content and antioxidant and antimicrobial activities were obtained. A principal component analysis of the spectra allowed us to discriminate compounds that inhibited E. coli growth according to the conventional assay. The supervised classification models enabled the prediction of the compounds’ impact on E. coli growth, showing the following values for accuracy: 94% for partial least squares-discriminant analysis; 89% for support vector machine; 72% for k-nearest neighbors; and 100% for a backpropagation network. According to the results, the integration of FT-MIR spectroscopy with machine learning presents a high potential to promote the discovery of new compounds with antibacterial activity, thereby streamlining the drug exploratory process. Full article
(This article belongs to the Special Issue Microbial Natural Products as a Source of Novel Antimicrobials)
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11 pages, 257 KiB  
Article
Diffusing Wave Microrheology in Polymeric Fluids
by George David Joseph Phillies
Polymers 2024, 16(10), 1332; https://doi.org/10.3390/polym16101332 (registering DOI) - 9 May 2024
Abstract
Recently, there has been interest in determining the viscoelastic properties of polymeric liquids and other complex fluids by means of Diffusing Wave Spectroscopy (DWS). In this technique, light-scattering spectroscopy is applied to highly turbid fluids containing optical probe particles. The DWS spectrum is [...] Read more.
Recently, there has been interest in determining the viscoelastic properties of polymeric liquids and other complex fluids by means of Diffusing Wave Spectroscopy (DWS). In this technique, light-scattering spectroscopy is applied to highly turbid fluids containing optical probe particles. The DWS spectrum is used to infer the time-dependent mean-square displacement and time-dependent diffusion coefficient D of the probes. From D, values for the storage modulus G(ω) and the loss modulus G(ω) are obtained. This paper is primarily concerned with the inference of the mean-square displacement from a DWS spectrum. However, in much of the literature, central to the inference that is said to yield D is an invocation g(1)(t)=exp(2q2X(t)2¯) of the Gaussian Approximation for the field correlation function g(1)(t) of the scattered light in terms of the mean-square displacement X(t)2¯ of a probe particle during time t. Experiment and simulation both show that the Gaussian approximation is invalid for probes in polymeric liquids and other complex fluids. In this paper, we obtain corrections to the Gaussian approximation that will assist in interpreting DWS spectra of probes in polymeric liquids. The corrections reveal that these DWS spectra receive contributions from higher moments X(t)2n¯, n>1, of the probe displacement distribution function. Full article
(This article belongs to the Section Polymer Physics and Theory)
27 pages, 1637 KiB  
Review
Non-Coding RNA as Biomarkers and Their Role in the Pathogenesis of Gastric Cancer—A Narrative Review
by Estera Bakinowska, Kajetan Kiełbowski, Patryk Skórka, Aleksandra Dach, Joanna Olejnik-Wojciechowska, Agata Szwedkowicz and Andrzej Pawlik
Int. J. Mol. Sci. 2024, 25(10), 5144; https://doi.org/10.3390/ijms25105144 (registering DOI) - 9 May 2024
Abstract
Non-coding RNAs (ncRNAs) represent a broad family of molecules that regulate gene expression, including microRNAs, long non-coding RNAs and circular RNAs, amongst others. Dysregulated expression of ncRNAs alters gene expression, which is implicated in the pathogenesis of several malignancies and inflammatory diseases. Gastric [...] Read more.
Non-coding RNAs (ncRNAs) represent a broad family of molecules that regulate gene expression, including microRNAs, long non-coding RNAs and circular RNAs, amongst others. Dysregulated expression of ncRNAs alters gene expression, which is implicated in the pathogenesis of several malignancies and inflammatory diseases. Gastric cancer is the fifth most frequently diagnosed cancer and the fourth most common cause of cancer-related death. Studies have found that altered expression of ncRNAs may contribute to tumourigenesis through regulating proliferation, apoptosis, drug resistance and metastasis. This review describes the potential use of ncRNAs as diagnostic and prognostic biomarkers. Moreover, we discuss the involvement of ncRNAs in the pathogenesis of gastric cancer, including their interactions with the members of major signalling pathways. Full article
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17 pages, 3755 KiB  
Article
Molecular Dynamics Simulations of the Mutated Proton-Transferring a-Subunit of E. coli FoF1-ATP Synthase
by Leonid A. Ivontsin, Elena V. Mashkovtseva and Yaroslav R. Nartsissov
Int. J. Mol. Sci. 2024, 25(10), 5143; https://doi.org/10.3390/ijms25105143 (registering DOI) - 9 May 2024
Abstract
The membrane Fo factor of ATP synthase is highly sensitive to mutations in the proton half-channel leading to the functional blocking of the entire protein. To identify functionally important amino acids for the proton transport, we performed molecular dynamic simulations on the [...] Read more.
The membrane Fo factor of ATP synthase is highly sensitive to mutations in the proton half-channel leading to the functional blocking of the entire protein. To identify functionally important amino acids for the proton transport, we performed molecular dynamic simulations on the selected mutants of the membrane part of the bacterial FoF1-ATP synthase embedded in a native lipid bilayer: there were nine different mutations of a-subunit residues (aE219, aH245, aN214, aQ252) in the inlet half-channel. The structure proved to be stable to these mutations, although some of them (aH245Y and aQ252L) resulted in minor conformational changes. aH245 and aN214 were crucial for proton transport as they directly facilitated H+ transfer. The substitutions with nonpolar amino acids disrupted the transfer chain and water molecules or neighboring polar side chains could not replace them effectively. aE219 and aQ252 appeared not to be determinative for proton translocation, since an alternative pathway involving a chain of water molecules could compensate the ability of H+ transmembrane movement when they were substituted. Thus, mutations of conserved polar residues significantly affected hydration levels, leading to drastic changes in the occupancy and capacity of the structural water molecule clusters (W1–W3), up to their complete disappearance and consequently to the proton transfer chain disruption. Full article
(This article belongs to the Special Issue Molecular Dynamics of Membrane Proteins)
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20 pages, 990 KiB  
Systematic Review
Assessing the Healthfulness of University Food Environments: A Systematic Review of Methods and Tools
by Alicia Anne Dahl, Stacy M. Fandetti, Lilian O. Ademu, Ryan Harris and Elizabeth F. Racine
Nutrients 2024, 16(10), 1426; https://doi.org/10.3390/nu16101426 (registering DOI) - 9 May 2024
Abstract
The availability, promotion, and price of healthy foods within the university food environment may impact students’ dietary choices. This systematic review summarizes the tools and methods used to assess the healthfulness of university food environments where many students spend a significant portion of [...] Read more.
The availability, promotion, and price of healthy foods within the university food environment may impact students’ dietary choices. This systematic review summarizes the tools and methods used to assess the healthfulness of university food environments where many students spend a significant portion of their emerging adulthood. Thirty-six global studies published between 2012 and 2022 were sourced from PubMed (NNLM), Cochrane Library (Wiley), Web of Science (Clarivate), APA PsycInfo (EBSCO), CINHAL Complete (EBSCO), ProQuest Nursing, and Allied Health, following PRISMA 2020 guidelines. Of the included studies, 58% were institutional-level audits, 17% examined individual-level perceptions, and 25% combined both. Most institutional-level audits focused on one aspect of the food environment (e.g., eateries, vending machines). For studies examining multiple spaces within the campus environment (38%), comprehensive assessments were limited, and most studies had to employ a combination of assessment tools. Surveys were most often used to gather individual perceptions about the food environment. The Nutrition Environment Measures Survey (NEMS) was the most commonly used tool across all studies. This review highlights the need for a standardized tool, method, or a “healthy” benchmark for specific use at universities to improve methodological rigor and comparability of findings across institutions. Full article
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18 pages, 3419 KiB  
Article
Transient Stability Assessment of Power Systems Based on CLV-GAN and I-ECOC
by Nan Li, Jiafei Wu, Lili Shan and Luan Yi
Energies 2024, 17(10), 2278; https://doi.org/10.3390/en17102278 (registering DOI) - 9 May 2024
Abstract
In order to improve the multi-class assessment performance of transient stability in power systems, a multi-class assessment model that combines the CLV-GAN algorithm with an improved error-correcting output coding technique is proposed in the paper. To address the issue of the small number [...] Read more.
In order to improve the multi-class assessment performance of transient stability in power systems, a multi-class assessment model that combines the CLV-GAN algorithm with an improved error-correcting output coding technique is proposed in the paper. To address the issue of the small number of unstable samples in power systems, a sample generation model is constructed by combining a dual-encoder VAE with a GAN network. The model generates effective artificial samples to balance the sample ratio between categories by learning the latent distribution of aperiodic and oscillatory unstable samples from the distribution. The decomposition method based on an improved error-correcting output coding algorithm is applied to convert the multi-class problem into a decision fusion issue for binary models. This method improves the overall performance of the multi-class model, particularly significantly increasing the recognition accuracy of discrimination against oscillatory unstable samples and reducing the safety hazards in the operation of power systems. The simulation validation was conducted on the IEEE 39-bus and IEEE 140-bus systems to confirm the effectiveness of the proposed model. Full article
(This article belongs to the Special Issue Intelligent Analysis and Control of Modern Power Systems)
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16 pages, 3886 KiB  
Article
Performance Comparison of Five Methods Available in ImageJ for Bird Counting and Detection from Video Datasets
by Kevin Adi Kurnia, Ferry Saputra, Cao Thang Luong, Marri Jmelou M. Roldan, Tai-Sheng Cheng and Chung-Der Hsiao
Inventions 2024, 9(3), 55; https://doi.org/10.3390/inventions9030055 (registering DOI) - 9 May 2024
Abstract
Bird monitoring is an important approach to studying the diversity and abundance of birds, especially during migration, as it can provide core data for bird conservation purposes. The previous methods for bird number estimation are largely based on manual counting, which suffers from [...] Read more.
Bird monitoring is an important approach to studying the diversity and abundance of birds, especially during migration, as it can provide core data for bird conservation purposes. The previous methods for bird number estimation are largely based on manual counting, which suffers from low throughput and a high error rate. In this study, we aimed to provide an alternative bird-counting method from video datasets by using five available ImageJ methods: Particle Analyzer, Find Maxima, Watershed segmentation, TrackMate, and trainable WEKA segmentation. The numbers of birds and their XY coordinates were extracted from videos to conduct a side-by-side comparison with the manual counting results, and the three important criteria of the sensitivity, precision, and F1 score were calculated for the performance evaluation. From the tests, which we conducted for four different cases with different bird numbers or flying patterns, TrackMate had the best overall performance for counting birds and pinpointing their locations, followed by Particle Analyzer, Find Maxima, WEKA, and lastly, Watershed, which showed low precision in most of the cases. In summary, five ImageJ-based counting methods were compared in this study, and we validated that TrackMate obtains the best performance for bird counting and detection. Full article
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13 pages, 6413 KiB  
Article
Comparative Analysis of Plaque Removal and Wear between Electric–Mechanical and Bioelectric Toothbrushes
by Jihyun Lee, Hyun M. Park and Young Wook Kim
Bioengineering 2024, 11(5), 474; https://doi.org/10.3390/bioengineering11050474 (registering DOI) - 9 May 2024
Abstract
Effective oral care is important for maintaining a high quality of life. Therefore, plaque control can prevent the development and recurrence of periodontitis. Brushing with a toothbrush and toothpaste is a common way to remove plaque; however, excessive brushing or brushing with abrasive [...] Read more.
Effective oral care is important for maintaining a high quality of life. Therefore, plaque control can prevent the development and recurrence of periodontitis. Brushing with a toothbrush and toothpaste is a common way to remove plaque; however, excessive brushing or brushing with abrasive toothpaste can cause wear and tear on the dental crown. Hence, we aimed to quantitatively compare the plaque-removal efficiency and tooth wear of toothbrushes using the bioelectric effect (BE) with those of electric–mechanical toothbrushes. To generate the BE signal, an electronic circuit was developed and embedded in a toothbrush. Further, typodonts were coated with cultured artificial plaques and placed in a brushing simulator. A toothpaste slurry was applied, and the typodonts were eluted with tap water after brushing. The plaques of the typodonts were captured, and the images were quantified. For the tooth wear experiment, polymethyl methacrylate disk resin blocks were brushed twice a day, and the thickness of the samples was measured. Subsequently, statistical differences between the experimental toothbrushes and typical toothbrushes were analyzed. The BE toothbrush had a higher plaque-removal efficiency and could minimize tooth wear. This study suggests that the application of BE may be a new solution for oral care. Full article
(This article belongs to the Special Issue Application of Bioengineering to Implant Dentistry)
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22 pages, 4680 KiB  
Article
Exposure to a PFOA, PFOS and PFHxS Mixture during Gestation and Lactation Alters the Liver Proteome in Offspring of CD-1 Mice
by Emily Kaye, Emily Marques, Juliana Agudelo Areiza, Seyed Mohamad Sadegh Modaresi and Angela Slitt
Toxics 2024, 12(5), 348; https://doi.org/10.3390/toxics12050348 (registering DOI) - 9 May 2024
Abstract
Perfluroalkyl substances (PFASs) are persistent man-made chemicals considered to be emerging pollutants, with Perfluorooctanoic acid (PFOA), Perfluorooctanesulfonic acid (PFOS), and Perfluorohexanesulphonic acid (PFHxS) being linked to hepatotoxicity and steatosis. PFOA, PFOS, and PFHxS can undergo placental and lactational transfer, which results in PFOA, [...] Read more.
Perfluroalkyl substances (PFASs) are persistent man-made chemicals considered to be emerging pollutants, with Perfluorooctanoic acid (PFOA), Perfluorooctanesulfonic acid (PFOS), and Perfluorohexanesulphonic acid (PFHxS) being linked to hepatotoxicity and steatosis. PFOA, PFOS, and PFHxS can undergo placental and lactational transfer, which results in PFOA, PFOS, and PFHxS distribution to the neonatal liver. Moreover, in pregnant dams, exposure to a PFAS mixture, in combination with a high fat diet, increased hepatic steatosis in offspring at postnatal day 21, but the mechanisms have not been elucidated. It was hypothesized that gestational/lactational PFAS exposure would alter the pup liver proteome and biochemical/signaling pathways. Timed-pregnant CD-1 dams were fed a standard chow or 60% kcal high-fat diet. From GD1 until PND20, dams were dosed via oral gavage with vehicle (0.5% Tween 20), individual doses of PFOA, PFOS, PFHxS at 1 mg/kg, or a mixture (1 mg/kg each, totaling 3 mg/kg). Livers were collected from PND21 offspring and SWATH-MS proteomics was performed. IPA analysis revealed PFAS exposure modified disease and biological function pathways involved in liver damage, xenobiotics, and lipid regulation in the PND21 liver. These pathways included lipid and fatty acid transport, storage, oxidation, and synthesis, as well as xenobiotic metabolism and transport, and liver damage and inflammation. This indicates the pup liver proteome is altered via maternal exposure and predisposes the pup to metabolic dysfunctions. Full article
(This article belongs to the Special Issue PFAS Toxicology and Metabolism)
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